Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0006578

Physical Location & Seq

Genomic Coordinates Forward (+)

17944472 .. 17948187

Gene Structure 3716 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1073900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGAGCTTCTGCAAGAAGAGCTTTCACCAGATGACTTCAAAGCTACTAAAACAAACCGTATTAAGTATACCAGGCAGGACTCGATACATGGAGCTTACTTCACAAATGACTTTGAATGGAAGGATTACAGTCCCGCAGTTTTCAGACGTTTGCTGGAGCTTGACAGTATAATTAGTTATGATGACTACCTGCTTACAGTACGTGGAGATGACACTCTAAGGGAGGTTTCTTTACCAGGACGCTACGGTAGGGTGTATATATTGCCTGGTGACAAACGATTAGTGATTAAAACTCTGCGGAAATCAGAAAAGCAGGTGTACCTAGAAATGCTTCCAAACTATTACCGCCATGTTAAGAAGTACGGGGCCTCACTTTTTAAAAGACTCTATGGACTTCATGTTATCAGGCCACCGGGAGGTATCAAGGTTTACTTTGCAGTTTGCGCAAGTGTAATGCCGTCAGAACTTTGCTTATATAAGTGCTATGATCTCAAGGGCTCTTCAGTTGGTAGAGCCCGCAACAGATCACACGTCCACGACACGGCCATACTTAAGGATCTGGATTTTGATTTTTGCTTTTACCTGGATCCATTAGTCCATGCTCGGCTCTTAGCACAAATCAAGTATGACTGCGAGTTTTTGGAGGCCGAGGGCATCATGGATTATAGTTTATTGCTTGGTATGCGCATAGATACTTCACGTTCACGGGAAGGTGGTTCAATTGATAAAAGAAATTCCAGAAGTTTTGATGCCAAAAAGCAAATAGATGATGCTTCTGAAGATGATGAAACCTCATCAGAGTTAACTCTTGCCGATATCTGCGATCTAATTGACAGGCCTGGTTTTAAATTTGGCGACAGACTGCCAGCACGCGCTGTCCGAGCCTTCAATAATGGAATGGAGAGTAAATCATATAGGTCCAGCAGATCACATGAATGCTTCAATGTTCTTTTATTCTTTGGAATAATAGACTTTTGTCAGAATTACAATATGAAGAAACGCATTGAGCATGCTTTCAAGGCAATCAAATATGACTCTAAGTCCATCAATACTGTGAACCCCAAAGCCTATTCTTCTCGCTTTCAAGAGTTTCTGAGCGAAGTATTTCTGCCCGAAGAGTCGGATGACTTTGATCACAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016307 GO:0016308 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0030258 GO:0044237 GO:0044238 GO:0044255 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04011 ko04070 ko04072 ko04139 ko04144 ko04666 ko04810 ko05231 map00562 map01100 map04011 map04070 map04072 map04139 map04144 map04666 map04810 map05231

Pfam Domains

Protein Families

PIP5K

Protein Analysis

381

Amino Acids

44.11

Weight (kDa)

6.77

Isoelectric Point (pI)

44.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PIP5K	PF01504	69 - 367	8.8e-71	Phosphatidylinositol-4-phosphate 5-Kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006578)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01460 AT4G01190 AT4G01190 AT4G01190
fragaria_vesca	FvH4_7g15740 FvH4_7g15740 FvH4_7g15740 FvH4_7g15740
malus_domestica	MD01G1073900.v1.1 MD07G1142600.v1.1
prunus_persica	Prupe.2G182000_v2.0.a1 Prupe.2G182000_v2.0.a1
pyrus_communis	pycom01g10310
rosa_chinensis	RchiOBHm_Chr1g0358451
rosa_laevigata	RLG00000027957
rosa_multiflora	Rmu_co8148590.1_g000001 Rmu_sc0008220.1_g000008
rosa_roxburghii	Rroxscaffold_4G00297910
rosa_rugosa	Rorug01G0262000 Rorug01G0262100 Rorug01G0262200
rosa_samantha	Rh1AG276600 Rh1BG243100 Rh1CG260200 Rh1DG271400
rosa_wichuraiana	Rw1G024600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	304
Acc16I	TGCGCA	2 cut(s)	445, 686
Acc36I	ACCTGC	2 cut(s)	198, 304
AccI	GTMKAC	1 cut(s)	68
AccII	CGCG	1 cut(s)	873
AciI	CCGC	4 cut(s)	135, 298, 346, 517
AclWI	GGATC	3 cut(s)	564, 581, 594
AcoI	YGGCCR	1 cut(s)	543
AcsI	RAATTY	2 cut(s)	733, 848
AcuI	CTGAAG	2 cut(s)	486, 798
AfaI	GTAC	3 cut(s)	201, 320, 362
AfiI	CCNNNNNNNGG	2 cut(s)	416, 541
AflII	CTTAAG	1 cut(s)	551
AflIII	ACRYGT	1 cut(s)	529
AgsI	TTSAA	7 cut(s)	40, 116, 720, 889, 943, 1018, 1085
AhdI	GACNNNNNGTC	1 cut(s)	1039
AjiI	CACGTC	1 cut(s)	532
AjnI	CCWGG	5 cut(s)	71, 235, 265, 582, 838
AluBI	AGCT	5 cut(s)	7, 22, 44, 95, 160
AluI	AGCT	5 cut(s)	7, 22, 44, 95, 160
AlwI	GGATC	3 cut(s)	564, 581, 594
AoxI	GGCC	5 cut(s)	366, 407, 543, 645, 836
ApoI	RAATTY	2 cut(s)	733, 848
Asp700I	GAANNNNTTC	2 cut(s)	330, 1104
AspLEI	GCGC	3 cut(s)	446, 687, 875
AspS9I	GGNCC	2 cut(s)	366, 918
AsuC2I	CCSGG	1 cut(s)	414
AsuHPI	GGTGA	2 cut(s)	18, 281
AvaII	GGWCC	1 cut(s)	918
BamHI	GGATCC	1 cut(s)	586
BanII	GRGCYC	2 cut(s)	500, 517
BccI	CCATC	1 cut(s)	1052
BceAI	ACGGC	2 cut(s)	442, 558
BciT130I	CCWGG	5 cut(s)	73, 237, 267, 584, 840
BclI	TGATCA	1 cut(s)	1132
BcnI	CCSGG	1 cut(s)	414
BfaI	CTAG	2 cut(s)	323, 1141
BfrI	CTTAAG	1 cut(s)	551
BfuAI	ACCTGC	2 cut(s)	198, 304
Bme1390I	CCNGG	6 cut(s)	73, 237, 267, 414, 584, 840
Bme18I	GGWCC	1 cut(s)	918
BmeRI	GACNNNNNGTC	1 cut(s)	1039
BmgBI	CACGTC	1 cut(s)	532
BmgT120I	GGNCC	2 cut(s)	366, 918
BmiI	GGNNCC	2 cut(s)	367, 588
BmrFI	CCNGG	6 cut(s)	73, 237, 267, 414, 584, 840
BmsI	GCATC	3 cut(s)	663, 739, 760
BoxI	GACNNNNGTC	1 cut(s)	975
BpmI	CTGGAG	1 cut(s)	176
BpuEI	CTTGAG	1 cut(s)	476
BpuMI	CCSGG	1 cut(s)	414
BsaAI	YACGTR	1 cut(s)	203
BsaJI	CCNNGG	1 cut(s)	648
Bsc4I	CCNNNNNNNGG	2 cut(s)	416, 541
BseBI	CCWGG	5 cut(s)	73, 237, 267, 584, 840
BseDI	CCNNGG	1 cut(s)	648
BseGI	GGATG	1 cut(s)	1129
BseLI	CCNNNNNNNGG	2 cut(s)	416, 541
BseMII	CTCAG	1 cut(s)	1085
Bsh1236I	CGCG	1 cut(s)	873
BshFI	GGCC	5 cut(s)	368, 409, 545, 647, 838
BsiSI	CCGG	1 cut(s)	413
BslFI	GGGAC	1 cut(s)	117
BslI	CCNNNNNNNGG	2 cut(s)	416, 541
BsmFI	GGGAC	1 cut(s)	117
BsmI	GAATGC	1 cut(s)	941
BsnI	GGCC	5 cut(s)	368, 409, 545, 647, 838
Bsp1286I	GDGCHC	2 cut(s)	500, 517
Bsp143I	GATC	7 cut(s)	487, 524, 556, 586, 823, 926, 1132
BspACI	CCGC	4 cut(s)	135, 298, 346, 517
BspANI	GGCC	5 cut(s)	368, 409, 545, 647, 838
BspCNI	CTCAG	1 cut(s)	1086
BspFNI	CGCG	1 cut(s)	873
BspLI	GGNNCC	2 cut(s)	367, 588
BspMI	ACCTGC	2 cut(s)	198, 304
BspPI	GGATC	3 cut(s)	564, 581, 594
BspQI	GCTCTTC	2 cut(s)	12, 505
BspTI	CTTAAG	1 cut(s)	551
BssECI	CCNNGG	1 cut(s)	648
BssMI	GATC	7 cut(s)	487, 524, 556, 586, 823, 926, 1132
BssNAI	GTATAC	1 cut(s)	69
Bst1107I	GTATAC	1 cut(s)	69
Bst2UI	CCWGG	5 cut(s)	73, 237, 267, 584, 840
Bst4CI	ACNGT	6 cut(s)	59, 131, 167, 199, 248, 1054
Bst6I	CTCTTC	3 cut(s)	12, 505, 1110
BstAFI	CTTAAG	1 cut(s)	551
BstBAI	YACGTR	1 cut(s)	203
BstC8I	GCNNGC	4 cut(s)	517, 867, 871, 1011
BstDEI	CTNAG	4 cut(s)	218, 610, 1038, 1094
BstF5I	GGATG	1 cut(s)	1129
BstFNI	CGCG	1 cut(s)	873
BstHHI	GCGC	3 cut(s)	446, 687, 875
BstKTI	GATC	7 cut(s)	490, 527, 559, 589, 826, 929, 1135
BstMBI	GATC	7 cut(s)	487, 524, 556, 586, 823, 926, 1132
BstMWI	GCNNNNNNNGC	5 cut(s)	19, 443, 682, 881, 1019
BstNI	CCWGG	5 cut(s)	73, 237, 267, 584, 840
BstNSI	RCATGY	1 cut(s)	1013
BstPAI	GACNNNNGTC	1 cut(s)	975
BstSCI	CCNGG	6 cut(s)	71, 235, 265, 412, 582, 838
BstUI	CGCG	1 cut(s)	873
BstX2I	RGATCY	2 cut(s)	556, 586
BstYI	RGATCY	2 cut(s)	556, 586
BstZ17I	GTATAC	1 cut(s)	69
BsuRI	GGCC	5 cut(s)	368, 409, 545, 647, 838
BtrI	CACGTC	1 cut(s)	532
BtsCI	GGATG	1 cut(s)	1129
BveI	ACCTGC	2 cut(s)	198, 304
Cac8I	GCNNGC	4 cut(s)	517, 867, 871, 1011
CfoI	GCGC	3 cut(s)	446, 687, 875
Cfr13I	GGNCC	2 cut(s)	366, 918
CseI	GACGC	1 cut(s)	249
Csp6I	GTAC	3 cut(s)	200, 319, 361
CviAII	CATG	7 cut(s)	89, 350, 398, 599, 658, 932, 1010
CviQI	GTAC	3 cut(s)	200, 319, 361
DdeI	CTNAG	4 cut(s)	218, 610, 1038, 1094
DpnI	GATC	7 cut(s)	489, 526, 558, 588, 825, 928, 1134
DpnII	GATC	7 cut(s)	487, 524, 556, 586, 823, 926, 1132
DraI	TTTAAA	2 cut(s)	379, 847
DriI	GACNNNNNGTC	1 cut(s)	1039
EaeI	YGGCCR	1 cut(s)	543
Eam1104I	CTCTTC	3 cut(s)	12, 505, 1110
Eam1105I	GACNNNNNGTC	1 cut(s)	1039
EarI	CTCTTC	3 cut(s)	12, 505, 1110
Eco147I	AGGCCT	1 cut(s)	838
Eco24I	GRGCYC	2 cut(s)	500, 517
Eco32I	GATATC	1 cut(s)	817
Eco47I	GGWCC	1 cut(s)	918
Eco57I	CTGAAG	2 cut(s)	486, 798
EcoO109I	RGGNCCY	1 cut(s)	366
EcoRII	CCWGG	5 cut(s)	71, 235, 265, 582, 838
EcoRV	GATATC	1 cut(s)	817
EcoT38I	GRGCYC	2 cut(s)	500, 517
FaeI	CATG	7 cut(s)	92, 353, 401, 602, 661, 935, 1013
FalI	AAGNNNNNCTT	3 cut(s)	38, 416, 448
FaqI	GGGAC	1 cut(s)	117
FatI	CATG	7 cut(s)	88, 349, 397, 598, 657, 931, 1009
FauI	CCCGC	2 cut(s)	142, 524
FbaI	TGATCA	1 cut(s)	1132
FblI	GTMKAC	1 cut(s)	68
FokI	GGATG	1 cut(s)	1136
FriOI	GRGCYC	2 cut(s)	500, 517
FspAI	RTGCGCAY	1 cut(s)	686
FspBI	CTAG	2 cut(s)	323, 1141
FspI	TGCGCA	2 cut(s)	445, 686
GlaI	GCGC	3 cut(s)	445, 686, 874
GsuI	CTGGAG	1 cut(s)	176
HaeIII	GGCC	5 cut(s)	368, 409, 545, 647, 838
HapII	CCGG	1 cut(s)	413
HgaI	GACGC	1 cut(s)	249
HhaI	GCGC	3 cut(s)	446, 687, 875
Hin1II	CATG	7 cut(s)	92, 353, 401, 602, 661, 935, 1013
Hin6I	GCGC	3 cut(s)	444, 685, 873
HinP1I	GCGC	3 cut(s)	444, 685, 873
HincII	GTYRAC	1 cut(s)	804
HindII	GTYRAC	1 cut(s)	804
HinfI	GANTC	4 cut(s)	80, 384, 1034, 1118
HpaI	GTTAAC	1 cut(s)	804
HpaII	CCGG	1 cut(s)	413
HphI	GGTGA	2 cut(s)	18, 281
Hpy166II	GTNNAC	7 cut(s)	69, 319, 430, 535, 704, 804, 1057
Hpy188I	TCNGA	9 cut(s)	146, 307, 463, 778, 799, 881, 981, 1095, 1123
Hpy188III	TCNNGA	3 cut(s)	560, 738, 1085
Hpy8I	GTNNAC	7 cut(s)	69, 319, 430, 535, 704, 804, 1057
HpyAV	CCTTC	3 cut(s)	115, 704, 895
HpyCH4III	ACNGT	6 cut(s)	59, 131, 167, 199, 248, 1054
HpyCH4IV	ACGT	4 cut(s)	148, 202, 531, 700
HpyCH4V	TGCA	2 cut(s)	13, 437
HpyF10VI	GCNNNNNNNGC	5 cut(s)	19, 443, 682, 881, 1019
HpyF3I	CTNAG	4 cut(s)	218, 610, 1038, 1094
HpySE526I	ACGT	4 cut(s)	148, 202, 531, 700
Hsp92II	CATG	7 cut(s)	92, 353, 401, 602, 661, 935, 1013
HspAI	GCGC	3 cut(s)	444, 685, 873
Ksp22I	TGATCA	1 cut(s)	1132
KspAI	GTTAAC	1 cut(s)	804
Kzo9I	GATC	7 cut(s)	487, 524, 556, 586, 823, 926, 1132
LguI	GCTCTTC	2 cut(s)	12, 505
LmnI	GCTCC	3 cut(s)	4, 92, 157
LweI	GCATC	3 cut(s)	663, 739, 760
MaeI	CTAG	2 cut(s)	323, 1141
MaeII	ACGT	4 cut(s)	148, 202, 531, 700
MaeIII	GTNAC	1 cut(s)	269
MalI	GATC	7 cut(s)	489, 526, 558, 588, 825, 928, 1134
MboI	GATC	7 cut(s)	487, 524, 556, 586, 823, 926, 1132
MboII	GAAGA	6 cut(s)	29, 492, 791, 1006, 1065, 1127
MfeI	CAATTG	1 cut(s)	720
MflI	RGATCY	2 cut(s)	556, 586
MhlI	GDGCHC	2 cut(s)	500, 517
MluCI	AATT	6 cut(s)	171, 720, 733, 828, 848, 982
MlyI	GAGTC	4 cut(s)	74, 378, 1028, 1127
MmeI	TCCRAC	1 cut(s)	1101
MnlI	CCTC	6 cut(s)	217, 379, 410, 637, 643, 802
MroXI	GAANNNNTTC	2 cut(s)	330, 1104
MseI	TTAA	7 cut(s)	63, 288, 354, 378, 552, 803, 846
MslI	CAYNNNNRTG	1 cut(s)	934
MspCI	CTTAAG	1 cut(s)	551
MspI	CCGG	1 cut(s)	413
MspR9I	CCNGG	6 cut(s)	73, 237, 267, 414, 584, 840
MunI	CAATTG	1 cut(s)	720
Mva1269I	GAATGC	1 cut(s)	941
MvaI	CCWGG	5 cut(s)	73, 237, 267, 584, 840
MvnI	CGCG	1 cut(s)	873
MwoI	GCNNNNNNNGC	5 cut(s)	19, 443, 682, 881, 1019
NciI	CCSGG	1 cut(s)	414
NdeII	GATC	7 cut(s)	487, 524, 556, 586, 823, 926, 1132
NlaIII	CATG	7 cut(s)	92, 353, 401, 602, 661, 935, 1013
NlaIV	GGNNCC	2 cut(s)	367, 588
NmeAIII	GCCGAG	2 cut(s)	583, 673
NmuCI	GTSAC	1 cut(s)	269
NsbI	TGCGCA	2 cut(s)	445, 686
NspI	RCATGY	1 cut(s)	1013
PaeI	GCATGC	1 cut(s)	1013
PaqCI	CACCTGC	1 cut(s)	304
PceI	AGGCCT	1 cut(s)	838
PciSI	GCTCTTC	2 cut(s)	12, 505
PcsI	WCGNNNNNNNCGW	1 cut(s)	877
PctI	GAATGC	1 cut(s)	941
PdmI	GAANNNNTTC	2 cut(s)	330, 1104
PleI	GAGTC	4 cut(s)	74, 378, 1028, 1126
PpsI	GAGTC	4 cut(s)	74, 378, 1028, 1126
Ppu21I	YACGTR	1 cut(s)	203
PshAI	GACNNNNGTC	1 cut(s)	975
Psp6I	CCWGG	5 cut(s)	71, 235, 265, 582, 838
PspGI	CCWGG	5 cut(s)	71, 235, 265, 582, 838
PspN4I	GGNNCC	2 cut(s)	367, 588
PspPI	GGNCC	2 cut(s)	366, 918
PsuI	RGATCY	2 cut(s)	556, 586
RsaI	GTAC	3 cut(s)	201, 320, 362
RsaNI	GTAC	3 cut(s)	200, 319, 361
RseI	CAYNNNNRTG	1 cut(s)	934
SapI	GCTCTTC	2 cut(s)	12, 505
SaqAI	TTAA	7 cut(s)	63, 288, 354, 378, 552, 803, 846
Sau3AI	GATC	7 cut(s)	487, 524, 556, 586, 823, 926, 1132
Sau96I	GGNCC	2 cut(s)	366, 918
SchI	GAGTC	4 cut(s)	74, 378, 1028, 1127
ScrFI	CCNGG	6 cut(s)	73, 237, 267, 414, 584, 840
SduI	GDGCHC	2 cut(s)	500, 517
SfaNI	GCATC	3 cut(s)	663, 739, 760
SinI	GGWCC	1 cut(s)	918
SmiMI	CAYNNNNRTG	1 cut(s)	934
SmlI	CTYRAG	2 cut(s)	491, 551
SmoI	CTYRAG	2 cut(s)	491, 551
SphI	GCATGC	1 cut(s)	1013
Sse9I	AATT	6 cut(s)	171, 720, 733, 828, 848, 982
SseBI	AGGCCT	1 cut(s)	838
SsiI	CCGC	4 cut(s)	135, 298, 346, 517
SspMI	CTAG	2 cut(s)	323, 1141
StuI	AGGCCT	1 cut(s)	838
StyD4I	CCNGG	6 cut(s)	71, 235, 265, 412, 582, 838
TaaI	ACNGT	6 cut(s)	59, 131, 167, 199, 248, 1054
TaiI	ACGT	4 cut(s)	151, 205, 534, 703
TaqI	TCGA	1 cut(s)	83
TasI	AATT	6 cut(s)	171, 720, 733, 828, 848, 982
Tru1I	TTAA	7 cut(s)	63, 288, 354, 378, 552, 803, 846
Tru9I	TTAA	7 cut(s)	63, 288, 354, 378, 552, 803, 846
TseFI	GTSAC	1 cut(s)	269
Tsp45I	GTSAC	1 cut(s)	269
TspDTI	ATGAA	4 cut(s)	386, 801, 948, 1007
Vha464I	CTTAAG	1 cut(s)	551
VpaK11BI	GGWCC	1 cut(s)	918
XapI	RAATTY	2 cut(s)	733, 848
XceI	RCATGY	1 cut(s)	1013
XmiI	GTMKAC	1 cut(s)	68
XmnI	GAANNNNTTC	2 cut(s)	330, 1104
XspI	CTAG	2 cut(s)	323, 1141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.