Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0006578

Physical Location & Seq

Genomic Coordinates Reverse (-)

17805207 .. 17809903

Gene Structure 4697 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00297910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGCTTCCCAACTACTACGACCATCTTATGAAGTATGGATCCTCACTACTAGCCAAACTGTATGGACTTCATGTTGTCAGGCCAGCAGGAGGTGTTAAGGTTTACTTTGTTGTTTTTGGAAACGTAATCCCTTCAGATATTTGCATATTTGAGCATTATGACCTCAAAGGCTCTTCAAAAGGTCGAGCAGAGAACAAAGTCATTATTCAGGAGAGACCCGTACATAAGGATATGGATTTTGATTTTCGCTTTTACCTGGATCCATTGGTTCGAGATCGGCTCTTAGCGCAAATCAAGACTGACTGCGAGTTTTTGGAATCTGAAGGCGTCATGGATTATAGTTTGTTTCTTGCTATACAAATAGAATCTCCACATCAAGTTTCAGTTGATAAAAGAACTTCCAGAAGGACTGATAAAGAGATAATAGACGATACTTCAGAAGGAAGTGATGAAAGCTCAGAGTTAACTCTTGCTGATATTTGCGACCTACTTGACAGGCCTGGTTTTAGATTTGGTGCAAGCCTGCCAGCACGTGCTGTCCGGGCCTTCAAGAAAGAAATGGCAAGTTCGAGATCAAATAGGTCCAGAAATTCCAGAGCACAGTCATCAGCACAGGAATGCTTCAATGTTCTTTTATTCTTTGGAATCGTAGATATTTGTCAGAATTACAATATGAGAAAACGCCTTGAGCATGCTTGCAAGTCCATTAAATATGACTCAAAGTCCATTGCAACTGTGAACCCCAAAGCTTATTCTTCTCGCTTTCAAGAGTTTATGAGCGAAGTGTTTCTACCAGAAGTGTCGGACGACTTTTCTGATAGCCGGGTCTCAGGCGCATCATCATCTAACAGGGTCGCAGCCCCATCATCATCGAAGATTTCTGTTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016307 GO:0016308 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0030258 GO:0044237 GO:0044238 GO:0044255 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04011 ko04070 ko04072 ko04139 ko04144 ko04666 ko04810 ko05231 map00562 map01100 map04011 map04070 map04072 map04139 map04144 map04666 map04810 map05231

Pfam Domains

Protein Families

PIP5K

Protein Analysis

296

Amino Acids

33.49

Weight (kDa)

7.61

Isoelectric Point (pI)

51.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PIP5K	PF01504	1 - 261	1.1e-63	Phosphatidylinositol-4-phosphate 5-Kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006578)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01460 AT4G01190 AT4G01190 AT4G01190
fragaria_vesca	FvH4_7g15740 FvH4_7g15740 FvH4_7g15740 FvH4_7g15740
malus_domestica	MD01G1073900.v1.1 MD07G1142600.v1.1
prunus_persica	Prupe.2G182000_v2.0.a1 Prupe.2G182000_v2.0.a1
pyrus_communis	pycom01g10310
rosa_chinensis	RchiOBHm_Chr1g0358451
rosa_laevigata	RLG00000027957
rosa_multiflora	Rmu_co8148590.1_g000001 Rmu_sc0008220.1_g000008
rosa_roxburghii	Rroxscaffold_4G00297910
rosa_rugosa	Rorug01G0262000 Rorug01G0262100 Rorug01G0262200
rosa_samantha	Rh1AG276600 Rh1BG243100 Rh1CG260200 Rh1DG271400
rosa_wichuraiana	Rw1G024600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	33, 46, 254, 267
AcsI	RAATTY	1 cut(s)	589
AcuI	CTGAAG	3 cut(s)	117, 342, 420
AcvI	CACGTG	1 cut(s)	533
AcyI	GRCGYC	1 cut(s)	327
AfaI	GTAC	1 cut(s)	222
AfiI	CCNNNNNNNGG	1 cut(s)	89
AgsI	TTSAA	4 cut(s)	177, 550, 625, 767
AhdI	GACNNNNNGTC	1 cut(s)	721
AjnI	CCWGG	2 cut(s)	255, 499
AluBI	AGCT	2 cut(s)	456, 749
AluI	AGCT	2 cut(s)	456, 749
Alw21I	GWGCWC	1 cut(s)	601
Alw26I	GTCTC	2 cut(s)	208, 832
AlwI	GGATC	4 cut(s)	33, 46, 254, 267
AoxI	GGCC	3 cut(s)	80, 497, 543
ApeKI	GCWGC	1 cut(s)	857
ApoI	RAATTY	1 cut(s)	589
Asp700I	GAANNNNTTC	1 cut(s)	786
AspLEI	GCGC	2 cut(s)	289, 836
AspS9I	GGNCC	2 cut(s)	543, 582
AsuC2I	CCSGG	2 cut(s)	542, 824
AvaII	GGWCC	1 cut(s)	582
BamHI	GGATCC	2 cut(s)	38, 259
BarI	GAAGNNNNNNTAC	2 cut(s)	774, 806
BbrPI	CACGTG	1 cut(s)	533
Bbv12I	GWGCWC	1 cut(s)	601
BbvI	GCAGC	1 cut(s)	869
BccI	CCATC	2 cut(s)	30, 871
BciT130I	CCWGG	2 cut(s)	257, 501
BcnI	CCSGG	2 cut(s)	542, 824
BcoDI	GTCTC	2 cut(s)	208, 832
BfaI	CTAG	1 cut(s)	50
BisI	GCNGC	1 cut(s)	858
BlsI	GCNGC	1 cut(s)	859
Bme1390I	CCNGG	4 cut(s)	257, 501, 542, 824
Bme18I	GGWCC	1 cut(s)	582
BmeRI	GACNNNNNGTC	1 cut(s)	721
BmgT120I	GGNCC	2 cut(s)	543, 582
BmiI	GGNNCC	2 cut(s)	40, 261
BmrFI	CCNGG	4 cut(s)	257, 501, 542, 824
BmsI	GCATC	1 cut(s)	845
BplI	GAGNNNNNCTC	2 cut(s)	264, 296
BpuEI	CTTGAG	1 cut(s)	707
BpuMI	CCSGG	2 cut(s)	542, 824
BsaAI	YACGTR	1 cut(s)	533
BsaHI	GRCGYC	1 cut(s)	327
BsaI	GGTCTC	2 cut(s)	208, 832
Bsc4I	CCNNNNNNNGG	1 cut(s)	89
Bse3DI	GCAATG	1 cut(s)	726
BseBI	CCWGG	2 cut(s)	257, 501
BseLI	CCNNNNNNNGG	1 cut(s)	89
BseMI	GCAATG	1 cut(s)	726
BseMII	CTCAG	2 cut(s)	471, 843
BseXI	GCAGC	1 cut(s)	869
BshFI	GGCC	3 cut(s)	82, 499, 545
BsiHKAI	GWGCWC	1 cut(s)	601
BsiSI	CCGG	2 cut(s)	541, 823
BslI	CCNNNNNNNGG	1 cut(s)	89
BsmAI	GTCTC	2 cut(s)	208, 832
BsmI	GAATGC	1 cut(s)	623
BsnI	GGCC	3 cut(s)	82, 499, 545
Bso31I	GGTCTC	2 cut(s)	208, 832
Bsp1286I	GDGCHC	1 cut(s)	601
Bsp143I	GATC	4 cut(s)	38, 259, 274, 572
BspANI	GGCC	3 cut(s)	82, 499, 545
BspCNI	CTCAG	2 cut(s)	470, 842
BspLI	GGNNCC	2 cut(s)	40, 261
BspPI	GGATC	4 cut(s)	33, 46, 254, 267
BspQI	GCTCTTC	1 cut(s)	178
BspTNI	GGTCTC	2 cut(s)	208, 832
BsrDI	GCAATG	1 cut(s)	726
BssMI	GATC	4 cut(s)	38, 259, 274, 572
BssNI	GRCGYC	1 cut(s)	327
Bst2UI	CCWGG	2 cut(s)	257, 501
Bst4CI	ACNGT	3 cut(s)	60, 603, 736
Bst6I	CTCTTC	1 cut(s)	178
BstACI	GRCGYC	1 cut(s)	327
BstBAI	YACGTR	1 cut(s)	533
BstC8I	GCNNGC	6 cut(s)	84, 520, 524, 528, 693, 697
BstDEI	CTNAG	3 cut(s)	283, 457, 829
BstHHI	GCGC	2 cut(s)	289, 836
BstKTI	GATC	4 cut(s)	41, 262, 277, 575
BstMAI	GTCTC	2 cut(s)	208, 832
BstMBI	GATC	4 cut(s)	38, 259, 274, 572
BstMWI	GCNNNNNNNGC	2 cut(s)	286, 542
BstNI	CCWGG	2 cut(s)	257, 501
BstNSI	RCATGY	1 cut(s)	695
BstSCI	CCNGG	4 cut(s)	255, 499, 540, 822
BstV1I	GCAGC	1 cut(s)	869
BstX2I	RGATCY	2 cut(s)	38, 259
BstYI	RGATCY	2 cut(s)	38, 259
BsuRI	GGCC	3 cut(s)	82, 499, 545
Cac8I	GCNNGC	6 cut(s)	84, 520, 524, 528, 693, 697
CfoI	GCGC	2 cut(s)	289, 836
Cfr13I	GGNCC	2 cut(s)	543, 582
CseI	GACGC	1 cut(s)	316
Csp6I	GTAC	1 cut(s)	221
CviAII	CATG	3 cut(s)	71, 331, 692
CviQI	GTAC	1 cut(s)	221
DdeI	CTNAG	3 cut(s)	283, 457, 829
DpnI	GATC	4 cut(s)	40, 261, 276, 574
DpnII	GATC	4 cut(s)	38, 259, 274, 572
DriI	GACNNNNNGTC	1 cut(s)	721
Eam1104I	CTCTTC	1 cut(s)	178
Eam1105I	GACNNNNNGTC	1 cut(s)	721
EarI	CTCTTC	1 cut(s)	178
Eco147I	AGGCCT	1 cut(s)	499
Eco31I	GGTCTC	2 cut(s)	208, 832
Eco47I	GGWCC	1 cut(s)	582
Eco57I	CTGAAG	3 cut(s)	117, 342, 420
Eco72I	CACGTG	1 cut(s)	533
EcoRII	CCWGG	2 cut(s)	255, 499
FaeI	CATG	3 cut(s)	74, 334, 695
FalI	AAGNNNNNCTT	2 cut(s)	89, 121
FatI	CATG	3 cut(s)	70, 330, 691
Fnu4HI	GCNGC	1 cut(s)	858
Fsp4HI	GCNGC	1 cut(s)	858
FspBI	CTAG	1 cut(s)	50
GlaI	GCGC	2 cut(s)	288, 835
GluI	GCNGC	1 cut(s)	858
HaeIII	GGCC	3 cut(s)	82, 499, 545
HapII	CCGG	2 cut(s)	541, 823
HgaI	GACGC	1 cut(s)	316
HhaI	GCGC	2 cut(s)	289, 836
Hin1I	GRCGYC	1 cut(s)	327
Hin1II	CATG	3 cut(s)	74, 334, 695
Hin6I	GCGC	2 cut(s)	287, 834
HinP1I	GCGC	2 cut(s)	287, 834
HincII	GTYRAC	1 cut(s)	465
HindII	GTYRAC	1 cut(s)	465
HindIII	AAGCTT	1 cut(s)	747
HinfI	GANTC	4 cut(s)	317, 365, 645, 716
HpaI	GTTAAC	1 cut(s)	465
HpaII	CCGG	2 cut(s)	541, 823
Hpy166II	GTNNAC	3 cut(s)	103, 465, 739
Hpy188I	TCNGA	7 cut(s)	136, 322, 439, 460, 663, 805, 817
Hpy188III	TCNNGA	9 cut(s)	209, 272, 295, 402, 550, 570, 585, 594, 767
Hpy8I	GTNNAC	3 cut(s)	103, 465, 739
HpyAV	CCTTC	5 cut(s)	141, 317, 399, 434, 556
HpyCH4III	ACNGT	3 cut(s)	60, 603, 736
HpyCH4IV	ACGT	2 cut(s)	123, 532
HpyCH4V	TGCA	4 cut(s)	144, 518, 699, 731
HpyF10VI	GCNNNNNNNGC	2 cut(s)	286, 542
HpyF3I	CTNAG	3 cut(s)	283, 457, 829
HpySE526I	ACGT	2 cut(s)	123, 532
Hsp92I	GRCGYC	1 cut(s)	327
Hsp92II	CATG	3 cut(s)	74, 334, 695
HspAI	GCGC	2 cut(s)	287, 834
KspAI	GTTAAC	1 cut(s)	465
Kzo9I	GATC	4 cut(s)	38, 259, 274, 572
LguI	GCTCTTC	1 cut(s)	178
Lsp1109I	GCAGC	1 cut(s)	869
LweI	GCATC	1 cut(s)	845
MaeI	CTAG	1 cut(s)	50
MaeII	ACGT	2 cut(s)	123, 532
MalI	GATC	4 cut(s)	40, 261, 276, 574
MboI	GATC	4 cut(s)	38, 259, 274, 572
MboII	GAAGA	3 cut(s)	165, 747, 886
MflI	RGATCY	2 cut(s)	38, 259
MhlI	GDGCHC	1 cut(s)	601
MluCI	AATT	2 cut(s)	589, 664
MlyI	GAGTC	1 cut(s)	710
MmeI	TCCRAC	1 cut(s)	783
MnlI	CCTC	3 cut(s)	52, 83, 173
MroXI	GAANNNNTTC	1 cut(s)	786
MseI	TTAA	3 cut(s)	96, 464, 708
MslI	CAYNNNNRTG	1 cut(s)	616
MspI	CCGG	2 cut(s)	541, 823
MspR9I	CCNGG	4 cut(s)	257, 501, 542, 824
Mva1269I	GAATGC	1 cut(s)	623
MvaI	CCWGG	2 cut(s)	257, 501
MwoI	GCNNNNNNNGC	2 cut(s)	286, 542
NciI	CCSGG	2 cut(s)	542, 824
NdeII	GATC	4 cut(s)	38, 259, 274, 572
NlaIII	CATG	3 cut(s)	74, 334, 695
NlaIV	GGNNCC	2 cut(s)	40, 261
NspI	RCATGY	1 cut(s)	695
PaeI	GCATGC	1 cut(s)	695
PceI	AGGCCT	1 cut(s)	499
PciSI	GCTCTTC	1 cut(s)	178
PctI	GAATGC	1 cut(s)	623
PdmI	GAANNNNTTC	1 cut(s)	786
PfeI	GAWTC	3 cut(s)	317, 365, 645
PkrI	GCNGC	1 cut(s)	859
PleI	GAGTC	1 cut(s)	710
PmaCI	CACGTG	1 cut(s)	533
PmlI	CACGTG	1 cut(s)	533
PpsI	GAGTC	1 cut(s)	710
Ppu21I	YACGTR	1 cut(s)	533
Psp6I	CCWGG	2 cut(s)	255, 499
PspCI	CACGTG	1 cut(s)	533
PspGI	CCWGG	2 cut(s)	255, 499
PspN4I	GGNNCC	2 cut(s)	40, 261
PspPI	GGNCC	2 cut(s)	543, 582
PsuI	RGATCY	2 cut(s)	38, 259
RsaI	GTAC	1 cut(s)	222
RsaNI	GTAC	1 cut(s)	221
RseI	CAYNNNNRTG	1 cut(s)	616
SapI	GCTCTTC	1 cut(s)	178
SaqAI	TTAA	3 cut(s)	96, 464, 708
SatI	GCNGC	1 cut(s)	858
Sau3AI	GATC	4 cut(s)	38, 259, 274, 572
Sau96I	GGNCC	2 cut(s)	543, 582
SchI	GAGTC	1 cut(s)	710
ScrFI	CCNGG	4 cut(s)	257, 501, 542, 824
SduI	GDGCHC	1 cut(s)	601
SfaNI	GCATC	1 cut(s)	845
SinI	GGWCC	1 cut(s)	582
SmiMI	CAYNNNNRTG	1 cut(s)	616
SmlI	CTYRAG	1 cut(s)	686
SmoI	CTYRAG	1 cut(s)	686
SphI	GCATGC	1 cut(s)	695
Sse9I	AATT	2 cut(s)	589, 664
SseBI	AGGCCT	1 cut(s)	499
SspMI	CTAG	1 cut(s)	50
StuI	AGGCCT	1 cut(s)	499
StyD4I	CCNGG	4 cut(s)	255, 499, 540, 822
TaaI	ACNGT	3 cut(s)	60, 603, 736
TaiI	ACGT	2 cut(s)	126, 535
TaqI	TCGA	4 cut(s)	184, 271, 569, 872
TasI	AATT	2 cut(s)	589, 664
TfiI	GAWTC	3 cut(s)	317, 365, 645
Tru1I	TTAA	3 cut(s)	96, 464, 708
Tru9I	TTAA	3 cut(s)	96, 464, 708
TseI	GCWGC	1 cut(s)	857
TspDTI	ATGAA	3 cut(s)	44, 59, 465
VpaK11BI	GGWCC	1 cut(s)	582
XapI	RAATTY	1 cut(s)	589
XceI	RCATGY	1 cut(s)	695
XmnI	GAANNNNTTC	1 cut(s)	786
XspI	CTAG	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.