Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0006578

Physical Location & Seq

Genomic Coordinates Reverse (-)

37214784 .. 37215293

Gene Structure 510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0262100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGACTCCATGGATGAGGCGGAGTCAGAAGCACCGCCGCCGCCGCCGCCGTCACTACCACCACTTTCAAACCTTATTCTCTCCCTTGAACAAGCAACCCTCATGGCCAAGCAGCTCCCTTCCACCTCCGACCCAACTCACCTCCTTCACATCCACTCCTCCCTCCACCAAGCCCACCACCACCTCTCCACCTTCCTCTCCACAACCCACTTCCCCCAGCCGCCTCCCGCCGCCGAGAACTCCCTCTCCTCCGCCACCGGCAACGACCCGATGGACTTCGGCGGCGATGAGGAGAATTCCAAGAGCACAATTGAGAGGGTGGAGGAGCAGATGAGGGGCTGCTTCATTAAGAATAAGAGGGGGAGGAAGAGGCAGCTTTCACCTTCTGCGGCGGCCGTGGCGGAGGAGAGACAGCTCAACGGTGATGGGCTTGTGGGCAATGTGGTGGGTTTTGATCCTCATGAAACTAGGTCGAGGGCGTTGGAGCTTGTGTACCAGTTTCATTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016307 GO:0016308 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0030258 GO:0044237 GO:0044238 GO:0044255 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04011 ko04070 ko04072 ko04139 ko04144 ko04666 ko04810 ko05231 map00562 map01100 map04011 map04070 map04072 map04139 map04144 map04666 map04810 map05231

Pfam Domains

Protein Families

PIP5K

Protein Analysis

169

Amino Acids

18.49

Weight (kDa)

5.49

Isoelectric Point (pI)

61.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006578)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01460 AT4G01190 AT4G01190 AT4G01190
fragaria_vesca	FvH4_7g15740 FvH4_7g15740 FvH4_7g15740 FvH4_7g15740
malus_domestica	MD01G1073900.v1.1 MD07G1142600.v1.1
prunus_persica	Prupe.2G182000_v2.0.a1 Prupe.2G182000_v2.0.a1
pyrus_communis	pycom01g10310
rosa_chinensis	RchiOBHm_Chr1g0358451
rosa_laevigata	RLG00000027957
rosa_multiflora	Rmu_co8148590.1_g000001 Rmu_sc0008220.1_g000008
rosa_roxburghii	Rroxscaffold_4G00297910
rosa_rugosa	Rorug01G0262000 Rorug01G0262100 Rorug01G0262200
rosa_samantha	Rh1AG276600 Rh1BG243100 Rh1CG260200 Rh1DG271400
rosa_wichuraiana	Rw1G024600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	449
AcoI	YGGCCR	2 cut(s)	105, 393
AcsI	RAATTY	1 cut(s)	295
AfaI	GTAC	1 cut(s)	494
AgsI	TTSAA	2 cut(s)	69, 89
AloI	GAACNNNNNNTCC	2 cut(s)	230, 262
AluBI	AGCT	4 cut(s)	115, 376, 415, 487
AluI	AGCT	4 cut(s)	115, 376, 415, 487
Alw21I	GWGCWC	1 cut(s)	308
Alw26I	GTCTC	1 cut(s)	403
AlwI	GGATC	1 cut(s)	449
AoxI	GGCC	2 cut(s)	105, 393
ApeKI	GCWGC	3 cut(s)	112, 339, 373
ApoI	RAATTY	1 cut(s)	295
AsuHPI	GGTGA	3 cut(s)	131, 372, 434
BalI	TGGCCA	1 cut(s)	107
Bbv12I	GWGCWC	1 cut(s)	308
BbvI	GCAGC	3 cut(s)	124, 326, 385
BccI	CCATC	2 cut(s)	265, 419
BceAI	ACGGC	2 cut(s)	34, 380
BcoDI	GTCTC	1 cut(s)	403
BfaI	CTAG	1 cut(s)	468
BsaJI	CCNNGG	2 cut(s)	9, 396
BsaXI	ACNNNNNCTCC	8 cut(s)	140, 170, 170, 200, 230, 260, 476, 506
Bse118I	RCCGGY	1 cut(s)	257
Bse1I	ACTGG	1 cut(s)	496
Bse3DI	GCAATG	1 cut(s)	445
BseDI	CCNNGG	2 cut(s)	9, 396
BseGI	GGATG	2 cut(s)	19, 150
BseMI	GCAATG	1 cut(s)	445
BseNI	ACTGG	1 cut(s)	496
BseRI	GAGGAG	5 cut(s)	148, 238, 305, 338, 419
BseX3I	CGGCCG	1 cut(s)	393
BseXI	GCAGC	3 cut(s)	124, 326, 385
BseYI	CCCAGC	1 cut(s)	216
Bsh1285I	CGRYCG	1 cut(s)	396
BshFI	GGCC	2 cut(s)	107, 395
BsiEI	CGRYCG	1 cut(s)	396
BsiHKAI	GWGCWC	1 cut(s)	308
BsiSI	CCGG	1 cut(s)	258
BsmAI	GTCTC	1 cut(s)	403
BsnI	GGCC	2 cut(s)	107, 395
Bsp1286I	GDGCHC	1 cut(s)	308
Bsp143I	GATC	1 cut(s)	454
Bsp19I	CCATGG	1 cut(s)	9
BspANI	GGCC	2 cut(s)	107, 395
BspHI	TCATGA	1 cut(s)	460
BspPI	GGATC	1 cut(s)	449
BsrDI	GCAATG	1 cut(s)	445
BsrFI	RCCGGY	1 cut(s)	257
BsrI	ACTGG	1 cut(s)	496
BssAI	RCCGGY	1 cut(s)	257
BssECI	CCNNGG	2 cut(s)	9, 396
BssMI	GATC	1 cut(s)	454
BssT1I	CCWWGG	1 cut(s)	9
Bst4CI	ACNGT	1 cut(s)	422
Bst6I	CTCTTC	1 cut(s)	362
BstDSI	CCRYGG	2 cut(s)	9, 396
BstF5I	GGATG	2 cut(s)	19, 150
BstKTI	GATC	1 cut(s)	457
BstMAI	GTCTC	1 cut(s)	403
BstMBI	GATC	1 cut(s)	454
BstMCI	CGRYCG	1 cut(s)	396
BstMWI	GCNNNNNNNGC	3 cut(s)	43, 46, 398
BstV1I	GCAGC	3 cut(s)	124, 326, 385
BstZI	CGGCCG	1 cut(s)	393
BsuRI	GGCC	2 cut(s)	107, 395
BtgI	CCRYGG	2 cut(s)	9, 396
BtgZI	GCGATG	1 cut(s)	300
BtsCI	GGATG	2 cut(s)	19, 150
CciI	TCATGA	1 cut(s)	460
Cfr10I	RCCGGY	1 cut(s)	257
Csp6I	GTAC	1 cut(s)	493
CviAII	CATG	3 cut(s)	10, 103, 461
CviQI	GTAC	1 cut(s)	493
DpnI	GATC	1 cut(s)	456
DpnII	GATC	1 cut(s)	454
EaeI	YGGCCR	2 cut(s)	105, 393
EagI	CGGCCG	1 cut(s)	393
Eam1104I	CTCTTC	1 cut(s)	362
EarI	CTCTTC	1 cut(s)	362
EciI	GGCGGA	3 cut(s)	35, 241, 416
EclXI	CGGCCG	1 cut(s)	393
Eco130I	CCWWGG	1 cut(s)	9
Eco52I	CGGCCG	1 cut(s)	393
EcoRI	GAATTC	1 cut(s)	295
EcoT14I	CCWWGG	1 cut(s)	9
ErhI	CCWWGG	1 cut(s)	9
FaeI	CATG	3 cut(s)	13, 106, 464
FaiI	YATR	3 cut(s)	11, 104, 462
FatI	CATG	3 cut(s)	9, 102, 460
FauI	CCCGC	1 cut(s)	235
FokI	GGATG	2 cut(s)	26, 137
FspBI	CTAG	1 cut(s)	468
GsaI	CCCAGC	1 cut(s)	220
HaeIII	GGCC	2 cut(s)	107, 395
HapII	CCGG	1 cut(s)	258
Hin1II	CATG	3 cut(s)	13, 106, 464
HinfI	GANTC	2 cut(s)	5, 23
HpaII	CCGG	1 cut(s)	258
HphI	GGTGA	3 cut(s)	131, 372, 434
Hpy166II	GTNNAC	1 cut(s)	493
Hpy188I	TCNGA	2 cut(s)	28, 130
Hpy188III	TCNNGA	1 cut(s)	461
Hpy8I	GTNNAC	1 cut(s)	493
HpyAV	CCTTC	4 cut(s)	129, 155, 202, 393
HpyCH4III	ACNGT	1 cut(s)	422
HpyF10VI	GCNNNNNNNGC	3 cut(s)	43, 46, 398
Hsp92II	CATG	3 cut(s)	13, 106, 464
Kzo9I	GATC	1 cut(s)	454
LmnI	GCTCC	3 cut(s)	120, 325, 484
LpnPI	CCDG	2 cut(s)	230, 271
Lsp1109I	GCAGC	3 cut(s)	124, 326, 385
MaeI	CTAG	1 cut(s)	468
MaeIII	GTNAC	1 cut(s)	51
MalI	GATC	1 cut(s)	456
MboI	GATC	1 cut(s)	454
MboII	GAAGA	1 cut(s)	379
MfeI	CAATTG	1 cut(s)	309
MhlI	GDGCHC	1 cut(s)	308
MlsI	TGGCCA	1 cut(s)	107
MluCI	AATT	2 cut(s)	295, 309
MluNI	TGGCCA	1 cut(s)	107
MlyI	GAGTC	1 cut(s)	32
MmeI	TCCRAC	2 cut(s)	153, 462
Mox20I	TGGCCA	1 cut(s)	107
MscI	TGGCCA	1 cut(s)	107
MseI	TTAA	1 cut(s)	348
Msp20I	TGGCCA	1 cut(s)	107
MspI	CCGG	1 cut(s)	258
MunI	CAATTG	1 cut(s)	309
MwoI	GCNNNNNNNGC	3 cut(s)	43, 46, 398
NcoI	CCATGG	1 cut(s)	9
NdeII	GATC	1 cut(s)	454
NlaIII	CATG	3 cut(s)	13, 106, 464
NmeAIII	GCCGAG	1 cut(s)	259
NmuCI	GTSAC	1 cut(s)	51
PagI	TCATGA	1 cut(s)	460
PleI	GAGTC	1 cut(s)	31
PpsI	GAGTC	1 cut(s)	31
PspFI	CCCAGC	1 cut(s)	216
RsaI	GTAC	1 cut(s)	494
RsaNI	GTAC	1 cut(s)	493
SaqAI	TTAA	1 cut(s)	348
Sau3AI	GATC	1 cut(s)	454
SchI	GAGTC	1 cut(s)	32
SduI	GDGCHC	1 cut(s)	308
Sse9I	AATT	2 cut(s)	295, 309
SspMI	CTAG	1 cut(s)	468
StyI	CCWWGG	1 cut(s)	9
TaaI	ACNGT	1 cut(s)	422
TaqI	TCGA	1 cut(s)	473
TasI	AATT	2 cut(s)	295, 309
TauI	GCSGC	9 cut(s)	40, 43, 46, 49, 223, 233, 285, 392, 395
Tru1I	TTAA	1 cut(s)	348
Tru9I	TTAA	1 cut(s)	348
TseFI	GTSAC	1 cut(s)	51
TseI	GCWGC	3 cut(s)	112, 339, 373
Tsp45I	GTSAC	1 cut(s)	51
TspDTI	ATGAA	3 cut(s)	334, 477, 491
XapI	RAATTY	1 cut(s)	295
XspI	CTAG	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.