Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8148590.1

Orthogroup ID

OG0006578

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 355

Gene Structure 355 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8148590.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 266 bp

atgggaagttcgagatcaaataggtccagaaattccagagcacagtcatcagcacaggaatgcttcaatgttcttttattctttggaatagtagatatttgtcagaattacaatatgagaaaacgccttgagcatgcttgcaagtccattaaatatgactcaaagtccattgcaactgtgaaccccaaagtttattcttctcgctttcaagagtttatgagcgaagtgtttctaccagaagtgtcggacgacttttctgatagccg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016307 GO:0016308 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0030258 GO:0044237 GO:0044238 GO:0044255 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04011 ko04070 ko04072 ko04139 ko04144 ko04666 ko04810 ko05231 map00562 map01100 map04011 map04070 map04072 map04139 map04144 map04666 map04810 map05231

Pfam Domains

Protein Families

PIP5K

Protein Analysis

89

Amino Acids

10.27

Weight (kDa)

8.93

Isoelectric Point (pI)

69.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006578)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01460 AT4G01190 AT4G01190 AT4G01190
fragaria_vesca	FvH4_7g15740 FvH4_7g15740 FvH4_7g15740 FvH4_7g15740
malus_domestica	MD01G1073900.v1.1 MD07G1142600.v1.1
prunus_persica	Prupe.2G182000_v2.0.a1 Prupe.2G182000_v2.0.a1
pyrus_communis	pycom01g10310
rosa_chinensis	RchiOBHm_Chr1g0358451
rosa_laevigata	RLG00000027957
rosa_multiflora	Rmu_co8148590.1_g000001 Rmu_sc0008220.1_g000008
rosa_roxburghii	Rroxscaffold_4G00297910
rosa_rugosa	Rorug01G0262000 Rorug01G0262100 Rorug01G0262200
rosa_samantha	Rh1AG276600 Rh1BG243100 Rh1CG260200 Rh1DG271400
rosa_wichuraiana	Rw1G024600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	31
AgsI	TTSAA	2 cut(s)	67, 209
AhdI	GACNNNNNGTC	1 cut(s)	163
Alw21I	GWGCWC	1 cut(s)	43
ApoI	RAATTY	1 cut(s)	31
Asp700I	GAANNNNTTC	1 cut(s)	228
AspS9I	GGNCC	1 cut(s)	24
AvaII	GGWCC	1 cut(s)	24
BarI	GAAGNNNNNNTAC	2 cut(s)	216, 248
Bbv12I	GWGCWC	1 cut(s)	43
Bme18I	GGWCC	1 cut(s)	24
BmeRI	GACNNNNNGTC	1 cut(s)	163
BmgT120I	GGNCC	1 cut(s)	24
BpuEI	CTTGAG	1 cut(s)	149
Bse3DI	GCAATG	1 cut(s)	168
BseMI	GCAATG	1 cut(s)	168
BsiHKAI	GWGCWC	1 cut(s)	43
BsmI	GAATGC	1 cut(s)	65
Bsp1286I	GDGCHC	1 cut(s)	43
Bsp143I	GATC	1 cut(s)	14
BsrDI	GCAATG	1 cut(s)	168
BssMI	GATC	1 cut(s)	14
Bst4CI	ACNGT	2 cut(s)	45, 178
BstC8I	GCNNGC	2 cut(s)	135, 139
BstKTI	GATC	1 cut(s)	17
BstMBI	GATC	1 cut(s)	14
BstNSI	RCATGY	1 cut(s)	137
Cac8I	GCNNGC	2 cut(s)	135, 139
Cfr13I	GGNCC	1 cut(s)	24
CviAII	CATG	1 cut(s)	134
CviJI	RGCY	1 cut(s)	264
CviKI_1	RGCY	1 cut(s)	264
DpnI	GATC	1 cut(s)	16
DpnII	GATC	1 cut(s)	14
DriI	GACNNNNNGTC	1 cut(s)	163
Eam1105I	GACNNNNNGTC	1 cut(s)	163
Eco47I	GGWCC	1 cut(s)	24
FaeI	CATG	1 cut(s)	137
FaiI	YATR	4 cut(s)	116, 135, 156, 218
FatI	CATG	1 cut(s)	133
Hin1II	CATG	1 cut(s)	137
HinfI	GANTC	1 cut(s)	158
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188I	TCNGA	3 cut(s)	105, 247, 259
Hpy188III	TCNNGA	4 cut(s)	12, 27, 36, 209
Hpy8I	GTNNAC	1 cut(s)	181
HpyCH4III	ACNGT	2 cut(s)	45, 178
HpyCH4V	TGCA	2 cut(s)	141, 173
Hsp92II	CATG	1 cut(s)	137
Kzo9I	GATC	1 cut(s)	14
LpnPI	CCDG	4 cut(s)	40, 41, 49, 249
MalI	GATC	1 cut(s)	16
MboI	GATC	1 cut(s)	14
MboII	GAAGA	1 cut(s)	189
MhlI	GDGCHC	1 cut(s)	43
MluCI	AATT	2 cut(s)	31, 106
MlyI	GAGTC	1 cut(s)	152
MmeI	TCCRAC	1 cut(s)	225
MroXI	GAANNNNTTC	1 cut(s)	228
MseI	TTAA	1 cut(s)	150
MslI	CAYNNNNRTG	1 cut(s)	58
Mva1269I	GAATGC	1 cut(s)	65
NdeII	GATC	1 cut(s)	14
NlaIII	CATG	1 cut(s)	137
NspI	RCATGY	1 cut(s)	137
PaeI	GCATGC	1 cut(s)	137
PctI	GAATGC	1 cut(s)	65
PdmI	GAANNNNTTC	1 cut(s)	228
PleI	GAGTC	1 cut(s)	152
PpsI	GAGTC	1 cut(s)	152
PspPI	GGNCC	1 cut(s)	24
RseI	CAYNNNNRTG	1 cut(s)	58
SaqAI	TTAA	1 cut(s)	150
Sau3AI	GATC	1 cut(s)	14
Sau96I	GGNCC	1 cut(s)	24
SchI	GAGTC	1 cut(s)	152
SduI	GDGCHC	1 cut(s)	43
SetI	ASST	1 cut(s)	26
SinI	GGWCC	1 cut(s)	24
SmiMI	CAYNNNNRTG	1 cut(s)	58
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
SphI	GCATGC	1 cut(s)	137
Sse9I	AATT	2 cut(s)	31, 106
TaaI	ACNGT	2 cut(s)	45, 178
TaqI	TCGA	1 cut(s)	11
TasI	AATT	2 cut(s)	31, 106
Tru1I	TTAA	1 cut(s)	150
Tru9I	TTAA	1 cut(s)	150
VpaK11BI	GGWCC	1 cut(s)	24
XapI	RAATTY	1 cut(s)	31
XceI	RCATGY	1 cut(s)	137
XmnI	GAANNNNTTC	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.