Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0006578

Physical Location & Seq

Genomic Coordinates Forward (+)

11105204 .. 11108809

Gene Structure 3606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g10310.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGGAGCTTCTGCAAGAAGAGCTTTCACCAGATGACTTCAAAGCTACTAAAACAAACTGTATAAAGTATACCAGGCAGGACTCGATACATGGAGCTTACTTCACAAATGACTTTGAATGGAAGGATTACAGTCCTGCAGTTTTCAGACGTTTGCTGGAGCTTGACAGTATAATTAGTTATGATGACTACCTGCTTACAGTATGTGGAGATGACACTCTAAGGGCGGTTTCTTTACCAGGACGGTACGGTAGGGTGTATATATTGCCTGGTGACAAACGCTTAGTGATTAAAACTCTGCGGAAATCAGAAAAGCAGGTGTACCTAGAAATGCTTCCAAACTATTACCGCCATGTTAAGAAGCACGGGGCCTCACTTTTGAAAAGACTGTATGGACTTCATGTTATCAGGCCACCGGGAGGTATCAAGGTTTACTTTGCGGTTTGCGCAAGTGTAATGCCGTCAGAACTTTGCTTATATAAGTGCTATGATCTCAAAGGCTCTTCAGTAGGTAGAGCCCGCAACAGATTACACGTCCACGACACGGCCATACTTAAGGATCTGGATTTTGATTTTTGCTTTTACTTGGATCCATTGGTCCATGCTCGGCTCTTAGCACAAATCAAGTACGACTGCGAGTTTTTGGAGGCCGAGGGCATCATGGATTATAGTTTATTGCTTGGTATGCACATAGATACTTCGCGTTCACGGGAAGAATCCATCTATCCCTTGGCAGGTTCAATTGATGAAAGAAATTCCAGAAGTTTTGATGCCAAAAAGCAAACAGATGATGCTTCTGAAGACGATGAAACCTCATCAGAGTTAACTCTTGCCGATATCTGCGATCTAATTGACAGGCCTGGTTTTAAATTTGGCGACAGACTGCCAGCACGCGCTGTCCGAGCCTTCAATAATGAAATGGAGAGTAAATCATATAGGTCCAGCAGATCACAGGAATGCTTCAATGTTCTTTTGTTCTTTGGAATAATAGACTTTTGTCAGAATTACAATATGAAGAAACGCATTGAGCATGCTTTCAAGGCAATCAAATATGACTCTAAGTCCATCAATACTGTGAACCCCAAAGCCTATTCTTCTCGCTTTCAAGAGTTTCTGAGCGAAGTATTTCTGCCCGAAGAGTCGGATGACTTTGATCTCAACCAGCAGGTTCCTTCTGCTCCTTCAAAATCTGACCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016307 GO:0016308 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0030258 GO:0044237 GO:0044238 GO:0044255 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04011 ko04070 ko04072 ko04139 ko04144 ko04666 ko04810 ko05231 map00562 map01100 map04011 map04070 map04072 map04139 map04144 map04666 map04810 map05231

Pfam Domains

Protein Families

PIP5K

Protein Analysis

399

Amino Acids

45.86

Weight (kDa)

5.81

Isoelectric Point (pI)

48.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006578)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01460 AT4G01190 AT4G01190 AT4G01190
fragaria_vesca	FvH4_7g15740 FvH4_7g15740 FvH4_7g15740 FvH4_7g15740
malus_domestica	MD01G1073900.v1.1 MD07G1142600.v1.1
prunus_persica	Prupe.2G182000_v2.0.a1 Prupe.2G182000_v2.0.a1
pyrus_communis	pycom01g10310
rosa_chinensis	RchiOBHm_Chr1g0358451
rosa_laevigata	RLG00000027957
rosa_multiflora	Rmu_co8148590.1_g000001 Rmu_sc0008220.1_g000008
rosa_roxburghii	Rroxscaffold_4G00297910
rosa_rugosa	Rorug01G0262000 Rorug01G0262100 Rorug01G0262200
rosa_samantha	Rh1AG276600 Rh1BG243100 Rh1CG260200 Rh1DG271400
rosa_wichuraiana	Rw1G024600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	304
Acc16I	TGCGCA	1 cut(s)	445
Acc36I	ACCTGC	4 cut(s)	198, 304, 722, 1153
AccI	GTMKAC	1 cut(s)	68
AccII	CGCG	2 cut(s)	700, 891
AciI	CCGC	5 cut(s)	224, 298, 346, 437, 517
AclWI	GGATC	3 cut(s)	564, 581, 594
AcoI	YGGCCR	1 cut(s)	543
AcsI	RAATTY	2 cut(s)	751, 866
AcuI	CTGAAG	2 cut(s)	486, 816
AfaI	GTAC	3 cut(s)	245, 320, 626
AfiI	CCNNNNNNNGG	3 cut(s)	416, 541, 731
AflII	CTTAAG	1 cut(s)	551
AflIII	ACRYGT	1 cut(s)	529
AgsI	TTSAA	9 cut(s)	40, 116, 379, 738, 907, 961, 1036, 1103, 1182
AhdI	GACNNNNNGTC	1 cut(s)	1057
AjiI	CACGTC	1 cut(s)	532
AjnI	CCWGG	4 cut(s)	71, 235, 265, 856
AluBI	AGCT	5 cut(s)	7, 22, 44, 95, 160
AluI	AGCT	5 cut(s)	7, 22, 44, 95, 160
AlwI	GGATC	3 cut(s)	564, 581, 594
AoxI	GGCC	5 cut(s)	366, 407, 543, 645, 854
ApoI	RAATTY	2 cut(s)	751, 866
Asp700I	GAANNNNTTC	2 cut(s)	330, 1122
AspLEI	GCGC	2 cut(s)	446, 893
AspS9I	GGNCC	3 cut(s)	366, 595, 936
AsuC2I	CCSGG	1 cut(s)	414
AsuHPI	GGTGA	2 cut(s)	18, 281
AvaII	GGWCC	2 cut(s)	595, 936
BamHI	GGATCC	1 cut(s)	586
BanII	GRGCYC	1 cut(s)	517
BbsI	GAAGAC	1 cut(s)	804
BccI	CCATC	2 cut(s)	725, 1070
BceAI	ACGGC	2 cut(s)	442, 558
BciT130I	CCWGG	4 cut(s)	73, 237, 267, 858
BcnI	CCSGG	1 cut(s)	414
BfaI	CTAG	1 cut(s)	323
BfmI	CTRYAG	1 cut(s)	135
BfrI	CTTAAG	1 cut(s)	551
BfuAI	ACCTGC	4 cut(s)	198, 304, 722, 1153
Bme1390I	CCNGG	5 cut(s)	73, 237, 267, 414, 858
Bme18I	GGWCC	2 cut(s)	595, 936
BmeRI	GACNNNNNGTC	1 cut(s)	1057
BmgBI	CACGTC	1 cut(s)	532
BmgT120I	GGNCC	3 cut(s)	366, 595, 936
BmiI	GGNNCC	3 cut(s)	367, 588, 1167
BmrFI	CCNGG	5 cut(s)	73, 237, 267, 414, 858
BmsI	GCATC	3 cut(s)	663, 757, 778
BoxI	GACNNNNGTC	1 cut(s)	993
BpiI	GAAGAC	1 cut(s)	804
BpmI	CTGGAG	1 cut(s)	176
BpuMI	CCSGG	1 cut(s)	414
BsaJI	CCNNGG	2 cut(s)	648, 726
Bsc4I	CCNNNNNNNGG	3 cut(s)	416, 541, 731
BseBI	CCWGG	4 cut(s)	73, 237, 267, 858
BseDI	CCNNGG	2 cut(s)	648, 726
BseGI	GGATG	1 cut(s)	1147
BseLI	CCNNNNNNNGG	3 cut(s)	416, 541, 731
BseMII	CTCAG	1 cut(s)	1103
Bsh1236I	CGCG	2 cut(s)	700, 891
BshFI	GGCC	5 cut(s)	368, 409, 545, 647, 856
BsiSI	CCGG	1 cut(s)	413
BslI	CCNNNNNNNGG	3 cut(s)	416, 541, 731
BsmI	GAATGC	1 cut(s)	959
BsnI	GGCC	5 cut(s)	368, 409, 545, 647, 856
Bsp1286I	GDGCHC	1 cut(s)	517
Bsp143I	GATC	6 cut(s)	487, 556, 586, 841, 944, 1150
BspACI	CCGC	5 cut(s)	224, 298, 346, 437, 517
BspANI	GGCC	5 cut(s)	368, 409, 545, 647, 856
BspCNI	CTCAG	1 cut(s)	1104
BspFNI	CGCG	2 cut(s)	700, 891
BspLI	GGNNCC	3 cut(s)	367, 588, 1167
BspMAI	CTGCAG	1 cut(s)	139
BspMI	ACCTGC	4 cut(s)	198, 304, 722, 1153
BspPI	GGATC	3 cut(s)	564, 581, 594
BspQI	GCTCTTC	2 cut(s)	12, 505
BspTI	CTTAAG	1 cut(s)	551
BssECI	CCNNGG	2 cut(s)	648, 726
BssMI	GATC	6 cut(s)	487, 556, 586, 841, 944, 1150
BssNAI	GTATAC	1 cut(s)	69
BssT1I	CCWWGG	1 cut(s)	726
Bst1107I	GTATAC	1 cut(s)	69
Bst2UI	CCWGG	4 cut(s)	73, 237, 267, 858
Bst4CI	ACNGT	8 cut(s)	59, 131, 167, 199, 243, 248, 387, 1072
Bst6I	CTCTTC	3 cut(s)	12, 505, 1128
BstAFI	CTTAAG	1 cut(s)	551
BstC8I	GCNNGC	4 cut(s)	517, 885, 889, 1029
BstDEI	CTNAG	5 cut(s)	218, 280, 610, 1056, 1112
BstF5I	GGATG	1 cut(s)	1147
BstFNI	CGCG	2 cut(s)	700, 891
BstHHI	GCGC	2 cut(s)	446, 893
BstKTI	GATC	6 cut(s)	490, 559, 589, 844, 947, 1153
BstMBI	GATC	6 cut(s)	487, 556, 586, 841, 944, 1150
BstMWI	GCNNNNNNNGC	5 cut(s)	19, 443, 682, 899, 1037
BstNI	CCWGG	4 cut(s)	73, 237, 267, 858
BstNSI	RCATGY	1 cut(s)	1031
BstPAI	GACNNNNGTC	1 cut(s)	993
BstSCI	CCNGG	5 cut(s)	71, 235, 265, 412, 856
BstSFI	CTRYAG	1 cut(s)	135
BstUI	CGCG	2 cut(s)	700, 891
BstV2I	GAAGAC	1 cut(s)	804
BstX2I	RGATCY	2 cut(s)	556, 586
BstYI	RGATCY	2 cut(s)	556, 586
BstZ17I	GTATAC	1 cut(s)	69
BsuRI	GGCC	5 cut(s)	368, 409, 545, 647, 856
BtrI	CACGTC	1 cut(s)	532
BtsCI	GGATG	1 cut(s)	1147
BveI	ACCTGC	4 cut(s)	198, 304, 722, 1153
Cac8I	GCNNGC	4 cut(s)	517, 885, 889, 1029
CfoI	GCGC	2 cut(s)	446, 893
Cfr13I	GGNCC	3 cut(s)	366, 595, 936
Csp6I	GTAC	3 cut(s)	244, 319, 625
CviAII	CATG	6 cut(s)	89, 350, 398, 599, 658, 1028
CviQI	GTAC	3 cut(s)	244, 319, 625
DdeI	CTNAG	5 cut(s)	218, 280, 610, 1056, 1112
DpnI	GATC	6 cut(s)	489, 558, 588, 843, 946, 1152
DpnII	GATC	6 cut(s)	487, 556, 586, 841, 944, 1150
DraI	TTTAAA	1 cut(s)	865
DriI	GACNNNNNGTC	1 cut(s)	1057
EaeI	YGGCCR	1 cut(s)	543
Eam1104I	CTCTTC	3 cut(s)	12, 505, 1128
Eam1105I	GACNNNNNGTC	1 cut(s)	1057
EarI	CTCTTC	3 cut(s)	12, 505, 1128
Eco130I	CCWWGG	1 cut(s)	726
Eco147I	AGGCCT	1 cut(s)	856
Eco24I	GRGCYC	1 cut(s)	517
Eco32I	GATATC	1 cut(s)	835
Eco47I	GGWCC	2 cut(s)	595, 936
Eco57I	CTGAAG	2 cut(s)	486, 816
EcoO109I	RGGNCCY	1 cut(s)	366
EcoRII	CCWGG	4 cut(s)	71, 235, 265, 856
EcoRV	GATATC	1 cut(s)	835
EcoT14I	CCWWGG	1 cut(s)	726
EcoT38I	GRGCYC	1 cut(s)	517
ErhI	CCWWGG	1 cut(s)	726
FaeI	CATG	6 cut(s)	92, 353, 401, 602, 661, 1031
FalI	AAGNNNNNCTT	3 cut(s)	38, 416, 448
FatI	CATG	6 cut(s)	88, 349, 397, 598, 657, 1027
FauI	CCCGC	1 cut(s)	524
FblI	GTMKAC	1 cut(s)	68
FokI	GGATG	1 cut(s)	1154
FriOI	GRGCYC	1 cut(s)	517
FspBI	CTAG	1 cut(s)	323
FspI	TGCGCA	1 cut(s)	445
GlaI	GCGC	2 cut(s)	445, 892
GsuI	CTGGAG	1 cut(s)	176
HaeIII	GGCC	5 cut(s)	368, 409, 545, 647, 856
HapII	CCGG	1 cut(s)	413
HhaI	GCGC	2 cut(s)	446, 893
Hin1II	CATG	6 cut(s)	92, 353, 401, 602, 661, 1031
Hin6I	GCGC	2 cut(s)	444, 891
HinP1I	GCGC	2 cut(s)	444, 891
HincII	GTYRAC	1 cut(s)	822
HindII	GTYRAC	1 cut(s)	822
HinfI	GANTC	4 cut(s)	80, 713, 1052, 1136
HpaI	GTTAAC	1 cut(s)	822
HpaII	CCGG	1 cut(s)	413
HphI	GGTGA	2 cut(s)	18, 281
Hpy166II	GTNNAC	7 cut(s)	69, 319, 430, 535, 704, 822, 1075
Hpy188III	TCNNGA	3 cut(s)	560, 756, 1103
Hpy8I	GTNNAC	7 cut(s)	69, 319, 430, 535, 704, 822, 1075
HpyAV	CCTTC	4 cut(s)	115, 913, 1179, 1188
HpyCH4III	ACNGT	8 cut(s)	59, 131, 167, 199, 243, 248, 387, 1072
HpyCH4IV	ACGT	2 cut(s)	148, 531
HpyCH4V	TGCA	3 cut(s)	13, 137, 685
HpyF10VI	GCNNNNNNNGC	5 cut(s)	19, 443, 682, 899, 1037
HpyF3I	CTNAG	5 cut(s)	218, 280, 610, 1056, 1112
HpySE526I	ACGT	2 cut(s)	148, 531
Hsp92II	CATG	6 cut(s)	92, 353, 401, 602, 661, 1031
HspAI	GCGC	2 cut(s)	444, 891
KspAI	GTTAAC	1 cut(s)	822
Kzo9I	GATC	6 cut(s)	487, 556, 586, 841, 944, 1150
LguI	GCTCTTC	2 cut(s)	12, 505
LmnI	GCTCC	4 cut(s)	4, 92, 157, 1180
LweI	GCATC	3 cut(s)	663, 757, 778
MaeI	CTAG	1 cut(s)	323
MaeII	ACGT	2 cut(s)	148, 531
MaeIII	GTNAC	1 cut(s)	269
MalI	GATC	6 cut(s)	489, 558, 588, 843, 946, 1152
MboI	GATC	6 cut(s)	487, 556, 586, 841, 944, 1150
MboII	GAAGA	7 cut(s)	29, 492, 722, 809, 1024, 1083, 1145
MfeI	CAATTG	1 cut(s)	738
MflI	RGATCY	2 cut(s)	556, 586
MhlI	GDGCHC	1 cut(s)	517
MluCI	AATT	6 cut(s)	171, 738, 751, 846, 866, 1000
MlyI	GAGTC	3 cut(s)	74, 1046, 1145
MmeI	TCCRAC	1 cut(s)	1119
MnlI	CCTC	5 cut(s)	379, 410, 637, 643, 820
MroXI	GAANNNNTTC	2 cut(s)	330, 1122
MseI	TTAA	6 cut(s)	288, 354, 552, 821, 864, 1195
MslI	CAYNNNNRTG	1 cut(s)	952
MspCI	CTTAAG	1 cut(s)	551
MspI	CCGG	1 cut(s)	413
MspR9I	CCNGG	5 cut(s)	73, 237, 267, 414, 858
MunI	CAATTG	1 cut(s)	738
Mva1269I	GAATGC	1 cut(s)	959
MvaI	CCWGG	4 cut(s)	73, 237, 267, 858
MvnI	CGCG	2 cut(s)	700, 891
MwoI	GCNNNNNNNGC	5 cut(s)	19, 443, 682, 899, 1037
NciI	CCSGG	1 cut(s)	414
NdeII	GATC	6 cut(s)	487, 556, 586, 841, 944, 1150
NlaIII	CATG	6 cut(s)	92, 353, 401, 602, 661, 1031
NlaIV	GGNNCC	3 cut(s)	367, 588, 1167
NmeAIII	GCCGAG	2 cut(s)	583, 673
NmuCI	GTSAC	1 cut(s)	269
NsbI	TGCGCA	1 cut(s)	445
NspI	RCATGY	1 cut(s)	1031
PaeI	GCATGC	1 cut(s)	1031
PaqCI	CACCTGC	1 cut(s)	304
PceI	AGGCCT	1 cut(s)	856
PciSI	GCTCTTC	2 cut(s)	12, 505
PcsI	WCGNNNNNNNCGW	1 cut(s)	895
PctI	GAATGC	1 cut(s)	959
PdmI	GAANNNNTTC	2 cut(s)	330, 1122
PfeI	GAWTC	1 cut(s)	713
PleI	GAGTC	3 cut(s)	74, 1046, 1144
PpsI	GAGTC	3 cut(s)	74, 1046, 1144
PshAI	GACNNNNGTC	1 cut(s)	993
Psp6I	CCWGG	4 cut(s)	71, 235, 265, 856
PspGI	CCWGG	4 cut(s)	71, 235, 265, 856
PspN4I	GGNNCC	3 cut(s)	367, 588, 1167
PspPI	GGNCC	3 cut(s)	366, 595, 936
PstI	CTGCAG	1 cut(s)	139
PsuI	RGATCY	2 cut(s)	556, 586
RsaI	GTAC	3 cut(s)	245, 320, 626
RsaNI	GTAC	3 cut(s)	244, 319, 625
RseI	CAYNNNNRTG	1 cut(s)	952
SapI	GCTCTTC	2 cut(s)	12, 505
SaqAI	TTAA	6 cut(s)	288, 354, 552, 821, 864, 1195
Sau3AI	GATC	6 cut(s)	487, 556, 586, 841, 944, 1150
Sau96I	GGNCC	3 cut(s)	366, 595, 936
SchI	GAGTC	3 cut(s)	74, 1046, 1145
ScrFI	CCNGG	5 cut(s)	73, 237, 267, 414, 858
SduI	GDGCHC	1 cut(s)	517
SfaNI	GCATC	3 cut(s)	663, 757, 778
SfcI	CTRYAG	1 cut(s)	135
SinI	GGWCC	2 cut(s)	595, 936
SmiMI	CAYNNNNRTG	1 cut(s)	952
SmlI	CTYRAG	1 cut(s)	551
SmoI	CTYRAG	1 cut(s)	551
SphI	GCATGC	1 cut(s)	1031
Sse9I	AATT	6 cut(s)	171, 738, 751, 846, 866, 1000
SseBI	AGGCCT	1 cut(s)	856
SsiI	CCGC	5 cut(s)	224, 298, 346, 437, 517
SspMI	CTAG	1 cut(s)	323
StuI	AGGCCT	1 cut(s)	856
StyD4I	CCNGG	5 cut(s)	71, 235, 265, 412, 856
StyI	CCWWGG	1 cut(s)	726
TaaI	ACNGT	8 cut(s)	59, 131, 167, 199, 243, 248, 387, 1072
TaiI	ACGT	2 cut(s)	151, 534
TaqI	TCGA	1 cut(s)	83
TasI	AATT	6 cut(s)	171, 738, 751, 846, 866, 1000
TfiI	GAWTC	1 cut(s)	713
Tru1I	TTAA	6 cut(s)	288, 354, 552, 821, 864, 1195
Tru9I	TTAA	6 cut(s)	288, 354, 552, 821, 864, 1195
TseFI	GTSAC	1 cut(s)	269
Tsp45I	GTSAC	1 cut(s)	269
TspDTI	ATGAA	5 cut(s)	386, 759, 819, 927, 1025
Vha464I	CTTAAG	1 cut(s)	551
VpaK11BI	GGWCC	2 cut(s)	595, 936
XapI	RAATTY	2 cut(s)	751, 866
XceI	RCATGY	1 cut(s)	1031
XcmI	CCANNNNNNNNNTGG	1 cut(s)	724
XmiI	GTMKAC	1 cut(s)	68
XmnI	GAANNNNTTC	2 cut(s)	330, 1122
XspI	CTAG	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.