AT4G01680
MYB Family

transcription

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0011469
Physical Location & Seq
Reverse (-)
715970 .. 717603
1634 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G01680.3

Sequence Viewer

Length: 1011 bp
ATGGGAAGACATTCATGTTGTTACAAACAGAAACTGAGGAAAGGACTTTGGTCTCCTGAAGAAGATGAGAAGCTTCTTCGTTACATCACTAAGTATGGTCATGGTTGCTGGAGCTCTGTCCCTAAACAAGCTGGTTTACAGAGATGTGGAAAAAGTTGTAGATTAAGATGGATAAATTATTTAAGACCAGATTTGAAGAGAGGAGCATTTTCTCAAGATGAAGAAAATCTCATTATTGAACTTCATGCCGTTCTTGGCAATAGATGGTCTCAGATAGCTGCACAGCTTCCTGGAAGAACCGACAATGAAATCAAGAATCTTTGGAATTCTTGTTTGAAGAAGAAATTGAGGCTGAGAGGAATTGACCCGGTTACACACAAGCTCTTAACCGAAATCGAAACCGGTACAGATGACAAAACAAAACCGGTTGAGAAGAGTCAACAGACCTACCTCGTTGAGACTGATGGCTCCTCTAGTACCACTACTTGTAGTACTAACCAAAACAACAACACTGATCATCTTTATACCGGAAATTTCGGTTTTCAACGGTTAAGTCTAGAAAACGGTTCAAGAATCGCAGCCGGTTCTGACCTCGGTATCTGGATTCCCCAAACCGGAAGAAACCATCATCATCATGTCGATGAAACCATCCCTAGTGCAGTGGTACTACCCGGTTCAATGTTCTCATCCGGTTTAACCGGTTATAGATCCTCCAATCTCGGTTTAATTGAATTGGAAAACTCATTCTCAACCGGGCCAATGATGACAGAGCATCAGCAAATTCAAGAGAGTAACTACAACAATTCAACATTCTTTGGAAATGGGAATCTGAATTGGGGATTAACAATGGAGGAAAATCAAAATCCATTCACAATATCGAATCATTCAAATTCGTCCTTATACAGTGATATAAAATCAGAGACCAATTTTTTTGGCACAGAGGCTACAAATGTTGGTATGTGGCCATGTAACCAGCTCCAGCCTCAGCAACATGCATATGGCCATATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

336

Amino Acids

37.89

Weight (kDa)

7.2

Isoelectric Point (pI)

43.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 2.1e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 75 2.2e-14 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 111 2.2e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 70 - 116 6.3e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01680 AT4G01680 AT4G01680
fragaria_vesca FvH4_5g06070
malus_domestica MD06G1167200.v1.1 MD14G1172900.v1.1
prunus_persica Prupe.5G167100_v2.0.a1 Prupe.5G167100_v2.0.a1 Prupe.5G167100_v2.0.a1
pyrus_communis pycom06g14990 pycom14g14420
rosa_chinensis RchiOBHm_Chr7g0192781
rosa_laevigata RLG00000004329
rosa_multiflora Rmu_sc0002040.1_g000020
rosa_roxburghii Rroxscaffold_3G00262690
rosa_rugosa Rorug07G0004600
rosa_samantha Rh7AG129700 Rh7BG131000 Rh7DG131900
rosa_wichuraiana Rw7G011100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 702
AcoI YGGCCR 2 cut(s) 962, 1000
AcsI RAATTY 4 cut(s) 325, 532, 780, 889
AcuI CTGAAG 1 cut(s) 78
AfaI GTAC 4 cut(s) 406, 478, 493, 666
AfiI CCNNNNNNNGG 1 cut(s) 614
AgeI ACCGGT 3 cut(s) 401, 424, 698
AjnI CCWGG 1 cut(s) 289
AluBI AGCT 7 cut(s) 73, 114, 131, 278, 286, 382, 976
AluI AGCT 7 cut(s) 73, 114, 131, 278, 286, 382, 976
Alw21I GWGCWC 1 cut(s) 116
Alw26I GTCTC 4 cut(s) 57, 273, 452, 914
AlwI GGATC 1 cut(s) 702
AlwNI CAGNNNCTG 1 cut(s) 34
AoxI GGCC 3 cut(s) 755, 962, 1000
ApeKI GCWGC 2 cut(s) 278, 578
ApoI RAATTY 4 cut(s) 325, 532, 780, 889
AsiGI ACCGGT 3 cut(s) 401, 424, 698
Asp700I GAANNNNTTC 1 cut(s) 10
AspS9I GGNCC 1 cut(s) 755
AsuC2I CCSGG 3 cut(s) 368, 672, 754
BaeI ACNNNNGTAYC 2 cut(s) 580, 613
BalI TGGCCA 2 cut(s) 964, 1002
BanII GRGCYC 1 cut(s) 116
BbsI GAAGAC 1 cut(s) 13
Bbv12I GWGCWC 1 cut(s) 116
BbvCI CCTCAGC 1 cut(s) 984
BbvI GCAGC 2 cut(s) 265, 590
BccI CCATC 5 cut(s) 162, 258, 458, 633, 656
BceAI ACGGC 1 cut(s) 233
BciT130I CCWGG 1 cut(s) 291
BclI TGATCA 1 cut(s) 514
BcnI CCSGG 3 cut(s) 368, 672, 754
BcoDI GTCTC 4 cut(s) 57, 273, 452, 914
BfaI CTAG 3 cut(s) 474, 557, 654
BisI GCNGC 2 cut(s) 279, 579
BlsI GCNGC 2 cut(s) 280, 580
BmcAI AGTACT 1 cut(s) 493
Bme1390I CCNGG 4 cut(s) 291, 368, 672, 754
BmgT120I GGNCC 1 cut(s) 755
BmiI GGNNCC 1 cut(s) 469
BmrFI CCNGG 4 cut(s) 291, 368, 672, 754
BmsI GCATC 1 cut(s) 781
BoxI GACNNNNGTC 1 cut(s) 49
BpiI GAAGAC 1 cut(s) 13
BpmI CTGGAG 2 cut(s) 130, 962
Bpu10I CCTNAGC 1 cut(s) 984
BpuEI CTTGAG 1 cut(s) 198
BpuMI CCSGG 3 cut(s) 368, 672, 754
BsaI GGTCTC 3 cut(s) 57, 273, 914
BsaJI CCNNGG 1 cut(s) 592
BsaWI WCCGGW 6 cut(s) 401, 424, 527, 614, 689, 698
Bsc4I CCNNNNNNNGG 1 cut(s) 614
Bse118I RCCGGY 4 cut(s) 401, 424, 581, 698
BseBI CCWGG 1 cut(s) 291
BseDI CCNNGG 1 cut(s) 592
BseGI GGATG 2 cut(s) 648, 686
BseLI CCNNNNNNNGG 1 cut(s) 614
BseMII CTCAG 4 cut(s) 26, 284, 344, 998
BseRI GAGGAG 2 cut(s) 216, 460
BseXI GCAGC 2 cut(s) 265, 590
BsgI GTGCAG 2 cut(s) 264, 678
BshFI GGCC 3 cut(s) 757, 964, 1002
BshTI ACCGGT 3 cut(s) 401, 424, 698
BsiHKAI GWGCWC 1 cut(s) 116
BslFI GGGAC 1 cut(s) 104
BslI CCNNNNNNNGG 1 cut(s) 614
BsmAI GTCTC 4 cut(s) 57, 273, 452, 914
BsmFI GGGAC 1 cut(s) 104
BsnI GGCC 3 cut(s) 757, 964, 1002
Bso31I GGTCTC 3 cut(s) 57, 273, 914
Bsp1286I GDGCHC 1 cut(s) 116
Bsp143I GATC 2 cut(s) 514, 707
BspANI GGCC 3 cut(s) 757, 964, 1002
BspCNI CTCAG 4 cut(s) 27, 283, 345, 997
BspLI GGNNCC 1 cut(s) 469
BspPI GGATC 1 cut(s) 702
BspTNI GGTCTC 3 cut(s) 57, 273, 914
BsrFI RCCGGY 4 cut(s) 401, 424, 581, 698
BssAI RCCGGY 4 cut(s) 401, 424, 581, 698
BssECI CCNNGG 1 cut(s) 592
BssMI GATC 2 cut(s) 514, 707
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 3 cut(s) 549, 566, 905
Bst6I CTCTTC 2 cut(s) 191, 428
BstDEI CTNAG 5 cut(s) 35, 90, 270, 353, 984
BstF5I GGATG 2 cut(s) 648, 686
BstKTI GATC 2 cut(s) 517, 710
BstMAI GTCTC 4 cut(s) 57, 273, 452, 914
BstMBI GATC 2 cut(s) 514, 707
BstNI CCWGG 1 cut(s) 291
BstNSI RCATGY 1 cut(s) 995
BstPAI GACNNNNGTC 1 cut(s) 49
BstSCI CCNGG 4 cut(s) 289, 366, 670, 752
BstV1I GCAGC 2 cut(s) 265, 590
BstV2I GAAGAC 1 cut(s) 13
BstX2I RGATCY 1 cut(s) 707
BstYI RGATCY 1 cut(s) 707
BsuRI GGCC 3 cut(s) 757, 964, 1002
BtsCI GGATG 2 cut(s) 648, 686
BtsI GCAGTG 1 cut(s) 666
BtsIMutI CAGTG 3 cut(s) 510, 666, 910
CaiI CAGNNNCTG 1 cut(s) 34
Cfr10I RCCGGY 4 cut(s) 401, 424, 581, 698
Cfr13I GGNCC 1 cut(s) 755
Csp6I GTAC 4 cut(s) 405, 477, 492, 665
CspAI ACCGGT 3 cut(s) 401, 424, 698
CviAII CATG 6 cut(s) 15, 101, 245, 635, 966, 992
CviQI GTAC 4 cut(s) 405, 477, 492, 665
DdeI CTNAG 5 cut(s) 35, 90, 270, 353, 984
DpnI GATC 2 cut(s) 516, 709
DpnII GATC 2 cut(s) 514, 707
EaeI YGGCCR 2 cut(s) 962, 1000
Eam1104I CTCTTC 2 cut(s) 191, 428
EarI CTCTTC 2 cut(s) 191, 428
Ecl136II GAGCTC 1 cut(s) 114
Eco24I GRGCYC 1 cut(s) 116
Eco31I GGTCTC 3 cut(s) 57, 273, 914
Eco53kI GAGCTC 1 cut(s) 114
Eco57I CTGAAG 1 cut(s) 78
EcoICRI GAGCTC 1 cut(s) 114
EcoRI GAATTC 1 cut(s) 325
EcoRII CCWGG 1 cut(s) 289
EcoT22I ATGCAT 1 cut(s) 997
EcoT38I GRGCYC 1 cut(s) 116
FaeI CATG 6 cut(s) 18, 104, 248, 638, 969, 995
FaqI GGGAC 1 cut(s) 104
FatI CATG 6 cut(s) 14, 100, 244, 634, 965, 991
FauNDI CATATG 1 cut(s) 997
FbaI TGATCA 1 cut(s) 514
Fnu4HI GCNGC 2 cut(s) 279, 579
FokI GGATG 2 cut(s) 635, 673
FriOI GRGCYC 1 cut(s) 116
Fsp4HI GCNGC 2 cut(s) 279, 579
FspBI CTAG 3 cut(s) 474, 557, 654
GluI GCNGC 2 cut(s) 279, 579
GsuI CTGGAG 2 cut(s) 130, 962
HaeIII GGCC 3 cut(s) 757, 964, 1002
Hin1II CATG 6 cut(s) 18, 104, 248, 638, 969, 995
HincII GTYRAC 1 cut(s) 440
HindII GTYRAC 1 cut(s) 440
HindIII AAGCTT 1 cut(s) 71
HinfI GANTC 6 cut(s) 316, 436, 573, 604, 826, 880
Hpy166II GTNNAC 2 cut(s) 137, 440
Hpy188I TCNGA 4 cut(s) 273, 589, 831, 919
Hpy188III TCNNGA 7 cut(s) 56, 215, 313, 557, 570, 601, 785
Hpy8I GTNNAC 2 cut(s) 137, 440
HpyCH4III ACNGT 3 cut(s) 549, 566, 905
HpyCH4V TGCA 3 cut(s) 281, 659, 995
HpyF3I CTNAG 5 cut(s) 35, 90, 270, 353, 984
Hsp92II CATG 6 cut(s) 18, 104, 248, 638, 969, 995
Ksp22I TGATCA 1 cut(s) 514
Kzo9I GATC 2 cut(s) 514, 707
LmnI GCTCC 4 cut(s) 111, 203, 473, 981
Lsp1109I GCAGC 2 cut(s) 265, 590
LweI GCATC 1 cut(s) 781
MaeI CTAG 3 cut(s) 474, 557, 654
MaeIII GTNAC 5 cut(s) 20, 80, 370, 791, 968
MalI GATC 2 cut(s) 516, 709
MboI GATC 2 cut(s) 514, 707
MflI RGATCY 1 cut(s) 707
MhlI GDGCHC 1 cut(s) 116
MlsI TGGCCA 2 cut(s) 964, 1002
MluNI TGGCCA 2 cut(s) 964, 1002
MlyI GAGTC 1 cut(s) 445
Mox20I TGGCCA 2 cut(s) 964, 1002
Mph1103I ATGCAT 1 cut(s) 997
MroXI GAANNNNTTC 1 cut(s) 10
MscI TGGCCA 2 cut(s) 964, 1002
MseI TTAA 7 cut(s) 164, 182, 386, 551, 695, 725, 842
MslI CAYNNNNRTG 3 cut(s) 633, 639, 996
Msp20I TGGCCA 2 cut(s) 964, 1002
MspR9I CCNGG 4 cut(s) 291, 368, 672, 754
MvaI CCWGG 1 cut(s) 291
NciI CCSGG 3 cut(s) 368, 672, 754
NdeI CATATG 1 cut(s) 997
NdeII GATC 2 cut(s) 514, 707
NlaIII CATG 6 cut(s) 18, 104, 248, 638, 969, 995
NlaIV GGNNCC 1 cut(s) 469
NsiI ATGCAT 1 cut(s) 997
NspI RCATGY 1 cut(s) 995
PdmI GAANNNNTTC 1 cut(s) 10
PfeI GAWTC 5 cut(s) 316, 573, 604, 826, 880
PfoI TCCNGGA 1 cut(s) 289
PinAI ACCGGT 3 cut(s) 401, 424, 698
PkrI GCNGC 2 cut(s) 280, 580
PleI GAGTC 1 cut(s) 444
PpsI GAGTC 1 cut(s) 444
PshAI GACNNNNGTC 1 cut(s) 49
Psp124BI GAGCTC 1 cut(s) 116
Psp6I CCWGG 1 cut(s) 289
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 1 cut(s) 469
PspPI GGNCC 1 cut(s) 755
PstNI CAGNNNCTG 1 cut(s) 34
PsuI RGATCY 1 cut(s) 707
RsaI GTAC 4 cut(s) 406, 478, 493, 666
RsaNI GTAC 4 cut(s) 405, 477, 492, 665
RseI CAYNNNNRTG 3 cut(s) 633, 639, 996
SacI GAGCTC 1 cut(s) 116
SaqAI TTAA 7 cut(s) 164, 182, 386, 551, 695, 725, 842
SatI GCNGC 2 cut(s) 279, 579
Sau3AI GATC 2 cut(s) 514, 707
Sau96I GGNCC 1 cut(s) 755
ScaI AGTACT 1 cut(s) 493
SchI GAGTC 1 cut(s) 445
ScrFI CCNGG 4 cut(s) 291, 368, 672, 754
SduI GDGCHC 1 cut(s) 116
SfaNI GCATC 1 cut(s) 781
SmiMI CAYNNNNRTG 3 cut(s) 633, 639, 996
SmlI CTYRAG 1 cut(s) 213
SmoI CTYRAG 1 cut(s) 213
SspMI CTAG 3 cut(s) 474, 557, 654
SstI GAGCTC 1 cut(s) 116
StyD4I CCNGG 4 cut(s) 289, 366, 670, 752
TaaI ACNGT 3 cut(s) 549, 566, 905
TaqI TCGA 3 cut(s) 396, 639, 878
TatI WGTACW 1 cut(s) 491
TfiI GAWTC 5 cut(s) 316, 573, 604, 826, 880
Tru1I TTAA 7 cut(s) 164, 182, 386, 551, 695, 725, 842
Tru9I TTAA 7 cut(s) 164, 182, 386, 551, 695, 725, 842
TscAI CASTG 3 cut(s) 517, 666, 910
TseI GCWGC 2 cut(s) 278, 578
TspDTI ATGAA 4 cut(s) 233, 234, 321, 657
TspRI CASTG 3 cut(s) 517, 666, 910
XapI RAATTY 4 cut(s) 325, 532, 780, 889
XbaI TCTAGA 1 cut(s) 556
XceI RCATGY 1 cut(s) 995
XmnI GAANNNNTTC 1 cut(s) 10
XspI CTAG 3 cut(s) 474, 557, 654
ZrmI AGTACT 1 cut(s) 493
Zsp2I ATGCAT 1 cut(s) 997
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.