Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0011469

Physical Location & Seq

Genomic Coordinates Reverse (-)

17147228 .. 17148603

Gene Structure 1376 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g14420.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGGACGCAATTCGTGTTGTTTGAAGCAGAAGTTAAGGAAAGGCCTCTGGTCACCAGAAGAAGATGAGAAGCTCTTCAACTACATCACTCAATTTGGTGTTGGCTGCTGGAGCTCAGTCCCAAAGCTTGCTGGTTTGCAGAGGTGTGGGAAGAGTTGCAGGTTGAGATGGATAAACTATTTGAGGCCTGATTTGAAGAGAGGAATGTTCTCACAACAGGAAGACGATCTCATTCTTAGTCTTCACGAAGTTATAGGCAACCGGTGGGCTCAAATTTCAGCACAATTGCCAGGAAGAACAGACAATGAGATAAAGAACTTTTGGAATTCATGTTTGAAGAAGAAGCTAATGAAGCAAGGAATTGACCCAACTACTCACAAGCCACTAACTGAAGAAGCGCAGAAAGAAGCGAACAACATTGATTGTTCAGACCTAAACGAGTCTTTGCCAATGCCAGAGCTTCCAACTATGCCAATAACCATGGCTTCCCAAGGCCCAACATTTCTTCTCAATGATTCAAATTACTATGATGGAAACGGAGGAGTCCTCAACAATCCACAAGCCTCAAGAGCCTTTGATTCTCTATCTTATTTCGAGTTTCAACCCGGTTTTGAGTCATCAGCCTACAATTCAGATCTTGTTGCCGCTCAATACCACCATACCAACATTAGACCTTATGAGTCAAGCTCAAATTTTGGGTTTACTTCAATGCCAAGTTTGGCAAATTCGGACCATGGAAGCATGTCCGGCACAGATTTTTCGGACAATTCAGCTTCAAGACTCGGCTCATTTTTCATGAATGAGGTTAAGGAAAGCTCGAGCAATAGCTCGAACGTCGGCAGCTATACAGCAGGGTGTCATATGAGCAGCAACAACGTAATTGAAAATGCGGCTTTTCCATGGGAAACAGATAACAAACTAGACTCCTTGTTTCAGTTTCATTTCAATGGGATAAAGTCTGAGGAAATTATCAAACCCAATAGTTCTTGGCAACAACAAGGGCAGCTTGTTCATCACCATGCTCAAAATTCAGTAGAATTCAGTAGCTATCCGTTGACGTCGTTGTCAGAAGATCTAACTGGTGCAAATTTTGATGTTTTCCAGAATATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

371

Amino Acids

41.48

Weight (kDa)

5.39

Isoelectric Point (pI)

55.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011469)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01680 AT4G01680 AT4G01680
fragaria_vesca	FvH4_5g06070
malus_domestica	MD06G1167200.v1.1 MD14G1172900.v1.1
prunus_persica	Prupe.5G167100_v2.0.a1 Prupe.5G167100_v2.0.a1 Prupe.5G167100_v2.0.a1
pyrus_communis	pycom06g14990 pycom14g14420
rosa_chinensis	RchiOBHm_Chr7g0192781
rosa_laevigata	RLG00000004329
rosa_multiflora	Rmu_sc0002040.1_g000020
rosa_roxburghii	Rroxscaffold_3G00262690
rosa_rugosa	Rorug07G0004600
rosa_samantha	Rh7AG129700 Rh7BG131000 Rh7DG131900
rosa_wichuraiana	Rw7G011100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1063
AatII	GACGTC	1 cut(s)	1061
Acc36I	ACCTGC	1 cut(s)	150
AccBSI	CCGCTC	1 cut(s)	647
AciI	CCGC	2 cut(s)	645, 890
AcsI	RAATTY	7 cut(s)	273, 325, 691, 724, 1027, 1037, 1087
AcuI	CTGAAG	1 cut(s)	411
AcyI	GRCGYC	1 cut(s)	1058
AgeI	ACCGGT	1 cut(s)	261
AjnI	CCWGG	1 cut(s)	289
Alw21I	GWGCWC	1 cut(s)	116
Ama87I	CYCGRG	1 cut(s)	817
AoxI	GGCC	3 cut(s)	43, 185, 493
ApeKI	GCWGC	4 cut(s)	105, 840, 867, 1003
ApoI	RAATTY	7 cut(s)	273, 325, 691, 724, 1027, 1037, 1087
AsiGI	ACCGGT	1 cut(s)	261
Asp700I	GAANNNNTTC	1 cut(s)	74
AspLEI	GCGC	1 cut(s)	400
AspS9I	GGNCC	2 cut(s)	494, 730
AsuC2I	CCSGG	1 cut(s)	606
AsuHPI	GGTGA	2 cut(s)	45, 1007
AvaI	CYCGRG	1 cut(s)	817
AvaII	GGWCC	1 cut(s)	730
BanII	GRGCYC	2 cut(s)	116, 271
BbsI	GAAGAC	2 cut(s)	228, 233
Bbv12I	GWGCWC	1 cut(s)	116
BbvI	GCAGC	4 cut(s)	92, 852, 879, 1015
BccI	CCATC	2 cut(s)	162, 524
BciT130I	CCWGG	1 cut(s)	291
BcnI	CCSGG	1 cut(s)	606
BfaI	CTAG	1 cut(s)	920
BfuAI	ACCTGC	1 cut(s)	150
BglII	AGATCT	2 cut(s)	634, 1072
BisI	GCNGC	6 cut(s)	106, 645, 841, 868, 891, 1004
BlsI	GCNGC	6 cut(s)	107, 646, 842, 869, 892, 1005
Bme1390I	CCNGG	2 cut(s)	291, 606
Bme18I	GGWCC	1 cut(s)	730
BmeT110I	CYCGRG	1 cut(s)	817
BmgT120I	GGNCC	2 cut(s)	494, 730
BmrFI	CCNGG	2 cut(s)	291, 606
BpiI	GAAGAC	2 cut(s)	228, 233
BplI	GAGNNNNNCTC	4 cut(s)	531, 563, 671, 703
BpmI	CTGGAG	1 cut(s)	130
BpuEI	CTTGAG	1 cut(s)	550
BpuMI	CCSGG	1 cut(s)	606
BsaHI	GRCGYC	1 cut(s)	1058
BsaJI	CCNNGG	4 cut(s)	480, 490, 733, 899
BsaWI	WCCGGW	1 cut(s)	261
Bse118I	RCCGGY	1 cut(s)	261
Bse1I	ACTGG	1 cut(s)	1084
BseBI	CCWGG	1 cut(s)	291
BseDI	CCNNGG	4 cut(s)	480, 490, 733, 899
BseMII	CTCAG	2 cut(s)	129, 951
BseNI	ACTGG	1 cut(s)	1084
BseRI	GAGGAG	1 cut(s)	555
BseXI	GCAGC	4 cut(s)	92, 852, 879, 1015
BshFI	GGCC	3 cut(s)	45, 187, 495
BshTI	ACCGGT	1 cut(s)	261
BsiHKAI	GWGCWC	1 cut(s)	116
BsiHKCI	CYCGRG	1 cut(s)	817
BsiSI	CCGG	3 cut(s)	262, 606, 747
BslFI	GGGAC	2 cut(s)	18, 104
BsmFI	GGGAC	2 cut(s)	18, 104
BsnI	GGCC	3 cut(s)	45, 187, 495
BsoBI	CYCGRG	1 cut(s)	817
Bsp1286I	GDGCHC	2 cut(s)	116, 271
Bsp143I	GATC	3 cut(s)	226, 634, 1072
Bsp19I	CCATGG	3 cut(s)	480, 733, 899
BspACI	CCGC	2 cut(s)	645, 890
BspANI	GGCC	3 cut(s)	45, 187, 495
BspCNI	CTCAG	2 cut(s)	128, 952
BspHI	TCATGA	1 cut(s)	795
BspMI	ACCTGC	1 cut(s)	150
BspQI	GCTCTTC	1 cut(s)	80
BsrBI	CCGCTC	1 cut(s)	647
BsrFI	RCCGGY	1 cut(s)	261
BsrI	ACTGG	1 cut(s)	1084
BssAI	RCCGGY	1 cut(s)	261
BssECI	CCNNGG	4 cut(s)	480, 490, 733, 899
BssMI	GATC	3 cut(s)	226, 634, 1072
BssNI	GRCGYC	1 cut(s)	1058
BssT1I	CCWWGG	4 cut(s)	480, 490, 733, 899
Bst2UI	CCWGG	1 cut(s)	291
Bst6I	CTCTTC	3 cut(s)	80, 146, 191
BstACI	GRCGYC	1 cut(s)	1058
BstC8I	GCNNGC	1 cut(s)	129
BstDEI	CTNAG	3 cut(s)	115, 236, 960
BstDSI	CCRYGG	3 cut(s)	480, 733, 899
BstEII	GGTNACC	1 cut(s)	51
BstHHI	GCGC	1 cut(s)	400
BstKTI	GATC	3 cut(s)	229, 637, 1075
BstMBI	GATC	3 cut(s)	226, 634, 1072
BstMWI	GCNNNNNNNGC	4 cut(s)	111, 352, 569, 747
BstNI	CCWGG	1 cut(s)	291
BstNSI	RCATGY	1 cut(s)	745
BstPI	GGTNACC	1 cut(s)	51
BstSCI	CCNGG	2 cut(s)	289, 604
BstV1I	GCAGC	4 cut(s)	92, 852, 879, 1015
BstV2I	GAAGAC	2 cut(s)	228, 233
BstX2I	RGATCY	2 cut(s)	634, 1072
BstYI	RGATCY	2 cut(s)	634, 1072
BsuRI	GGCC	3 cut(s)	45, 187, 495
BtgI	CCRYGG	3 cut(s)	480, 733, 899
BveI	ACCTGC	1 cut(s)	150
Cac8I	GCNNGC	1 cut(s)	129
CciI	TCATGA	1 cut(s)	795
CfoI	GCGC	1 cut(s)	400
Cfr10I	RCCGGY	1 cut(s)	261
Cfr13I	GGNCC	2 cut(s)	494, 730
CseI	GACGC	1 cut(s)	15
CspAI	ACCGGT	1 cut(s)	261
CviAII	CATG	7 cut(s)	330, 481, 734, 742, 796, 900, 1019
DdeI	CTNAG	3 cut(s)	115, 236, 960
DpnI	GATC	3 cut(s)	228, 636, 1074
DpnII	GATC	3 cut(s)	226, 634, 1072
DrdI	GACNNNNNNGTC	1 cut(s)	1063
DseDI	GACNNNNNNGTC	1 cut(s)	1063
Eam1104I	CTCTTC	3 cut(s)	80, 146, 191
EarI	CTCTTC	3 cut(s)	80, 146, 191
Ecl136II	GAGCTC	1 cut(s)	114
Eco130I	CCWWGG	4 cut(s)	480, 490, 733, 899
Eco147I	AGGCCT	2 cut(s)	45, 187
Eco24I	GRGCYC	2 cut(s)	116, 271
Eco47I	GGWCC	1 cut(s)	730
Eco53kI	GAGCTC	1 cut(s)	114
Eco57I	CTGAAG	1 cut(s)	411
Eco88I	CYCGRG	1 cut(s)	817
Eco91I	GGTNACC	1 cut(s)	51
EcoICRI	GAGCTC	1 cut(s)	114
EcoO65I	GGTNACC	1 cut(s)	51
EcoRI	GAATTC	2 cut(s)	325, 1037
EcoRII	CCWGG	1 cut(s)	289
EcoT14I	CCWWGG	4 cut(s)	480, 490, 733, 899
EcoT38I	GRGCYC	2 cut(s)	116, 271
ErhI	CCWWGG	4 cut(s)	480, 490, 733, 899
FaeI	CATG	7 cut(s)	333, 484, 737, 745, 799, 903, 1022
FalI	AAGNNNNNCTT	2 cut(s)	990, 1022
FaqI	GGGAC	2 cut(s)	18, 104
FatI	CATG	7 cut(s)	329, 480, 733, 741, 795, 899, 1018
FauNDI	CATATG	1 cut(s)	861
Fnu4HI	GCNGC	6 cut(s)	106, 645, 841, 868, 891, 1004
FriOI	GRGCYC	2 cut(s)	116, 271
Fsp4HI	GCNGC	6 cut(s)	106, 645, 841, 868, 891, 1004
FspBI	CTAG	1 cut(s)	920
GlaI	GCGC	1 cut(s)	399
GluI	GCNGC	6 cut(s)	106, 645, 841, 868, 891, 1004
GsuI	CTGGAG	1 cut(s)	130
HaeIII	GGCC	3 cut(s)	45, 187, 495
HapII	CCGG	3 cut(s)	262, 606, 747
HgaI	GACGC	1 cut(s)	15
HhaI	GCGC	1 cut(s)	400
Hin1I	GRCGYC	1 cut(s)	1058
Hin1II	CATG	7 cut(s)	333, 484, 737, 745, 799, 903, 1022
Hin6I	GCGC	1 cut(s)	398
HinP1I	GCGC	1 cut(s)	398
HincII	GTYRAC	1 cut(s)	1056
HindII	GTYRAC	1 cut(s)	1056
HindIII	AAGCTT	1 cut(s)	125
HinfI	GANTC	8 cut(s)	440, 515, 543, 578, 614, 680, 780, 923
HpaII	CCGG	3 cut(s)	262, 606, 747
HphI	GGTGA	2 cut(s)	45, 1007
Hpy166II	GTNNAC	2 cut(s)	702, 1056
Hpy188I	TCNGA	6 cut(s)	430, 634, 730, 763, 961, 1069
Hpy188III	TCNNGA	5 cut(s)	245, 567, 777, 796, 1102
Hpy8I	GTNNAC	2 cut(s)	702, 1056
Hpy99I	CGWCG	2 cut(s)	839, 1063
HpyCH4IV	ACGT	3 cut(s)	834, 876, 1058
HpyCH4V	TGCA	3 cut(s)	139, 159, 1085
HpyF10VI	GCNNNNNNNGC	4 cut(s)	111, 352, 569, 747
HpyF3I	CTNAG	3 cut(s)	115, 236, 960
HpySE526I	ACGT	3 cut(s)	834, 876, 1058
Hsp92I	GRCGYC	1 cut(s)	1058
Hsp92II	CATG	7 cut(s)	333, 484, 737, 745, 799, 903, 1022
HspAI	GCGC	1 cut(s)	398
Kzo9I	GATC	3 cut(s)	226, 634, 1072
LguI	GCTCTTC	1 cut(s)	80
LmnI	GCTCC	1 cut(s)	111
Lsp1109I	GCAGC	4 cut(s)	92, 852, 879, 1015
MaeI	CTAG	1 cut(s)	920
MaeII	ACGT	3 cut(s)	834, 876, 1058
MaeIII	GTNAC	1 cut(s)	51
MalI	GATC	3 cut(s)	228, 636, 1074
MbiI	CCGCTC	1 cut(s)	647
MboI	GATC	3 cut(s)	226, 634, 1072
MfeI	CAATTG	1 cut(s)	284
MflI	RGATCY	2 cut(s)	634, 1072
MhlI	GDGCHC	2 cut(s)	116, 271
MlyI	GAGTC	6 cut(s)	449, 552, 623, 689, 774, 917
MmeI	TCCRAC	1 cut(s)	488
MnlI	CCTC	9 cut(s)	56, 135, 177, 194, 533, 557, 574, 796, 955
MroXI	GAANNNNTTC	1 cut(s)	74
MseI	TTAA	2 cut(s)	35, 807
MslI	CAYNNNNRTG	2 cut(s)	945, 1017
MspI	CCGG	3 cut(s)	262, 606, 747
MspR9I	CCNGG	2 cut(s)	291, 606
MunI	CAATTG	1 cut(s)	284
MvaI	CCWGG	1 cut(s)	291
MwoI	GCNNNNNNNGC	4 cut(s)	111, 352, 569, 747
NciI	CCSGG	1 cut(s)	606
NcoI	CCATGG	3 cut(s)	480, 733, 899
NdeI	CATATG	1 cut(s)	861
NdeII	GATC	3 cut(s)	226, 634, 1072
NlaIII	CATG	7 cut(s)	333, 484, 737, 745, 799, 903, 1022
NmeAIII	GCCGAG	1 cut(s)	762
NmuCI	GTSAC	1 cut(s)	51
NspI	RCATGY	1 cut(s)	745
PaeR7I	CTCGAG	1 cut(s)	817
PagI	TCATGA	1 cut(s)	795
PceI	AGGCCT	2 cut(s)	45, 187
PciSI	GCTCTTC	1 cut(s)	80
PdmI	GAANNNNTTC	1 cut(s)	74
PfeI	GAWTC	2 cut(s)	515, 578
PinAI	ACCGGT	1 cut(s)	261
PkrI	GCNGC	6 cut(s)	107, 646, 842, 869, 892, 1005
PleI	GAGTC	6 cut(s)	448, 551, 622, 688, 774, 917
PpsI	GAGTC	6 cut(s)	448, 551, 622, 688, 774, 917
Psp124BI	GAGCTC	1 cut(s)	116
Psp6I	CCWGG	1 cut(s)	289
PspEI	GGTNACC	1 cut(s)	51
PspGI	CCWGG	1 cut(s)	289
PspPI	GGNCC	2 cut(s)	494, 730
PspXI	VCTCGAGB	1 cut(s)	817
PsuI	RGATCY	2 cut(s)	634, 1072
RseI	CAYNNNNRTG	2 cut(s)	945, 1017
SacI	GAGCTC	1 cut(s)	116
SapI	GCTCTTC	1 cut(s)	80
SaqAI	TTAA	2 cut(s)	35, 807
SatI	GCNGC	6 cut(s)	106, 645, 841, 868, 891, 1004
Sau3AI	GATC	3 cut(s)	226, 634, 1072
Sau96I	GGNCC	2 cut(s)	494, 730
SchI	GAGTC	6 cut(s)	449, 552, 623, 689, 774, 917
ScrFI	CCNGG	2 cut(s)	291, 606
SduI	GDGCHC	2 cut(s)	116, 271
Sfr274I	CTCGAG	1 cut(s)	817
SinI	GGWCC	1 cut(s)	730
SlaI	CTCGAG	1 cut(s)	817
SmiMI	CAYNNNNRTG	2 cut(s)	945, 1017
SmlI	CTYRAG	2 cut(s)	565, 817
SmoI	CTYRAG	2 cut(s)	565, 817
SseBI	AGGCCT	2 cut(s)	45, 187
SsiI	CCGC	2 cut(s)	645, 890
SspI	AATATT	1 cut(s)	1108
SspMI	CTAG	1 cut(s)	920
SstI	GAGCTC	1 cut(s)	116
StuI	AGGCCT	2 cut(s)	45, 187
StyD4I	CCNGG	2 cut(s)	289, 604
StyI	CCWWGG	4 cut(s)	480, 490, 733, 899
TaiI	ACGT	3 cut(s)	837, 879, 1061
TaqI	TCGA	3 cut(s)	594, 818, 830
TauI	GCSGC	2 cut(s)	647, 893
TfiI	GAWTC	2 cut(s)	515, 578
Tru1I	TTAA	2 cut(s)	35, 807
Tru9I	TTAA	2 cut(s)	35, 807
TseFI	GTSAC	1 cut(s)	51
TseI	GCWGC	4 cut(s)	105, 840, 867, 1003
Tsp45I	GTSAC	1 cut(s)	51
TspDTI	ATGAA	6 cut(s)	318, 365, 784, 812, 929, 1001
TspGWI	ACGGA	2 cut(s)	552, 1041
VpaK11BI	GGWCC	1 cut(s)	730
XapI	RAATTY	7 cut(s)	273, 325, 691, 724, 1027, 1037, 1087
XceI	RCATGY	1 cut(s)	745
XhoI	CTCGAG	1 cut(s)	817
XmnI	GAANNNNTTC	1 cut(s)	74
XspI	CTAG	1 cut(s)	920
ZraI	GACGTC	1 cut(s)	1059

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.