MD06G1167200.v1.1
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0011469
Physical Location & Seq
Reverse (-)
30740482 .. 30742343
1862 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1167200.v1.1.491

Sequence Viewer

Length: 1125 bp
ATGGGACGCCATTCGTGTTGTTTGAAGCAGAAGTTAAGGAAAGGCCTCTGGTCACCGGAAGAAGATGAGAAGCTCTTCAACTACATCACTCGATTTGGTGTTGGCTGCTGGAGCTCAGTCCCAAAGCATGCTGGTTTGCAGAGGTGTGGAAAGAGTTGCAGATTGAGATGGATAAATTATTTGAGGCCTGATTTGAAGAGAGGAATGTTCTCACAACAGGAAGAGGATCTCATTCTTAGTCTTCACGAAGTTCTAGGCAACCGGTGGGCTCAAATTGCAGCACAATTGCCAGGAAGAACCGACAATGAGATAAAGAACTTTTGGAATTCATGTTTGAAGAAGAAGCTAATGAAGCAAGGAATTGACCCAACCACCCACAAGCCACTAACTGAAGAAGAACTGAAAGAAAAGAAGAACATTGATTGTTCAGACCTAAAAGAGTCTTTGCCAATGCCAGAGCTTCCAACTATGCCAATAACCATGGCTTCCCAAGGCCCAACATTTCTTCTCAATGATTCAAACTACTATGATGGAAATGGAGGAGTCCTCAACAATCCACAAGCCTCAAGAGCCTTTGATTCTCTATCTTATTTCGAATACCAATCCGGTTTCGAGTCATCATCAGCCTATAATTCAGATCTTGTTGCCACTCAATACCACCATACCAACATTAGACCTTATGAGTCAAGCTCAAATTTTGGGTTTACTTCAATGCCAAGTTTGGCAAATTCAGACCACGGAAGCATGTCCGGCACAGATTTTTCGGACAATTCAGCTTCGAGACTCAGCTCATTTTTCATGAATGAGGTTAAGGAAAGCTCGAGCAATAGCTCGAACGTCAGCAGCTATGCAGCAGGGTATCATATGACCAGTAACAACGGCAACAACACAATCGAAAATGCGGCTTTTTCATGGGAAACAGATAACAAACTAGACTCTTTGTTTCAGTTTCATGTCAATGGGATAAAGTCTGAGGAAATGATCAAACCCACTAGTTCTTGGCAACAACAAGGGCAGCTTGTTTATCACCATGCTCAAAATTCAGTAGATTTCAGTAGCTATCCGTTAACGTCGTTGTCAGAAGATCTAACAGGTGAAAATTTTGATGTTTTCCAGAATATTTGA

Protein Analysis

375

Amino Acids

42.21

Weight (kDa)

5.69

Isoelectric Point (pI)

55.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 3e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 76 3.6e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 112 1.6e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 70 - 120 2.6e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01680 AT4G01680 AT4G01680
fragaria_vesca FvH4_5g06070
malus_domestica MD06G1167200.v1.1 MD14G1172900.v1.1
prunus_persica Prupe.5G167100_v2.0.a1 Prupe.5G167100_v2.0.a1 Prupe.5G167100_v2.0.a1
pyrus_communis pycom06g14990 pycom14g14420
rosa_chinensis RchiOBHm_Chr7g0192781
rosa_laevigata RLG00000004329
rosa_multiflora Rmu_sc0002040.1_g000020
rosa_roxburghii Rroxscaffold_3G00262690
rosa_rugosa Rorug07G0004600
rosa_samantha Rh7AG129700 Rh7BG131000 Rh7DG131900
rosa_wichuraiana Rw7G011100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 902
AclWI GGATC 1 cut(s) 234
AcsI RAATTY 5 cut(s) 325, 694, 727, 1039, 1099
AcuI CTGAAG 1 cut(s) 411
AcyI GRCGYC 1 cut(s) 7
AgeI ACCGGT 1 cut(s) 261
AgsI TTSAA 6 cut(s) 25, 79, 196, 337, 519, 711
AhlI ACTAGT 1 cut(s) 992
AjnI CCWGG 1 cut(s) 289
Alw21I GWGCWC 1 cut(s) 116
Alw26I GTCTC 1 cut(s) 775
AlwI GGATC 1 cut(s) 234
Ama87I CYCGRG 1 cut(s) 820
AoxI GGCC 3 cut(s) 43, 185, 493
ApeKI GCWGC 5 cut(s) 105, 278, 843, 851, 1015
ApoI RAATTY 5 cut(s) 325, 694, 727, 1039, 1099
AsiGI ACCGGT 1 cut(s) 261
Asp700I GAANNNNTTC 1 cut(s) 74
AspS9I GGNCC 1 cut(s) 494
AsuHPI GGTGA 3 cut(s) 45, 1019, 1106
AsuII TTCGAA 1 cut(s) 594
AvaI CYCGRG 1 cut(s) 820
BanII GRGCYC 2 cut(s) 116, 271
BbsI GAAGAC 1 cut(s) 233
Bbv12I GWGCWC 1 cut(s) 116
BbvI GCAGC 5 cut(s) 92, 290, 855, 863, 1027
BccI CCATC 2 cut(s) 162, 524
BceAI ACGGC 1 cut(s) 895
BciT130I CCWGG 1 cut(s) 291
BclI TGATCA 1 cut(s) 981
BcoDI GTCTC 1 cut(s) 775
BcuI ACTAGT 1 cut(s) 992
BfaI CTAG 3 cut(s) 254, 932, 993
BglII AGATCT 2 cut(s) 637, 1084
BisI GCNGC 6 cut(s) 106, 279, 844, 852, 903, 1016
BlsI GCNGC 6 cut(s) 107, 280, 845, 853, 904, 1017
Bme1390I CCNGG 1 cut(s) 291
BmeT110I CYCGRG 1 cut(s) 820
BmgT120I GGNCC 1 cut(s) 494
BmrFI CCNGG 1 cut(s) 291
BpiI GAAGAC 1 cut(s) 233
BplI GAGNNNNNCTC 4 cut(s) 531, 563, 674, 706
BpmI CTGGAG 1 cut(s) 130
Bpu14I TTCGAA 1 cut(s) 594
BpuEI CTTGAG 1 cut(s) 550
BsaHI GRCGYC 1 cut(s) 7
BsaJI CCNNGG 3 cut(s) 480, 490, 736
BsaWI WCCGGW 3 cut(s) 55, 261, 605
Bse118I RCCGGY 1 cut(s) 261
Bse1I ACTGG 1 cut(s) 870
BseBI CCWGG 1 cut(s) 291
BseDI CCNNGG 3 cut(s) 480, 490, 736
BseMII CTCAG 3 cut(s) 129, 799, 963
BseNI ACTGG 1 cut(s) 870
BseRI GAGGAG 1 cut(s) 555
BseXI GCAGC 5 cut(s) 92, 290, 855, 863, 1027
BshFI GGCC 3 cut(s) 45, 187, 495
BshTI ACCGGT 1 cut(s) 261
BsiHKAI GWGCWC 1 cut(s) 116
BsiHKCI CYCGRG 1 cut(s) 820
BsiSI CCGG 4 cut(s) 56, 262, 606, 750
BslFI GGGAC 2 cut(s) 18, 104
BsmAI GTCTC 1 cut(s) 775
BsmFI GGGAC 2 cut(s) 18, 104
BsnI GGCC 3 cut(s) 45, 187, 495
BsoBI CYCGRG 1 cut(s) 820
Bsp119I TTCGAA 1 cut(s) 594
Bsp1286I GDGCHC 2 cut(s) 116, 271
Bsp143I GATC 4 cut(s) 226, 637, 981, 1084
Bsp19I CCATGG 1 cut(s) 480
BspACI CCGC 1 cut(s) 902
BspANI GGCC 3 cut(s) 45, 187, 495
BspCNI CTCAG 3 cut(s) 128, 798, 964
BspHI TCATGA 1 cut(s) 798
BspPI GGATC 1 cut(s) 234
BspQI GCTCTTC 1 cut(s) 80
BspT104I TTCGAA 1 cut(s) 594
BsrFI RCCGGY 1 cut(s) 261
BsrI ACTGG 1 cut(s) 870
BssAI RCCGGY 1 cut(s) 261
BssECI CCNNGG 3 cut(s) 480, 490, 736
BssMI GATC 4 cut(s) 226, 637, 981, 1084
BssNI GRCGYC 1 cut(s) 7
BssT1I CCWWGG 2 cut(s) 480, 490
Bst2UI CCWGG 1 cut(s) 291
Bst6I CTCTTC 3 cut(s) 80, 191, 216
BstACI GRCGYC 1 cut(s) 7
BstBI TTCGAA 1 cut(s) 594
BstC8I GCNNGC 1 cut(s) 129
BstDEI CTNAG 4 cut(s) 115, 236, 785, 972
BstDSI CCRYGG 2 cut(s) 480, 736
BstEII GGTNACC 1 cut(s) 51
BstKTI GATC 4 cut(s) 229, 640, 984, 1087
BstMAI GTCTC 1 cut(s) 775
BstMBI GATC 4 cut(s) 226, 637, 981, 1084
BstMWI GCNNNNNNNGC 5 cut(s) 111, 275, 352, 569, 750
BstNI CCWGG 1 cut(s) 291
BstNSI RCATGY 2 cut(s) 131, 748
BstPI GGTNACC 1 cut(s) 51
BstSCI CCNGG 1 cut(s) 289
BstV1I GCAGC 5 cut(s) 92, 290, 855, 863, 1027
BstV2I GAAGAC 1 cut(s) 233
BstX2I RGATCY 3 cut(s) 226, 637, 1084
BstYI RGATCY 3 cut(s) 226, 637, 1084
BsuRI GGCC 3 cut(s) 45, 187, 495
BtgI CCRYGG 2 cut(s) 480, 736
Cac8I GCNNGC 1 cut(s) 129
CciI TCATGA 1 cut(s) 798
Cfr10I RCCGGY 1 cut(s) 261
Cfr13I GGNCC 1 cut(s) 494
CseI GACGC 1 cut(s) 15
CspAI ACCGGT 1 cut(s) 261
CviAII CATG 8 cut(s) 128, 330, 481, 745, 799, 912, 953, 1031
DdeI CTNAG 4 cut(s) 115, 236, 785, 972
DpnI GATC 4 cut(s) 228, 639, 983, 1086
DpnII GATC 4 cut(s) 226, 637, 981, 1084
Eam1104I CTCTTC 3 cut(s) 80, 191, 216
EarI CTCTTC 3 cut(s) 80, 191, 216
Ecl136II GAGCTC 1 cut(s) 114
Eco130I CCWWGG 2 cut(s) 480, 490
Eco147I AGGCCT 2 cut(s) 45, 187
Eco24I GRGCYC 2 cut(s) 116, 271
Eco53kI GAGCTC 1 cut(s) 114
Eco57I CTGAAG 1 cut(s) 411
Eco88I CYCGRG 1 cut(s) 820
Eco91I GGTNACC 1 cut(s) 51
EcoICRI GAGCTC 1 cut(s) 114
EcoO65I GGTNACC 1 cut(s) 51
EcoRI GAATTC 1 cut(s) 325
EcoRII CCWGG 1 cut(s) 289
EcoT14I CCWWGG 2 cut(s) 480, 490
EcoT38I GRGCYC 2 cut(s) 116, 271
ErhI CCWWGG 2 cut(s) 480, 490
FaeI CATG 8 cut(s) 131, 333, 484, 748, 802, 915, 956, 1034
FalI AAGNNNNNCTT 2 cut(s) 1002, 1034
FaqI GGGAC 2 cut(s) 18, 104
FatI CATG 8 cut(s) 127, 329, 480, 744, 798, 911, 952, 1030
FauNDI CATATG 1 cut(s) 864
FbaI TGATCA 1 cut(s) 981
Fnu4HI GCNGC 6 cut(s) 106, 279, 844, 852, 903, 1016
FriOI GRGCYC 2 cut(s) 116, 271
Fsp4HI GCNGC 6 cut(s) 106, 279, 844, 852, 903, 1016
FspBI CTAG 3 cut(s) 254, 932, 993
GluI GCNGC 6 cut(s) 106, 279, 844, 852, 903, 1016
GsuI CTGGAG 1 cut(s) 130
HaeIII GGCC 3 cut(s) 45, 187, 495
HapII CCGG 4 cut(s) 56, 262, 606, 750
HgaI GACGC 1 cut(s) 15
Hin1I GRCGYC 1 cut(s) 7
Hin1II CATG 8 cut(s) 131, 333, 484, 748, 802, 915, 956, 1034
HincII GTYRAC 1 cut(s) 1068
HindII GTYRAC 1 cut(s) 1068
HinfI GANTC 8 cut(s) 440, 515, 543, 578, 614, 683, 783, 935
HpaI GTTAAC 1 cut(s) 1068
HpaII CCGG 4 cut(s) 56, 262, 606, 750
HphI GGTGA 3 cut(s) 45, 1019, 1106
Hpy166II GTNNAC 2 cut(s) 705, 1068
Hpy188I TCNGA 6 cut(s) 430, 637, 733, 766, 973, 1081
Hpy188III TCNNGA 5 cut(s) 245, 567, 780, 799, 1114
Hpy8I GTNNAC 2 cut(s) 705, 1068
Hpy99I CGWCG 1 cut(s) 1075
HpyCH4IV ACGT 2 cut(s) 837, 1070
HpyCH4V TGCA 4 cut(s) 139, 159, 278, 851
HpyF10VI GCNNNNNNNGC 5 cut(s) 111, 275, 352, 569, 750
HpyF3I CTNAG 4 cut(s) 115, 236, 785, 972
HpySE526I ACGT 2 cut(s) 837, 1070
Hsp92I GRCGYC 1 cut(s) 7
Hsp92II CATG 8 cut(s) 131, 333, 484, 748, 802, 915, 956, 1034
Ksp22I TGATCA 1 cut(s) 981
KspAI GTTAAC 1 cut(s) 1068
Kzo9I GATC 4 cut(s) 226, 637, 981, 1084
LguI GCTCTTC 1 cut(s) 80
LmnI GCTCC 1 cut(s) 111
Lsp1109I GCAGC 5 cut(s) 92, 290, 855, 863, 1027
MaeI CTAG 3 cut(s) 254, 932, 993
MaeII ACGT 2 cut(s) 837, 1070
MaeIII GTNAC 2 cut(s) 51, 872
MalI GATC 4 cut(s) 228, 639, 983, 1086
MboI GATC 4 cut(s) 226, 637, 981, 1084
MfeI CAATTG 1 cut(s) 284
MflI RGATCY 3 cut(s) 226, 637, 1084
MhlI GDGCHC 2 cut(s) 116, 271
MlyI GAGTC 6 cut(s) 449, 552, 623, 692, 777, 929
MmeI TCCRAC 1 cut(s) 488
MroXI GAANNNNTTC 1 cut(s) 74
MseI TTAA 3 cut(s) 35, 810, 1067
MslI CAYNNNNRTG 1 cut(s) 957
MspI CCGG 4 cut(s) 56, 262, 606, 750
MspR9I CCNGG 1 cut(s) 291
MunI CAATTG 1 cut(s) 284
MvaI CCWGG 1 cut(s) 291
MwoI GCNNNNNNNGC 5 cut(s) 111, 275, 352, 569, 750
NcoI CCATGG 1 cut(s) 480
NdeI CATATG 1 cut(s) 864
NdeII GATC 4 cut(s) 226, 637, 981, 1084
NlaIII CATG 8 cut(s) 131, 333, 484, 748, 802, 915, 956, 1034
NmuCI GTSAC 1 cut(s) 51
NspI RCATGY 2 cut(s) 131, 748
NspV TTCGAA 1 cut(s) 594
PaeI GCATGC 1 cut(s) 131
PaeR7I CTCGAG 1 cut(s) 820
PagI TCATGA 1 cut(s) 798
PceI AGGCCT 2 cut(s) 45, 187
PciSI GCTCTTC 1 cut(s) 80
PdmI GAANNNNTTC 1 cut(s) 74
PfeI GAWTC 2 cut(s) 515, 578
PinAI ACCGGT 1 cut(s) 261
PkrI GCNGC 6 cut(s) 107, 280, 845, 853, 904, 1017
PleI GAGTC 6 cut(s) 448, 551, 622, 691, 777, 929
PpsI GAGTC 6 cut(s) 448, 551, 622, 691, 777, 929
Psp124BI GAGCTC 1 cut(s) 116
Psp6I CCWGG 1 cut(s) 289
PspEI GGTNACC 1 cut(s) 51
PspGI CCWGG 1 cut(s) 289
PspPI GGNCC 1 cut(s) 494
PspXI VCTCGAGB 1 cut(s) 820
PsuI RGATCY 3 cut(s) 226, 637, 1084
RseI CAYNNNNRTG 1 cut(s) 957
SacI GAGCTC 1 cut(s) 116
SapI GCTCTTC 1 cut(s) 80
SaqAI TTAA 3 cut(s) 35, 810, 1067
SatI GCNGC 6 cut(s) 106, 279, 844, 852, 903, 1016
Sau3AI GATC 4 cut(s) 226, 637, 981, 1084
Sau96I GGNCC 1 cut(s) 494
SchI GAGTC 6 cut(s) 449, 552, 623, 692, 777, 929
ScrFI CCNGG 1 cut(s) 291
SduI GDGCHC 2 cut(s) 116, 271
Sfr274I CTCGAG 1 cut(s) 820
SfuI TTCGAA 1 cut(s) 594
SlaI CTCGAG 1 cut(s) 820
SmiMI CAYNNNNRTG 1 cut(s) 957
SmlI CTYRAG 2 cut(s) 565, 820
SmoI CTYRAG 2 cut(s) 565, 820
SpeI ACTAGT 1 cut(s) 992
SphI GCATGC 1 cut(s) 131
SseBI AGGCCT 2 cut(s) 45, 187
SsiI CCGC 1 cut(s) 902
SspI AATATT 1 cut(s) 1120
SspMI CTAG 3 cut(s) 254, 932, 993
SstI GAGCTC 1 cut(s) 116
StuI AGGCCT 2 cut(s) 45, 187
StyD4I CCNGG 1 cut(s) 289
StyI CCWWGG 2 cut(s) 480, 490
TaiI ACGT 2 cut(s) 840, 1073
TaqI TCGA 7 cut(s) 91, 594, 612, 779, 821, 833, 894
TauI GCSGC 1 cut(s) 905
TfiI GAWTC 2 cut(s) 515, 578
Tru1I TTAA 3 cut(s) 35, 810, 1067
Tru9I TTAA 3 cut(s) 35, 810, 1067
TseFI GTSAC 1 cut(s) 51
TseI GCWGC 5 cut(s) 105, 278, 843, 851, 1015
Tsp45I GTSAC 1 cut(s) 51
TspDTI ATGAA 6 cut(s) 318, 365, 787, 815, 900, 941
TspGWI ACGGA 2 cut(s) 753, 1053
XapI RAATTY 5 cut(s) 325, 694, 727, 1039, 1099
XceI RCATGY 2 cut(s) 131, 748
XhoI CTCGAG 1 cut(s) 820
XmnI GAANNNNTTC 1 cut(s) 74
XspI CTAG 3 cut(s) 254, 932, 993
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.