Rroxscaffold_3G00262690
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0011469
Physical Location & Seq
Forward (+)
56695860 .. 56697603
1744 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00262690.1

Sequence Viewer

Length: 1119 bp
ATGGGACGCCATTCGTGTTGTTTGAAGCAAAAGTTAAGGAAAGGTCTCTGGTCACCGGAAGAAGACGAGAAGCTCTTCAATTACATCACTAGATTTGGCGTCGGTTGCTGGAGCTCTGTCCCCAAGCTTGCAGGGTTGCAAAGATGTGGTAAGAGTTGCAGGTTGAGATGGATAAACTACTTGAGGCCTGATTTAAAGAGAGGAATGTTCTCTCAGCAAGAAGAGGACCTCATTATTAGTCTCCATGAAGTTCTTGGGAACAGGTGGGCTCAAATTGCAGCACAATTGCCAGGAAGAACAGATAATGAGATAAAGAACTTCTGGAATTCGTGTTTGAAGAAGAAGCTAATGAAGCAAGGGATTGACCCGACCACTCACAAGCCACTAACAGATGAAGAACTACTCAAAGACGATAAGACGAATATAGTCAAGTGCTCAGAATTGAATAACGAGTCTTCATCCTTGCCACTAGTGCCAGCTCATGAGCATCACCACGAACTTCCCATGGCTAATTCATCACAAGGTCCAACATTTCTCGTCAACGATTCGAGTTATTTTGATGGTACTAGTACCGGAATAAGTACTACACAAACTTCCAGAGCTGCAGCTGCCTTCGACTCTCTATCCTATTTCGAGTTCCAAACTAGTATCGATCCATCCGGGTACAATTCTGACCTCGTTACTAGTACTCAATATCATCCGCCTACTACAAATTCCATTAGACCCTCTTTCAATTATGAAGCAATTATCGGATACAATTCTATGCCAAGTTTGGCGAATTCGGACCATGGAAGCATGTCCGGCACAGACTTCTCCTTTAGTTCAAGCAATAGCTCAACTGCAGGTTTCCATATGAACCACAACAACAATGTAGTGGAAAATAATGCAGGTACTTTTTCTTGGGATATAAACACAGAGAACAAATTAGAGTCCTTGTTTCATCAATTTGATGGCCCGAAATCAGAGGAACTGGTCATGATGAAGCCCAATTCATCATCATGGGAAGAAGGGCAGCTTCATCATCAACATCAGAATTCAGTAGATTTCAGTAGCTATCCATTAACGTCGCTATCAGAAGATCTAACAGGTGCAAACTTTGATGTCTTCCAGCATATTTGA

Protein Analysis

372

Amino Acids

41.79

Weight (kDa)

5.71

Isoelectric Point (pI)

47.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 1.2e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 76 1.4e-11 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 112 1.1e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 70 - 120 1.5e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01680 AT4G01680 AT4G01680
fragaria_vesca FvH4_5g06070
malus_domestica MD06G1167200.v1.1 MD14G1172900.v1.1
prunus_persica Prupe.5G167100_v2.0.a1 Prupe.5G167100_v2.0.a1 Prupe.5G167100_v2.0.a1
pyrus_communis pycom06g14990 pycom14g14420
rosa_chinensis RchiOBHm_Chr7g0192781
rosa_laevigata RLG00000004329
rosa_multiflora Rmu_sc0002040.1_g000020
rosa_roxburghii Rroxscaffold_3G00262690
rosa_rugosa Rorug07G0004600
rosa_samantha Rh7AG129700 Rh7BG131000 Rh7DG131900
rosa_wichuraiana Rw7G011100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 150, 833, 878
AciI CCGC 1 cut(s) 701
AclWI GGATC 1 cut(s) 647
AcsI RAATTY 4 cut(s) 325, 712, 778, 1033
AcyI GRCGYC 2 cut(s) 7, 99
AfaI GTAC 6 cut(s) 565, 571, 583, 665, 688, 892
AgsI TTSAA 6 cut(s) 25, 79, 337, 445, 733, 825
AhlI ACTAGT 4 cut(s) 469, 566, 644, 683
AjnI CCWGG 1 cut(s) 289
Alw21I GWGCWC 2 cut(s) 116, 437
Alw26I GTCTC 2 cut(s) 50, 245
AlwI GGATC 1 cut(s) 647
AoxI GGCC 2 cut(s) 185, 952
ApeKI GCWGC 5 cut(s) 278, 602, 605, 608, 1012
ApoI RAATTY 4 cut(s) 325, 712, 778, 1033
Asp700I GAANNNNTTC 1 cut(s) 74
AspS9I GGNCC 4 cut(s) 226, 524, 784, 953
AsuC2I CCSGG 1 cut(s) 661
AsuHPI GGTGA 2 cut(s) 45, 482
AvaII GGWCC 3 cut(s) 226, 524, 784
BanII GRGCYC 2 cut(s) 116, 271
BbsI GAAGAC 3 cut(s) 69, 447, 1096
Bbv12I GWGCWC 2 cut(s) 116, 437
BbvI GCAGC 5 cut(s) 290, 589, 595, 617, 1024
BccI CCATC 4 cut(s) 162, 554, 664, 944
BciT130I CCWGG 1 cut(s) 291
BciVI GTATCC 1 cut(s) 746
BcnI CCSGG 1 cut(s) 661
BcoDI GTCTC 2 cut(s) 50, 245
BcuI ACTAGT 4 cut(s) 469, 566, 644, 683
BfaI CTAG 5 cut(s) 90, 470, 567, 645, 684
BfmI CTRYAG 2 cut(s) 603, 840
BfuAI ACCTGC 3 cut(s) 150, 833, 878
BfuI GTATCC 1 cut(s) 746
BglII AGATCT 1 cut(s) 1078
BisI GCNGC 5 cut(s) 279, 603, 606, 609, 1013
BlsI GCNGC 5 cut(s) 280, 604, 607, 610, 1014
BmcAI AGTACT 2 cut(s) 583, 688
Bme1390I CCNGG 2 cut(s) 291, 661
Bme18I GGWCC 3 cut(s) 226, 524, 784
BmgT120I GGNCC 4 cut(s) 226, 524, 784, 953
BmrFI CCNGG 2 cut(s) 291, 661
BmsI GCATC 1 cut(s) 496
BpiI GAAGAC 3 cut(s) 69, 447, 1096
BpmI CTGGAG 1 cut(s) 130
BpuEI CTTGAG 1 cut(s) 202
BpuMI CCSGG 1 cut(s) 661
Bsa29I ATCGAT 1 cut(s) 651
BsaHI GRCGYC 2 cut(s) 7, 99
BsaI GGTCTC 1 cut(s) 50
BsaJI CCNNGG 2 cut(s) 504, 787
BsaWI WCCGGW 2 cut(s) 55, 572
Bse1I ACTGG 1 cut(s) 975
BseBI CCWGG 1 cut(s) 291
BseCI ATCGAT 1 cut(s) 651
BseDI CCNNGG 2 cut(s) 504, 787
BseGI GGATG 3 cut(s) 458, 656, 697
BseMII CTCAG 2 cut(s) 227, 450
BseNI ACTGG 1 cut(s) 975
BseXI GCAGC 5 cut(s) 290, 589, 595, 617, 1024
BshFI GGCC 2 cut(s) 187, 954
BshVI ATCGAT 1 cut(s) 651
BsiHKAI GWGCWC 2 cut(s) 116, 437
BsiSI CCGG 4 cut(s) 56, 573, 660, 801
BslFI GGGAC 2 cut(s) 18, 104
BsmAI GTCTC 2 cut(s) 50, 245
BsmFI GGGAC 2 cut(s) 18, 104
BsnI GGCC 2 cut(s) 187, 954
Bso31I GGTCTC 1 cut(s) 50
Bsp1286I GDGCHC 3 cut(s) 116, 271, 437
Bsp143I GATC 2 cut(s) 652, 1078
Bsp19I CCATGG 2 cut(s) 504, 787
BspACI CCGC 1 cut(s) 701
BspANI GGCC 2 cut(s) 187, 954
BspCNI CTCAG 2 cut(s) 226, 449
BspDI ATCGAT 1 cut(s) 651
BspHI TCATGA 2 cut(s) 481, 975
BspMAI CTGCAG 2 cut(s) 607, 844
BspMI ACCTGC 3 cut(s) 150, 833, 878
BspPI GGATC 1 cut(s) 647
BspQI GCTCTTC 1 cut(s) 80
BspTNI GGTCTC 1 cut(s) 50
BsrI ACTGG 1 cut(s) 975
BssECI CCNNGG 2 cut(s) 504, 787
BssMI GATC 2 cut(s) 652, 1078
BssNI GRCGYC 2 cut(s) 7, 99
BssT1I CCWWGG 2 cut(s) 504, 787
Bst2UI CCWGG 1 cut(s) 291
Bst6I CTCTTC 2 cut(s) 80, 216
BstACI GRCGYC 2 cut(s) 7, 99
BstC8I GCNNGC 2 cut(s) 129, 477
BstDEI CTNAG 2 cut(s) 213, 436
BstDSI CCRYGG 2 cut(s) 504, 787
BstEII GGTNACC 1 cut(s) 51
BstF5I GGATG 3 cut(s) 458, 656, 697
BstKTI GATC 2 cut(s) 655, 1081
BstMAI GTCTC 2 cut(s) 50, 245
BstMBI GATC 2 cut(s) 652, 1078
BstMWI GCNNNNNNNGC 6 cut(s) 105, 275, 352, 472, 608, 801
BstNI CCWGG 1 cut(s) 291
BstNSI RCATGY 1 cut(s) 799
BstPI GGTNACC 1 cut(s) 51
BstSCI CCNGG 2 cut(s) 289, 659
BstSFI CTRYAG 2 cut(s) 603, 840
BstV1I GCAGC 5 cut(s) 290, 589, 595, 617, 1024
BstV2I GAAGAC 3 cut(s) 69, 447, 1096
BstX2I RGATCY 1 cut(s) 1078
BstYI RGATCY 1 cut(s) 1078
Bsu15I ATCGAT 1 cut(s) 651
BsuI GTATCC 1 cut(s) 746
BsuRI GGCC 2 cut(s) 187, 954
BsuTUI ATCGAT 1 cut(s) 651
BtgI CCRYGG 2 cut(s) 504, 787
BtsCI GGATG 3 cut(s) 458, 656, 697
BveI ACCTGC 3 cut(s) 150, 833, 878
Cac8I GCNNGC 2 cut(s) 129, 477
CciI TCATGA 2 cut(s) 481, 975
Cfr13I GGNCC 4 cut(s) 226, 524, 784, 953
ClaI ATCGAT 1 cut(s) 651
CseI GACGC 2 cut(s) 15, 88
Csp6I GTAC 6 cut(s) 564, 570, 582, 664, 687, 891
CviAII CATG 7 cut(s) 245, 482, 505, 788, 796, 976, 999
CviQI GTAC 6 cut(s) 564, 570, 582, 664, 687, 891
DdeI CTNAG 2 cut(s) 213, 436
DpnI GATC 2 cut(s) 654, 1080
DpnII GATC 2 cut(s) 652, 1078
DraI TTTAAA 1 cut(s) 195
Eam1104I CTCTTC 2 cut(s) 80, 216
EarI CTCTTC 2 cut(s) 80, 216
EciI GGCGGA 1 cut(s) 690
Ecl136II GAGCTC 1 cut(s) 114
Eco130I CCWWGG 2 cut(s) 504, 787
Eco147I AGGCCT 1 cut(s) 187
Eco24I GRGCYC 2 cut(s) 116, 271
Eco31I GGTCTC 1 cut(s) 50
Eco47I GGWCC 3 cut(s) 226, 524, 784
Eco53kI GAGCTC 1 cut(s) 114
Eco91I GGTNACC 1 cut(s) 51
EcoICRI GAGCTC 1 cut(s) 114
EcoO109I RGGNCCY 1 cut(s) 226
EcoO65I GGTNACC 1 cut(s) 51
EcoRI GAATTC 3 cut(s) 325, 778, 1033
EcoRII CCWGG 1 cut(s) 289
EcoT14I CCWWGG 2 cut(s) 504, 787
EcoT38I GRGCYC 2 cut(s) 116, 271
ErhI CCWWGG 2 cut(s) 504, 787
FaeI CATG 7 cut(s) 248, 485, 508, 791, 799, 979, 1002
FalI AAGNNNNNCTT 2 cut(s) 999, 1031
FaqI GGGAC 2 cut(s) 18, 104
FatI CATG 7 cut(s) 244, 481, 504, 787, 795, 975, 998
FauNDI CATATG 1 cut(s) 852
Fnu4HI GCNGC 5 cut(s) 279, 603, 606, 609, 1013
FokI GGATG 3 cut(s) 445, 643, 684
FriOI GRGCYC 2 cut(s) 116, 271
Fsp4HI GCNGC 5 cut(s) 279, 603, 606, 609, 1013
FspBI CTAG 5 cut(s) 90, 470, 567, 645, 684
GluI GCNGC 5 cut(s) 279, 603, 606, 609, 1013
GsuI CTGGAG 1 cut(s) 130
HaeIII GGCC 2 cut(s) 187, 954
HapII CCGG 4 cut(s) 56, 573, 660, 801
HgaI GACGC 2 cut(s) 15, 88
Hin1I GRCGYC 2 cut(s) 7, 99
Hin1II CATG 7 cut(s) 248, 485, 508, 791, 799, 979, 1002
HincII GTYRAC 1 cut(s) 541
HindII GTYRAC 1 cut(s) 541
HindIII AAGCTT 1 cut(s) 125
HinfI GANTC 4 cut(s) 452, 545, 617, 929
HpaII CCGG 4 cut(s) 56, 573, 660, 801
HphI GGTGA 2 cut(s) 45, 482
Hpy166II GTNNAC 1 cut(s) 541
Hpy188I TCNGA 7 cut(s) 439, 673, 752, 784, 964, 1032, 1075
Hpy188III TCNNGA 4 cut(s) 322, 482, 597, 976
Hpy8I GTNNAC 1 cut(s) 541
Hpy99I CGWCG 2 cut(s) 104, 1069
HpyAV CCTTC 2 cut(s) 622, 1001
HpyCH4IV ACGT 1 cut(s) 1064
HpyCH4V TGCA 8 cut(s) 131, 139, 159, 278, 605, 842, 887, 1091
HpyF10VI GCNNNNNNNGC 6 cut(s) 105, 275, 352, 472, 608, 801
HpyF3I CTNAG 2 cut(s) 213, 436
HpySE526I ACGT 1 cut(s) 1064
Hsp92I GRCGYC 2 cut(s) 7, 99
Hsp92II CATG 7 cut(s) 248, 485, 508, 791, 799, 979, 1002
Kzo9I GATC 2 cut(s) 652, 1078
LguI GCTCTTC 1 cut(s) 80
LmnI GCTCC 1 cut(s) 111
Lsp1109I GCAGC 5 cut(s) 290, 589, 595, 617, 1024
LweI GCATC 1 cut(s) 496
MaeI CTAG 5 cut(s) 90, 470, 567, 645, 684
MaeII ACGT 1 cut(s) 1064
MaeIII GTNAC 2 cut(s) 51, 679
MalI GATC 2 cut(s) 654, 1080
MboI GATC 2 cut(s) 652, 1078
MfeI CAATTG 1 cut(s) 284
MflI RGATCY 1 cut(s) 1078
MhlI GDGCHC 3 cut(s) 116, 271, 437
MlyI GAGTC 3 cut(s) 461, 611, 938
MmeI TCCRAC 1 cut(s) 551
MnlI CCTC 7 cut(s) 177, 194, 217, 239, 686, 736, 958
MroXI GAANNNNTTC 1 cut(s) 74
MseI TTAA 3 cut(s) 35, 194, 1061
MslI CAYNNNNRTG 1 cut(s) 997
MspA1I CMGCKG 1 cut(s) 608
MspI CCGG 4 cut(s) 56, 573, 660, 801
MspR9I CCNGG 2 cut(s) 291, 661
MunI CAATTG 1 cut(s) 284
MvaI CCWGG 1 cut(s) 291
MwoI GCNNNNNNNGC 6 cut(s) 105, 275, 352, 472, 608, 801
NciI CCSGG 1 cut(s) 661
NcoI CCATGG 2 cut(s) 504, 787
NdeI CATATG 1 cut(s) 852
NdeII GATC 2 cut(s) 652, 1078
NlaIII CATG 7 cut(s) 248, 485, 508, 791, 799, 979, 1002
NmuCI GTSAC 1 cut(s) 51
NspI RCATGY 1 cut(s) 799
PagI TCATGA 2 cut(s) 481, 975
PceI AGGCCT 1 cut(s) 187
PciSI GCTCTTC 1 cut(s) 80
PdmI GAANNNNTTC 1 cut(s) 74
PfeI GAWTC 1 cut(s) 545
PkrI GCNGC 5 cut(s) 280, 604, 607, 610, 1014
PleI GAGTC 3 cut(s) 460, 611, 937
PpsI GAGTC 3 cut(s) 460, 611, 937
PpuMI RGGWCCY 1 cut(s) 226
Psp124BI GAGCTC 1 cut(s) 116
Psp5II RGGWCCY 1 cut(s) 226
Psp6I CCWGG 1 cut(s) 289
PspEI GGTNACC 1 cut(s) 51
PspGI CCWGG 1 cut(s) 289
PspPI GGNCC 4 cut(s) 226, 524, 784, 953
PspPPI RGGWCCY 1 cut(s) 226
PstI CTGCAG 2 cut(s) 607, 844
PsuI RGATCY 1 cut(s) 1078
PvuII CAGCTG 1 cut(s) 608
RsaI GTAC 6 cut(s) 565, 571, 583, 665, 688, 892
RsaNI GTAC 6 cut(s) 564, 570, 582, 664, 687, 891
RseI CAYNNNNRTG 1 cut(s) 997
SacI GAGCTC 1 cut(s) 116
SapI GCTCTTC 1 cut(s) 80
SaqAI TTAA 3 cut(s) 35, 194, 1061
SatI GCNGC 5 cut(s) 279, 603, 606, 609, 1013
Sau3AI GATC 2 cut(s) 652, 1078
Sau96I GGNCC 4 cut(s) 226, 524, 784, 953
ScaI AGTACT 2 cut(s) 583, 688
SchI GAGTC 3 cut(s) 461, 611, 938
ScrFI CCNGG 2 cut(s) 291, 661
SduI GDGCHC 3 cut(s) 116, 271, 437
SfaNI GCATC 1 cut(s) 496
SfcI CTRYAG 2 cut(s) 603, 840
SinI GGWCC 3 cut(s) 226, 524, 784
SmiMI CAYNNNNRTG 1 cut(s) 997
SmlI CTYRAG 1 cut(s) 181
SmoI CTYRAG 1 cut(s) 181
SpeI ACTAGT 4 cut(s) 469, 566, 644, 683
SseBI AGGCCT 1 cut(s) 187
SsiI CCGC 1 cut(s) 701
SspMI CTAG 5 cut(s) 90, 470, 567, 645, 684
SstI GAGCTC 1 cut(s) 116
StuI AGGCCT 1 cut(s) 187
StyD4I CCNGG 2 cut(s) 289, 659
StyI CCWWGG 2 cut(s) 504, 787
TaiI ACGT 1 cut(s) 1067
TaqI TCGA 4 cut(s) 548, 615, 633, 651
TatI WGTACW 2 cut(s) 581, 686
TfiI GAWTC 1 cut(s) 545
Tru1I TTAA 3 cut(s) 35, 194, 1061
Tru9I TTAA 3 cut(s) 35, 194, 1061
TseFI GTSAC 1 cut(s) 51
TseI GCWGC 5 cut(s) 278, 602, 605, 608, 1012
Tsp45I GTSAC 1 cut(s) 51
VpaK11BI GGWCC 3 cut(s) 226, 524, 784
XapI RAATTY 4 cut(s) 325, 712, 778, 1033
XceI RCATGY 1 cut(s) 799
XcmI CCANNNNNNNNNTGG 1 cut(s) 251
XmnI GAANNNNTTC 1 cut(s) 74
XspI CTAG 5 cut(s) 90, 470, 567, 645, 684
ZrmI AGTACT 2 cut(s) 583, 688
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.