Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002040.1

Orthogroup ID

OG0011469

Physical Location & Seq

Genomic Coordinates Reverse (-)

78361 .. 79695

Gene Structure 1335 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002040.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

atgggacgccattcgtgttgtttgaagcaaaagttaaggaaaggtctctggtcaccggaagaagacgagaagctcttcaattacatcactagatttggcgtcggttgctggagctctgtccccaagcttgcagggttgcaaagatgtggtaagagttgcaggttgagatggataaactacttgaggcctgatttaaagagaggaatgttctctcagcaagaagaggacctcattattagtctccatgaagttcttgggaacaggtgggctcaaattgcagcacaattgccaggaagaacagataatgagataaagaacttctggaattcgtgtttgaagaagaagctaatgaagcaagggattgacccgaccactcacaagccactaacagatgaagaactactcaaagacgataagacgaatatagtcaagtgctcagaattgaataacgagtcttcatccttgccactagtgccagctcatgagcatcaccacgaacttcccatggctaattcatcacaaggtccaacatttctcgtcaacgattcgagttattttgatggtactagtaccggaataagtactacacaaacttccagagctgcagctgccttcgactctctatcctatttcgagttccaaactagtatcgatccatccgggtacaattctgacctcgttactagtactcaatatcatccgcctactacaaattccattagaccctctttcaattatgaagcaattatcggatacaattctatgccaagtttggcgaattcggaccatggaagcatgtccggcacagacttctcctttagttcaagcaatagctcaactgccggtttccatatgaaccacaacaacaatgtagtggaaaataatgcaggtactttttcttgggatataaacacagagaacaaattagagtccttgtttcatcaatttgatggcccgaaatcagaggaactagtcatgatgaagcccaattcatcatcatgggaagaagggcagcttcatcatcaacatcagaattcagtagatttcagtagctatccgttaacgtcgctatcagaagatctaacaggtgcaaactttgatgtcttccagcatatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

372

Amino Acids

41.79

Weight (kDa)

5.71

Isoelectric Point (pI)

47.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011469)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01680 AT4G01680 AT4G01680
fragaria_vesca	FvH4_5g06070
malus_domestica	MD06G1167200.v1.1 MD14G1172900.v1.1
prunus_persica	Prupe.5G167100_v2.0.a1 Prupe.5G167100_v2.0.a1 Prupe.5G167100_v2.0.a1
pyrus_communis	pycom06g14990 pycom14g14420
rosa_chinensis	RchiOBHm_Chr7g0192781
rosa_laevigata	RLG00000004329
rosa_multiflora	Rmu_sc0002040.1_g000020
rosa_roxburghii	Rroxscaffold_3G00262690
rosa_rugosa	Rorug07G0004600
rosa_samantha	Rh7AG129700 Rh7BG131000 Rh7DG131900
rosa_wichuraiana	Rw7G011100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	150, 878
AciI	CCGC	1 cut(s)	701
AclWI	GGATC	1 cut(s)	647
AcsI	RAATTY	4 cut(s)	325, 712, 778, 1033
AcyI	GRCGYC	2 cut(s)	7, 99
AfaI	GTAC	6 cut(s)	565, 571, 583, 665, 688, 892
AgsI	TTSAA	6 cut(s)	25, 79, 337, 445, 733, 825
AhlI	ACTAGT	5 cut(s)	469, 566, 644, 683, 970
AjnI	CCWGG	1 cut(s)	289
Alw21I	GWGCWC	2 cut(s)	116, 437
Alw26I	GTCTC	2 cut(s)	50, 245
AlwI	GGATC	1 cut(s)	647
AoxI	GGCC	2 cut(s)	185, 952
ApeKI	GCWGC	5 cut(s)	278, 602, 605, 608, 1012
ApoI	RAATTY	4 cut(s)	325, 712, 778, 1033
Asp700I	GAANNNNTTC	1 cut(s)	74
AspS9I	GGNCC	4 cut(s)	226, 524, 784, 953
AsuC2I	CCSGG	1 cut(s)	661
AsuHPI	GGTGA	2 cut(s)	45, 482
AvaII	GGWCC	3 cut(s)	226, 524, 784
BanII	GRGCYC	2 cut(s)	116, 271
BbsI	GAAGAC	3 cut(s)	69, 447, 1096
Bbv12I	GWGCWC	2 cut(s)	116, 437
BbvI	GCAGC	5 cut(s)	290, 589, 595, 617, 1024
BccI	CCATC	4 cut(s)	162, 554, 664, 944
BciT130I	CCWGG	1 cut(s)	291
BciVI	GTATCC	1 cut(s)	746
BcnI	CCSGG	1 cut(s)	661
BcoDI	GTCTC	2 cut(s)	50, 245
BcuI	ACTAGT	5 cut(s)	469, 566, 644, 683, 970
BfaI	CTAG	6 cut(s)	90, 470, 567, 645, 684, 971
BfmI	CTRYAG	1 cut(s)	603
BfuAI	ACCTGC	2 cut(s)	150, 878
BfuI	GTATCC	1 cut(s)	746
BglII	AGATCT	1 cut(s)	1078
BisI	GCNGC	5 cut(s)	279, 603, 606, 609, 1013
BlsI	GCNGC	5 cut(s)	280, 604, 607, 610, 1014
BmcAI	AGTACT	2 cut(s)	583, 688
Bme1390I	CCNGG	2 cut(s)	291, 661
Bme18I	GGWCC	3 cut(s)	226, 524, 784
BmgT120I	GGNCC	4 cut(s)	226, 524, 784, 953
BmrFI	CCNGG	2 cut(s)	291, 661
BmsI	GCATC	1 cut(s)	496
BpiI	GAAGAC	3 cut(s)	69, 447, 1096
BpmI	CTGGAG	1 cut(s)	130
BpuEI	CTTGAG	1 cut(s)	202
BpuMI	CCSGG	1 cut(s)	661
Bsa29I	ATCGAT	1 cut(s)	651
BsaHI	GRCGYC	2 cut(s)	7, 99
BsaI	GGTCTC	1 cut(s)	50
BsaJI	CCNNGG	2 cut(s)	504, 787
BsaWI	WCCGGW	2 cut(s)	55, 572
Bse118I	RCCGGY	1 cut(s)	842
BseBI	CCWGG	1 cut(s)	291
BseCI	ATCGAT	1 cut(s)	651
BseDI	CCNNGG	2 cut(s)	504, 787
BseGI	GGATG	3 cut(s)	458, 656, 697
BseMII	CTCAG	2 cut(s)	227, 450
BseXI	GCAGC	5 cut(s)	290, 589, 595, 617, 1024
BshFI	GGCC	2 cut(s)	187, 954
BshVI	ATCGAT	1 cut(s)	651
BsiHKAI	GWGCWC	2 cut(s)	116, 437
BsiSI	CCGG	5 cut(s)	56, 573, 660, 801, 843
BslFI	GGGAC	2 cut(s)	18, 104
BsmAI	GTCTC	2 cut(s)	50, 245
BsmFI	GGGAC	2 cut(s)	18, 104
BsnI	GGCC	2 cut(s)	187, 954
Bso31I	GGTCTC	1 cut(s)	50
Bsp1286I	GDGCHC	3 cut(s)	116, 271, 437
Bsp143I	GATC	2 cut(s)	652, 1078
Bsp19I	CCATGG	2 cut(s)	504, 787
BspACI	CCGC	1 cut(s)	701
BspANI	GGCC	2 cut(s)	187, 954
BspCNI	CTCAG	2 cut(s)	226, 449
BspDI	ATCGAT	1 cut(s)	651
BspHI	TCATGA	2 cut(s)	481, 975
BspMAI	CTGCAG	1 cut(s)	607
BspMI	ACCTGC	2 cut(s)	150, 878
BspPI	GGATC	1 cut(s)	647
BspQI	GCTCTTC	1 cut(s)	80
BspTNI	GGTCTC	1 cut(s)	50
BsrFI	RCCGGY	1 cut(s)	842
BssAI	RCCGGY	1 cut(s)	842
BssECI	CCNNGG	2 cut(s)	504, 787
BssMI	GATC	2 cut(s)	652, 1078
BssNI	GRCGYC	2 cut(s)	7, 99
BssT1I	CCWWGG	2 cut(s)	504, 787
Bst2UI	CCWGG	1 cut(s)	291
Bst6I	CTCTTC	2 cut(s)	80, 216
BstACI	GRCGYC	2 cut(s)	7, 99
BstC8I	GCNNGC	2 cut(s)	129, 477
BstDEI	CTNAG	2 cut(s)	213, 436
BstDSI	CCRYGG	2 cut(s)	504, 787
BstEII	GGTNACC	1 cut(s)	51
BstF5I	GGATG	3 cut(s)	458, 656, 697
BstKTI	GATC	2 cut(s)	655, 1081
BstMAI	GTCTC	2 cut(s)	50, 245
BstMBI	GATC	2 cut(s)	652, 1078
BstMWI	GCNNNNNNNGC	6 cut(s)	105, 275, 352, 472, 608, 801
BstNI	CCWGG	1 cut(s)	291
BstNSI	RCATGY	1 cut(s)	799
BstPI	GGTNACC	1 cut(s)	51
BstSCI	CCNGG	2 cut(s)	289, 659
BstSFI	CTRYAG	1 cut(s)	603
BstV1I	GCAGC	5 cut(s)	290, 589, 595, 617, 1024
BstV2I	GAAGAC	3 cut(s)	69, 447, 1096
BstX2I	RGATCY	1 cut(s)	1078
BstYI	RGATCY	1 cut(s)	1078
Bsu15I	ATCGAT	1 cut(s)	651
BsuI	GTATCC	1 cut(s)	746
BsuRI	GGCC	2 cut(s)	187, 954
BsuTUI	ATCGAT	1 cut(s)	651
BtgI	CCRYGG	2 cut(s)	504, 787
BtsCI	GGATG	3 cut(s)	458, 656, 697
BveI	ACCTGC	2 cut(s)	150, 878
Cac8I	GCNNGC	2 cut(s)	129, 477
CciI	TCATGA	2 cut(s)	481, 975
Cfr10I	RCCGGY	1 cut(s)	842
Cfr13I	GGNCC	4 cut(s)	226, 524, 784, 953
ClaI	ATCGAT	1 cut(s)	651
CseI	GACGC	2 cut(s)	15, 88
Csp6I	GTAC	6 cut(s)	564, 570, 582, 664, 687, 891
CviAII	CATG	7 cut(s)	245, 482, 505, 788, 796, 976, 999
CviQI	GTAC	6 cut(s)	564, 570, 582, 664, 687, 891
DdeI	CTNAG	2 cut(s)	213, 436
DpnI	GATC	2 cut(s)	654, 1080
DpnII	GATC	2 cut(s)	652, 1078
DraI	TTTAAA	1 cut(s)	195
Eam1104I	CTCTTC	2 cut(s)	80, 216
EarI	CTCTTC	2 cut(s)	80, 216
EciI	GGCGGA	1 cut(s)	690
Ecl136II	GAGCTC	1 cut(s)	114
Eco130I	CCWWGG	2 cut(s)	504, 787
Eco147I	AGGCCT	1 cut(s)	187
Eco24I	GRGCYC	2 cut(s)	116, 271
Eco31I	GGTCTC	1 cut(s)	50
Eco47I	GGWCC	3 cut(s)	226, 524, 784
Eco53kI	GAGCTC	1 cut(s)	114
Eco91I	GGTNACC	1 cut(s)	51
EcoICRI	GAGCTC	1 cut(s)	114
EcoO109I	RGGNCCY	1 cut(s)	226
EcoO65I	GGTNACC	1 cut(s)	51
EcoRI	GAATTC	3 cut(s)	325, 778, 1033
EcoRII	CCWGG	1 cut(s)	289
EcoT14I	CCWWGG	2 cut(s)	504, 787
EcoT38I	GRGCYC	2 cut(s)	116, 271
ErhI	CCWWGG	2 cut(s)	504, 787
FaeI	CATG	7 cut(s)	248, 485, 508, 791, 799, 979, 1002
FalI	AAGNNNNNCTT	2 cut(s)	999, 1031
FaqI	GGGAC	2 cut(s)	18, 104
FatI	CATG	7 cut(s)	244, 481, 504, 787, 795, 975, 998
FauNDI	CATATG	1 cut(s)	852
Fnu4HI	GCNGC	5 cut(s)	279, 603, 606, 609, 1013
FokI	GGATG	3 cut(s)	445, 643, 684
FriOI	GRGCYC	2 cut(s)	116, 271
Fsp4HI	GCNGC	5 cut(s)	279, 603, 606, 609, 1013
FspBI	CTAG	6 cut(s)	90, 470, 567, 645, 684, 971
GluI	GCNGC	5 cut(s)	279, 603, 606, 609, 1013
GsuI	CTGGAG	1 cut(s)	130
HaeIII	GGCC	2 cut(s)	187, 954
HapII	CCGG	5 cut(s)	56, 573, 660, 801, 843
HgaI	GACGC	2 cut(s)	15, 88
Hin1I	GRCGYC	2 cut(s)	7, 99
Hin1II	CATG	7 cut(s)	248, 485, 508, 791, 799, 979, 1002
HincII	GTYRAC	2 cut(s)	541, 1062
HindII	GTYRAC	2 cut(s)	541, 1062
HindIII	AAGCTT	1 cut(s)	125
HinfI	GANTC	4 cut(s)	452, 545, 617, 929
HpaI	GTTAAC	1 cut(s)	1062
HpaII	CCGG	5 cut(s)	56, 573, 660, 801, 843
HphI	GGTGA	2 cut(s)	45, 482
Hpy166II	GTNNAC	2 cut(s)	541, 1062
Hpy188I	TCNGA	7 cut(s)	439, 673, 752, 784, 964, 1032, 1075
Hpy188III	TCNNGA	4 cut(s)	322, 482, 597, 976
Hpy8I	GTNNAC	2 cut(s)	541, 1062
Hpy99I	CGWCG	2 cut(s)	104, 1069
HpyAV	CCTTC	2 cut(s)	622, 1001
HpyCH4IV	ACGT	1 cut(s)	1064
HpyCH4V	TGCA	7 cut(s)	131, 139, 159, 278, 605, 887, 1091
HpyF10VI	GCNNNNNNNGC	6 cut(s)	105, 275, 352, 472, 608, 801
HpyF3I	CTNAG	2 cut(s)	213, 436
HpySE526I	ACGT	1 cut(s)	1064
Hsp92I	GRCGYC	2 cut(s)	7, 99
Hsp92II	CATG	7 cut(s)	248, 485, 508, 791, 799, 979, 1002
KspAI	GTTAAC	1 cut(s)	1062
Kzo9I	GATC	2 cut(s)	652, 1078
LguI	GCTCTTC	1 cut(s)	80
LmnI	GCTCC	1 cut(s)	111
Lsp1109I	GCAGC	5 cut(s)	290, 589, 595, 617, 1024
LweI	GCATC	1 cut(s)	496
MaeI	CTAG	6 cut(s)	90, 470, 567, 645, 684, 971
MaeII	ACGT	1 cut(s)	1064
MaeIII	GTNAC	2 cut(s)	51, 679
MalI	GATC	2 cut(s)	654, 1080
MboI	GATC	2 cut(s)	652, 1078
MfeI	CAATTG	1 cut(s)	284
MflI	RGATCY	1 cut(s)	1078
MhlI	GDGCHC	3 cut(s)	116, 271, 437
MlyI	GAGTC	3 cut(s)	461, 611, 938
MmeI	TCCRAC	1 cut(s)	551
MnlI	CCTC	7 cut(s)	177, 194, 217, 239, 686, 736, 958
MroXI	GAANNNNTTC	1 cut(s)	74
MseI	TTAA	3 cut(s)	35, 194, 1061
MslI	CAYNNNNRTG	1 cut(s)	997
MspA1I	CMGCKG	1 cut(s)	608
MspI	CCGG	5 cut(s)	56, 573, 660, 801, 843
MspR9I	CCNGG	2 cut(s)	291, 661
MunI	CAATTG	1 cut(s)	284
MvaI	CCWGG	1 cut(s)	291
MwoI	GCNNNNNNNGC	6 cut(s)	105, 275, 352, 472, 608, 801
NciI	CCSGG	1 cut(s)	661
NcoI	CCATGG	2 cut(s)	504, 787
NdeI	CATATG	1 cut(s)	852
NdeII	GATC	2 cut(s)	652, 1078
NlaIII	CATG	7 cut(s)	248, 485, 508, 791, 799, 979, 1002
NmuCI	GTSAC	1 cut(s)	51
NspI	RCATGY	1 cut(s)	799
PagI	TCATGA	2 cut(s)	481, 975
PceI	AGGCCT	1 cut(s)	187
PciSI	GCTCTTC	1 cut(s)	80
PdmI	GAANNNNTTC	1 cut(s)	74
PfeI	GAWTC	1 cut(s)	545
PkrI	GCNGC	5 cut(s)	280, 604, 607, 610, 1014
PleI	GAGTC	3 cut(s)	460, 611, 937
PpsI	GAGTC	3 cut(s)	460, 611, 937
PpuMI	RGGWCCY	1 cut(s)	226
Psp124BI	GAGCTC	1 cut(s)	116
Psp5II	RGGWCCY	1 cut(s)	226
Psp6I	CCWGG	1 cut(s)	289
PspEI	GGTNACC	1 cut(s)	51
PspGI	CCWGG	1 cut(s)	289
PspPI	GGNCC	4 cut(s)	226, 524, 784, 953
PspPPI	RGGWCCY	1 cut(s)	226
PstI	CTGCAG	1 cut(s)	607
PsuI	RGATCY	1 cut(s)	1078
PvuII	CAGCTG	1 cut(s)	608
RsaI	GTAC	6 cut(s)	565, 571, 583, 665, 688, 892
RsaNI	GTAC	6 cut(s)	564, 570, 582, 664, 687, 891
RseI	CAYNNNNRTG	1 cut(s)	997
SacI	GAGCTC	1 cut(s)	116
SapI	GCTCTTC	1 cut(s)	80
SaqAI	TTAA	3 cut(s)	35, 194, 1061
SatI	GCNGC	5 cut(s)	279, 603, 606, 609, 1013
Sau3AI	GATC	2 cut(s)	652, 1078
Sau96I	GGNCC	4 cut(s)	226, 524, 784, 953
ScaI	AGTACT	2 cut(s)	583, 688
SchI	GAGTC	3 cut(s)	461, 611, 938
ScrFI	CCNGG	2 cut(s)	291, 661
SduI	GDGCHC	3 cut(s)	116, 271, 437
SfaNI	GCATC	1 cut(s)	496
SfcI	CTRYAG	1 cut(s)	603
SinI	GGWCC	3 cut(s)	226, 524, 784
SmiMI	CAYNNNNRTG	1 cut(s)	997
SmlI	CTYRAG	1 cut(s)	181
SmoI	CTYRAG	1 cut(s)	181
SpeI	ACTAGT	5 cut(s)	469, 566, 644, 683, 970
SseBI	AGGCCT	1 cut(s)	187
SsiI	CCGC	1 cut(s)	701
SspMI	CTAG	6 cut(s)	90, 470, 567, 645, 684, 971
SstI	GAGCTC	1 cut(s)	116
StuI	AGGCCT	1 cut(s)	187
StyD4I	CCNGG	2 cut(s)	289, 659
StyI	CCWWGG	2 cut(s)	504, 787
TaiI	ACGT	1 cut(s)	1067
TaqI	TCGA	4 cut(s)	548, 615, 633, 651
TatI	WGTACW	2 cut(s)	581, 686
TfiI	GAWTC	1 cut(s)	545
Tru1I	TTAA	3 cut(s)	35, 194, 1061
Tru9I	TTAA	3 cut(s)	35, 194, 1061
TseFI	GTSAC	1 cut(s)	51
TseI	GCWGC	5 cut(s)	278, 602, 605, 608, 1012
Tsp45I	GTSAC	1 cut(s)	51
TspGWI	ACGGA	1 cut(s)	1047
VpaK11BI	GGWCC	3 cut(s)	226, 524, 784
XapI	RAATTY	4 cut(s)	325, 712, 778, 1033
XceI	RCATGY	1 cut(s)	799
XcmI	CCANNNNNNNNNTGG	1 cut(s)	251
XmnI	GAANNNNTTC	1 cut(s)	74
XspI	CTAG	6 cut(s)	90, 470, 567, 645, 684, 971
ZrmI	AGTACT	2 cut(s)	583, 688

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.