FvH4_5g06070
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0011469
Physical Location & Seq
Forward (+)
3563916 .. 3565909
1994 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g06070.t1

Sequence Viewer

Length: 1134 bp
ATGGGACGCCATTCGTGTTGTTTGAAGCAAAAGTTAAGGAAAGGTCTCTGGTCACCTGAAGAAGACGAGAAGCTCTTCAATTACATCACTAGATTTGGCGTCGGTTGCTGGAGCTCTGTTCCTAAGCTTGCAGGGTTGCAAAGGTGTGGTAAGAGTTGCAGGTTGAGATGGATAAACTACTTGAGGCCTGATTTAAAGAGAGGAATGTTCTCTCAGCAAGAAGAGGACCTCATTATTAGTCTCCATGAAGTTCTTGGCAACAGGTGGGCTCAAATTGCAGCACAATTGCCAGGAAGAACAGACAATGAGATAAAGAACTTCTGGAATTCCTGTTTGAAGAAGAAGCTAATGAAGCAAGGGATTGATCCGACAACTCACAAGCCACTAACAGATGAAGAACTACTACTCAAAGACGATAAGACCAATATAGTCCACTGCTCAGAATTGAATAACGAGTCATCATCTTCCTTGCCACTAATGCCTGCTCATGAGCATCATCAAGAACTTCCTATGGCTAATTCATCACAAGGTCCAACATTTCTCCTTAACGAATCGAGTTACTTTGATGGTACTAGTACCGGAATGAGTACTACACAAGGTTCAAGAGCAGTTGCTGCCTTTGATTCTACTCTATCCTATTTCGAGTTCCAATCGAGTATCGATCCATCCGGGTACAATTCTGATTTTGTTACTAGTACTCAGTATCATCCCCCTACTACCAATTCCATTAGACCCTCTTTCAACTATGAAGCAATTATCGGATACAATTCAATGCCGAGTTTGGCGAATTCGGACCATGGAAGCATGTCAGGCGCCACAGACTTCTCCTTTAGTTCAAGCAATAGCTCAACTACAGGGTTCCATATGAACCACAACAACAATGTAGTGGAAAATAATGCAGGTGCCTTTTCTTGGGATATAAACACAGAGAACAAATTAGAGTCGTTGTTTCATCAATTCAATGGTCCGAAATCAGAGGAACTAGTGATGATGAAGCCTAATTCATCATCATGGGAAGAAGGGCAGCTTCATCATCATCAGCATCAGAACTCAGTAGATTTCAGTAGCTATCCGTTAACGTCGCTTTCAGAAGATCTAACAGGTGCAAACTTTGATGTCTTCCAGCATATTTGA

Protein Analysis

378

Amino Acids

42.38

Weight (kDa)

5.76

Isoelectric Point (pI)

50.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 1.2e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 76 1.5e-11 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 112 1.1e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 70 - 120 1.6e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01680 AT4G01680 AT4G01680
fragaria_vesca FvH4_5g06070
malus_domestica MD06G1167200.v1.1 MD14G1172900.v1.1
prunus_persica Prupe.5G167100_v2.0.a1 Prupe.5G167100_v2.0.a1 Prupe.5G167100_v2.0.a1
pyrus_communis pycom06g14990 pycom14g14420
rosa_chinensis RchiOBHm_Chr7g0192781
rosa_laevigata RLG00000004329
rosa_multiflora Rmu_sc0002040.1_g000020
rosa_roxburghii Rroxscaffold_3G00262690
rosa_rugosa Rorug07G0004600
rosa_samantha Rh7AG129700 Rh7BG131000 Rh7DG131900
rosa_wichuraiana Rw7G011100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 890
Acc36I ACCTGC 2 cut(s) 150, 890
AccB1I GGYRCC 2 cut(s) 812, 902
AclWI GGATC 2 cut(s) 359, 656
AcsI RAATTY 2 cut(s) 325, 787
AcuI CTGAAG 1 cut(s) 78
AcyI GRCGYC 3 cut(s) 7, 99, 813
AfaI GTAC 5 cut(s) 571, 577, 589, 674, 697
AfiI CCNNNNNNNGG 1 cut(s) 912
AgsI TTSAA 9 cut(s) 25, 79, 337, 448, 603, 742, 771, 837, 961
AhlI ACTAGT 3 cut(s) 572, 692, 982
AjnI CCWGG 1 cut(s) 289
AluBI AGCT 7 cut(s) 73, 114, 127, 346, 846, 1027, 1068
AluI AGCT 7 cut(s) 73, 114, 127, 346, 846, 1027, 1068
Alw21I GWGCWC 1 cut(s) 116
Alw26I GTCTC 2 cut(s) 50, 245
AlwI GGATC 2 cut(s) 359, 656
AlwNI CAGNNNCTG 1 cut(s) 614
AoxI GGCC 1 cut(s) 185
ApeKI GCWGC 3 cut(s) 278, 614, 1024
ApoI RAATTY 2 cut(s) 325, 787
Asp700I GAANNNNTTC 1 cut(s) 74
AspLEI GCGC 1 cut(s) 815
AspS9I GGNCC 4 cut(s) 226, 530, 793, 965
AsuC2I CCSGG 1 cut(s) 670
AsuHPI GGTGA 1 cut(s) 45
AvaII GGWCC 4 cut(s) 226, 530, 793, 965
BanI GGYRCC 2 cut(s) 812, 902
BanII GRGCYC 2 cut(s) 116, 271
BarI GAAGNNNNNNTAC 2 cut(s) 387, 419
BbsI GAAGAC 2 cut(s) 69, 1111
Bbv12I GWGCWC 1 cut(s) 116
BbvI GCAGC 3 cut(s) 290, 601, 1036
BccI CCATC 3 cut(s) 162, 560, 673
BciT130I CCWGG 1 cut(s) 291
BciVI GTATCC 1 cut(s) 755
BcnI CCSGG 1 cut(s) 670
BcoDI GTCTC 2 cut(s) 50, 245
BcuI ACTAGT 3 cut(s) 572, 692, 982
BfaI CTAG 4 cut(s) 90, 573, 693, 983
BfmI CTRYAG 1 cut(s) 852
BfoI RGCGCY 1 cut(s) 816
BfuAI ACCTGC 2 cut(s) 150, 890
BfuI GTATCC 1 cut(s) 755
BglII AGATCT 1 cut(s) 1093
BisI GCNGC 3 cut(s) 279, 615, 1025
BlsI GCNGC 3 cut(s) 280, 616, 1026
BmcAI AGTACT 2 cut(s) 589, 697
Bme1390I CCNGG 2 cut(s) 291, 670
Bme18I GGWCC 4 cut(s) 226, 530, 793, 965
BmgT120I GGNCC 4 cut(s) 226, 530, 793, 965
BmiI GGNNCC 3 cut(s) 814, 860, 904
BmrFI CCNGG 2 cut(s) 291, 670
BmsI GCATC 2 cut(s) 502, 1051
BpiI GAAGAC 2 cut(s) 69, 1111
BpmI CTGGAG 1 cut(s) 130
Bpu10I CCTNAGC 1 cut(s) 123
BpuEI CTTGAG 1 cut(s) 202
BpuMI CCSGG 1 cut(s) 670
Bsa29I ATCGAT 1 cut(s) 660
BsaHI GRCGYC 3 cut(s) 7, 99, 813
BsaI GGTCTC 1 cut(s) 50
BsaJI CCNNGG 1 cut(s) 796
BsaWI WCCGGW 1 cut(s) 578
Bsc4I CCNNNNNNNGG 1 cut(s) 912
BseBI CCWGG 1 cut(s) 291
BseCI ATCGAT 1 cut(s) 660
BseDI CCNNGG 1 cut(s) 796
BseGI GGATG 2 cut(s) 665, 706
BseLI CCNNNNNNNGG 1 cut(s) 912
BseMII CTCAG 4 cut(s) 227, 453, 713, 1065
BseXI GCAGC 3 cut(s) 290, 601, 1036
BshFI GGCC 1 cut(s) 187
BshNI GGYRCC 2 cut(s) 812, 902
BshVI ATCGAT 1 cut(s) 660
BsiHKAI GWGCWC 1 cut(s) 116
BsiSI CCGG 2 cut(s) 579, 669
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 1 cut(s) 912
BsmAI GTCTC 2 cut(s) 50, 245
BsmFI GGGAC 1 cut(s) 18
BsnI GGCC 1 cut(s) 187
Bso31I GGTCTC 1 cut(s) 50
Bsp1286I GDGCHC 2 cut(s) 116, 271
Bsp143I GATC 3 cut(s) 364, 661, 1093
Bsp19I CCATGG 1 cut(s) 796
BspANI GGCC 1 cut(s) 187
BspCNI CTCAG 4 cut(s) 226, 452, 712, 1064
BspDI ATCGAT 1 cut(s) 660
BspHI TCATGA 1 cut(s) 487
BspLI GGNNCC 3 cut(s) 814, 860, 904
BspMI ACCTGC 2 cut(s) 150, 890
BspPI GGATC 2 cut(s) 359, 656
BspQI GCTCTTC 1 cut(s) 80
BspT107I GGYRCC 2 cut(s) 812, 902
BspTNI GGTCTC 1 cut(s) 50
BssECI CCNNGG 1 cut(s) 796
BssMI GATC 3 cut(s) 364, 661, 1093
BssNI GRCGYC 3 cut(s) 7, 99, 813
BssT1I CCWWGG 1 cut(s) 796
Bst2UI CCWGG 1 cut(s) 291
Bst6I CTCTTC 2 cut(s) 80, 216
BstACI GRCGYC 3 cut(s) 7, 99, 813
BstAPI GCANNNNNTGC 1 cut(s) 614
BstC8I GCNNGC 2 cut(s) 129, 483
BstDEI CTNAG 5 cut(s) 123, 213, 439, 699, 1051
BstDSI CCRYGG 1 cut(s) 796
BstEII GGTNACC 1 cut(s) 51
BstF5I GGATG 2 cut(s) 665, 706
BstH2I RGCGCY 1 cut(s) 816
BstHHI GCGC 1 cut(s) 815
BstKTI GATC 3 cut(s) 367, 664, 1096
BstMAI GTCTC 2 cut(s) 50, 245
BstMBI GATC 3 cut(s) 364, 661, 1093
BstMWI GCNNNNNNNGC 6 cut(s) 105, 275, 352, 478, 614, 810
BstNI CCWGG 1 cut(s) 291
BstNSI RCATGY 1 cut(s) 808
BstPI GGTNACC 1 cut(s) 51
BstSCI CCNGG 2 cut(s) 289, 668
BstSFI CTRYAG 1 cut(s) 852
BstV1I GCAGC 3 cut(s) 290, 601, 1036
BstV2I GAAGAC 2 cut(s) 69, 1111
BstX2I RGATCY 1 cut(s) 1093
BstYI RGATCY 1 cut(s) 1093
Bsu15I ATCGAT 1 cut(s) 660
BsuI GTATCC 1 cut(s) 755
BsuRI GGCC 1 cut(s) 187
BsuTUI ATCGAT 1 cut(s) 660
BtgI CCRYGG 1 cut(s) 796
BtsCI GGATG 2 cut(s) 665, 706
BtsI GCAGTG 1 cut(s) 433
BtsIMutI CAGTG 1 cut(s) 433
BveI ACCTGC 2 cut(s) 150, 890
Cac8I GCNNGC 2 cut(s) 129, 483
CaiI CAGNNNCTG 1 cut(s) 614
CciI TCATGA 1 cut(s) 487
CfoI GCGC 1 cut(s) 815
Cfr13I GGNCC 4 cut(s) 226, 530, 793, 965
ClaI ATCGAT 1 cut(s) 660
CseI GACGC 2 cut(s) 15, 88
Csp6I GTAC 5 cut(s) 570, 576, 588, 673, 696
CviAII CATG 5 cut(s) 245, 488, 797, 805, 1011
CviQI GTAC 5 cut(s) 570, 576, 588, 673, 696
DdeI CTNAG 5 cut(s) 123, 213, 439, 699, 1051
DinI GGCGCC 1 cut(s) 814
DpnI GATC 3 cut(s) 366, 663, 1095
DpnII GATC 3 cut(s) 364, 661, 1093
DraI TTTAAA 1 cut(s) 195
Eam1104I CTCTTC 2 cut(s) 80, 216
EarI CTCTTC 2 cut(s) 80, 216
Ecl136II GAGCTC 1 cut(s) 114
Eco130I CCWWGG 1 cut(s) 796
Eco147I AGGCCT 1 cut(s) 187
Eco24I GRGCYC 2 cut(s) 116, 271
Eco31I GGTCTC 1 cut(s) 50
Eco47I GGWCC 4 cut(s) 226, 530, 793, 965
Eco53kI GAGCTC 1 cut(s) 114
Eco57I CTGAAG 1 cut(s) 78
Eco91I GGTNACC 1 cut(s) 51
EcoICRI GAGCTC 1 cut(s) 114
EcoO109I RGGNCCY 1 cut(s) 226
EcoO65I GGTNACC 1 cut(s) 51
EcoRI GAATTC 2 cut(s) 325, 787
EcoRII CCWGG 1 cut(s) 289
EcoT14I CCWWGG 1 cut(s) 796
EcoT38I GRGCYC 2 cut(s) 116, 271
EgeI GGCGCC 1 cut(s) 814
EheI GGCGCC 1 cut(s) 814
ErhI CCWWGG 1 cut(s) 796
FaeI CATG 5 cut(s) 248, 491, 800, 808, 1014
FalI AAGNNNNNCTT 2 cut(s) 1011, 1043
FaqI GGGAC 1 cut(s) 18
FatI CATG 5 cut(s) 244, 487, 796, 804, 1010
FauNDI CATATG 1 cut(s) 864
Fnu4HI GCNGC 3 cut(s) 279, 615, 1025
FokI GGATG 2 cut(s) 652, 693
FriOI GRGCYC 2 cut(s) 116, 271
Fsp4HI GCNGC 3 cut(s) 279, 615, 1025
FspBI CTAG 4 cut(s) 90, 573, 693, 983
GlaI GCGC 1 cut(s) 814
GluI GCNGC 3 cut(s) 279, 615, 1025
GsuI CTGGAG 1 cut(s) 130
HaeII RGCGCY 1 cut(s) 816
HaeIII GGCC 1 cut(s) 187
HapII CCGG 2 cut(s) 579, 669
HgaI GACGC 2 cut(s) 15, 88
HhaI GCGC 1 cut(s) 815
Hin1I GRCGYC 3 cut(s) 7, 99, 813
Hin1II CATG 5 cut(s) 248, 491, 800, 808, 1014
Hin6I GCGC 1 cut(s) 813
HinP1I GCGC 1 cut(s) 813
HincII GTYRAC 1 cut(s) 1077
HindII GTYRAC 1 cut(s) 1077
HindIII AAGCTT 1 cut(s) 125
HinfI GANTC 4 cut(s) 455, 551, 623, 941
HpaI GTTAAC 1 cut(s) 1077
HpaII CCGG 2 cut(s) 579, 669
HphI GGTGA 1 cut(s) 45
Hpy166II GTNNAC 2 cut(s) 433, 1077
Hpy188I TCNGA 9 cut(s) 369, 442, 682, 761, 793, 969, 976, 1047, 1090
Hpy188III TCNNGA 4 cut(s) 322, 488, 500, 603
Hpy8I GTNNAC 2 cut(s) 433, 1077
Hpy99I CGWCG 2 cut(s) 104, 1084
HpyAV CCTTC 1 cut(s) 1013
HpyCH4IV ACGT 1 cut(s) 1079
HpyCH4V TGCA 6 cut(s) 131, 139, 159, 278, 899, 1106
HpyF10VI GCNNNNNNNGC 6 cut(s) 105, 275, 352, 478, 614, 810
HpyF3I CTNAG 5 cut(s) 123, 213, 439, 699, 1051
HpySE526I ACGT 1 cut(s) 1079
Hsp92I GRCGYC 3 cut(s) 7, 99, 813
Hsp92II CATG 5 cut(s) 248, 491, 800, 808, 1014
HspAI GCGC 1 cut(s) 813
KasI GGCGCC 1 cut(s) 812
KspAI GTTAAC 1 cut(s) 1077
Kzo9I GATC 3 cut(s) 364, 661, 1093
LguI GCTCTTC 1 cut(s) 80
LmnI GCTCC 1 cut(s) 111
Lsp1109I GCAGC 3 cut(s) 290, 601, 1036
LweI GCATC 2 cut(s) 502, 1051
MaeI CTAG 4 cut(s) 90, 573, 693, 983
MaeII ACGT 1 cut(s) 1079
MaeIII GTNAC 3 cut(s) 51, 557, 688
MalI GATC 3 cut(s) 366, 663, 1095
MboI GATC 3 cut(s) 364, 661, 1093
MfeI CAATTG 1 cut(s) 284
MflI RGATCY 1 cut(s) 1093
MhlI GDGCHC 2 cut(s) 116, 271
Mly113I GGCGCC 1 cut(s) 813
MlyI GAGTC 2 cut(s) 464, 950
MmeI TCCRAC 2 cut(s) 392, 557
MnlI CCTC 6 cut(s) 177, 194, 217, 239, 745, 970
MroXI GAANNNNTTC 1 cut(s) 74
MseI TTAA 4 cut(s) 35, 194, 546, 1076
MslI CAYNNNNRTG 1 cut(s) 1009
MspI CCGG 2 cut(s) 579, 669
MspR9I CCNGG 2 cut(s) 291, 670
MunI CAATTG 1 cut(s) 284
MvaI CCWGG 1 cut(s) 291
MwoI GCNNNNNNNGC 6 cut(s) 105, 275, 352, 478, 614, 810
NarI GGCGCC 1 cut(s) 813
NciI CCSGG 1 cut(s) 670
NcoI CCATGG 1 cut(s) 796
NdeI CATATG 1 cut(s) 864
NdeII GATC 3 cut(s) 364, 661, 1093
NlaIII CATG 5 cut(s) 248, 491, 800, 808, 1014
NlaIV GGNNCC 3 cut(s) 814, 860, 904
NmeAIII GCCGAG 1 cut(s) 801
NmuCI GTSAC 1 cut(s) 51
NspI RCATGY 1 cut(s) 808
PagI TCATGA 1 cut(s) 487
PaqCI CACCTGC 1 cut(s) 890
PceI AGGCCT 1 cut(s) 187
PciSI GCTCTTC 1 cut(s) 80
PdmI GAANNNNTTC 1 cut(s) 74
PfeI GAWTC 2 cut(s) 551, 623
PkrI GCNGC 3 cut(s) 280, 616, 1026
PleI GAGTC 2 cut(s) 463, 949
PluTI GGCGCC 1 cut(s) 816
PpsI GAGTC 2 cut(s) 463, 949
PpuMI RGGWCCY 1 cut(s) 226
Psp124BI GAGCTC 1 cut(s) 116
Psp5II RGGWCCY 1 cut(s) 226
Psp6I CCWGG 1 cut(s) 289
PspEI GGTNACC 1 cut(s) 51
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 3 cut(s) 814, 860, 904
PspPI GGNCC 4 cut(s) 226, 530, 793, 965
PspPPI RGGWCCY 1 cut(s) 226
PstNI CAGNNNCTG 1 cut(s) 614
PsuI RGATCY 1 cut(s) 1093
RsaI GTAC 5 cut(s) 571, 577, 589, 674, 697
RsaNI GTAC 5 cut(s) 570, 576, 588, 673, 696
RseI CAYNNNNRTG 1 cut(s) 1009
SacI GAGCTC 1 cut(s) 116
SapI GCTCTTC 1 cut(s) 80
SaqAI TTAA 4 cut(s) 35, 194, 546, 1076
SatI GCNGC 3 cut(s) 279, 615, 1025
Sau3AI GATC 3 cut(s) 364, 661, 1093
Sau96I GGNCC 4 cut(s) 226, 530, 793, 965
ScaI AGTACT 2 cut(s) 589, 697
SchI GAGTC 2 cut(s) 464, 950
ScrFI CCNGG 2 cut(s) 291, 670
SduI GDGCHC 2 cut(s) 116, 271
SfaNI GCATC 2 cut(s) 502, 1051
SfcI CTRYAG 1 cut(s) 852
SfoI GGCGCC 1 cut(s) 814
SinI GGWCC 4 cut(s) 226, 530, 793, 965
SmiMI CAYNNNNRTG 1 cut(s) 1009
SmlI CTYRAG 1 cut(s) 181
SmoI CTYRAG 1 cut(s) 181
SpeI ACTAGT 3 cut(s) 572, 692, 982
SseBI AGGCCT 1 cut(s) 187
SspDI GGCGCC 1 cut(s) 812
SspMI CTAG 4 cut(s) 90, 573, 693, 983
SstI GAGCTC 1 cut(s) 116
StuI AGGCCT 1 cut(s) 187
StyD4I CCNGG 2 cut(s) 289, 668
StyI CCWWGG 1 cut(s) 796
TaiI ACGT 1 cut(s) 1082
TaqI TCGA 4 cut(s) 554, 642, 653, 660
TatI WGTACW 2 cut(s) 587, 695
TfiI GAWTC 2 cut(s) 551, 623
Tru1I TTAA 4 cut(s) 35, 194, 546, 1076
Tru9I TTAA 4 cut(s) 35, 194, 546, 1076
TscAI CASTG 1 cut(s) 440
TseFI GTSAC 1 cut(s) 51
TseI GCWGC 3 cut(s) 278, 614, 1024
Tsp45I GTSAC 1 cut(s) 51
TspGWI ACGGA 1 cut(s) 1062
TspRI CASTG 1 cut(s) 440
VpaK11BI GGWCC 4 cut(s) 226, 530, 793, 965
XapI RAATTY 2 cut(s) 325, 787
XceI RCATGY 1 cut(s) 808
XcmI CCANNNNNNNNNTGG 1 cut(s) 251
XmnI GAANNNNTTC 1 cut(s) 74
XspI CTAG 4 cut(s) 90, 573, 693, 983
ZrmI AGTACT 2 cut(s) 589, 697
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.