Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0011469

Physical Location & Seq

Genomic Coordinates Reverse (-)

14440449 .. 14442749

Gene Structure 2301 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G167100.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGGGACGCCATTCGTGTTGTTTGAAGCAGAAGTTAAGGAAAGGTCTGTGGTCACCAGAAGAAGATGAGAAGCTCTTCAATTACATCACCAGGTTTGGTGTTGGTTGCTGGAGTTCAGTCCCAAAGCTTGCTGGTTTGCAGAGGTGTGGAAAGAGTTGCAGGTTGAGATGGATAAACTATTTGAGGCCTGATTTGAAGAGAGGGATGTTCTCACAACAAGAAGAGGATCTCATTATCAGTCTCCATGAAGTTCTTGGCAACAGGTGGGCTCAAATTGCAGCACAATTACCAGGCAGAACAGACAATGAGATAAAGAACTTCTGGAATTCATGCTTGAAGAAGAAGCTACTGAAGCAAGGAATTGACCCAACTACCCACAAGCCACTAAGCGAAGAAGAAATGAAAGAGAAGAAGAGTATGGATTGTTCAGAATTAAAAGAATGTTTGCCAATGCCAGAGCATGAACAAGGGCTTCCAACTATACCAGCCATGTCTTCCTCCCAAGGTCCAACATTTCTTGTCAATGATTCAAATTACTTTGATGGAGCTGGAGTTTTAACACAAGCCTCAAGAGCCTTTGATTCTCTCTCTTACTTTGAGTTCCAAACAGGTATTGAGCCATCTGGCTACAATTCAGATCTTGTTTCCACTCAATACCACCCTACCAATGTTAGACCCCATTTCAATCAACCCCATAATACTACTTATGAGACAAGCTCAAATTTTGGGTTCACTTCAATGCCAAGCTTAGCAAATTCGGACCACGGGAGCATGTCAGGGACAGATTTTTCTGATAATTCAGCTTCAAGACTGAGCTCATTTTTCATGAATGAAGTGAAGGAATGTTCAAGCAATAGCTCCAATGTGAGCAGCTATGCAGCAGGGTTCCATATGAACAACAACAGCAACAACAACAACAACAACAACGTAGTCGAAAATGCAGCTTTTTCATGGGACACAGATAACAAACTAGACTCCTTGTTTCAATTCCATGCCAATGGGATAAAATCAGAGGAGCTTATCAAACCCAATTCATGGCAACAAGGGCAGCAGCTTCTTCATGCTCAAAATTCTGTAGATTTCAATAGCTATCCGTTAACGTCGCTGTCAGAAGATCTAACAGAGGCCAAAGCTGCTCTGCACCAAACAGCTAGCAGCTACAAACTAATTCTTGATTTGCATTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

396

Amino Acids

44.46

Weight (kDa)

5.91

Isoelectric Point (pI)

50.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011469)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01680 AT4G01680 AT4G01680
fragaria_vesca	FvH4_5g06070
malus_domestica	MD06G1167200.v1.1 MD14G1172900.v1.1
prunus_persica	Prupe.5G167100_v2.0.a1 Prupe.5G167100_v2.0.a1 Prupe.5G167100_v2.0.a1
pyrus_communis	pycom06g14990 pycom14g14420
rosa_chinensis	RchiOBHm_Chr7g0192781
rosa_laevigata	RLG00000004329
rosa_multiflora	Rmu_sc0002040.1_g000020
rosa_roxburghii	Rroxscaffold_3G00262690
rosa_rugosa	Rorug07G0004600
rosa_samantha	Rh7AG129700 Rh7BG131000 Rh7DG131900
rosa_wichuraiana	Rw7G011100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	150
AccB7I	CCANNNNNTGG	1 cut(s)	1035
AclWI	GGATC	1 cut(s)	234
AcsI	RAATTY	4 cut(s)	325, 721, 754, 1069
AcuI	CTGAAG	1 cut(s)	371
AcyI	GRCGYC	1 cut(s)	7
AfiI	CCNNNNNNNGG	1 cut(s)	1035
AjnI	CCWGG	2 cut(s)	89, 289
Alw21I	GWGCWC	1 cut(s)	818
Alw26I	GTCTC	2 cut(s)	245, 704
AlwI	GGATC	1 cut(s)	234
AoxI	GGCC	2 cut(s)	185, 1125
ApeKI	GCWGC	8 cut(s)	278, 870, 878, 941, 1048, 1051, 1133, 1155
ApoI	RAATTY	4 cut(s)	325, 721, 754, 1069
Asp700I	GAANNNNTTC	1 cut(s)	74
AspS9I	GGNCC	2 cut(s)	506, 760
AsuHPI	GGTGA	2 cut(s)	45, 79
AsuNHI	GCTAGC	1 cut(s)	1151
AvaII	GGWCC	2 cut(s)	506, 760
BanII	GRGCYC	2 cut(s)	271, 818
BbsI	GAAGAC	1 cut(s)	486
Bbv12I	GWGCWC	1 cut(s)	818
BbvI	GCAGC	8 cut(s)	290, 882, 890, 953, 1060, 1063, 1120, 1167
BccI	CCATC	3 cut(s)	162, 536, 628
BciT130I	CCWGG	2 cut(s)	91, 291
BcoDI	GTCTC	2 cut(s)	245, 704
BfaI	CTAG	2 cut(s)	971, 1152
BfmI	CTRYAG	1 cut(s)	1074
BfuAI	ACCTGC	1 cut(s)	150
BglII	AGATCT	2 cut(s)	637, 1114
BisI	GCNGC	8 cut(s)	279, 871, 879, 942, 1049, 1052, 1134, 1156
BlpI	GCTNAGC	1 cut(s)	748
BlsI	GCNGC	8 cut(s)	280, 872, 880, 943, 1050, 1053, 1135, 1157
Bme1390I	CCNGG	2 cut(s)	91, 291
Bme18I	GGWCC	2 cut(s)	506, 760
BmgT120I	GGNCC	2 cut(s)	506, 760
BmiI	GGNNCC	1 cut(s)	887
BmrFI	CCNGG	2 cut(s)	91, 291
BmtI	GCTAGC	1 cut(s)	1155
BpiI	GAAGAC	1 cut(s)	486
BplI	GAGNNNNNCTC	2 cut(s)	701, 733
BpmI	CTGGAG	2 cut(s)	130, 570
Bpu1102I	GCTNAGC	1 cut(s)	748
BpuEI	CTTGAG	1 cut(s)	553
BsaHI	GRCGYC	1 cut(s)	7
BsaJI	CCNNGG	2 cut(s)	502, 763
BsaXI	ACNNNNNCTCC	2 cut(s)	537, 567
Bsc4I	CCNNNNNNNGG	1 cut(s)	1035
BseBI	CCWGG	2 cut(s)	91, 291
BseDI	CCNNGG	2 cut(s)	502, 763
BseGI	GGATG	1 cut(s)	210
BseLI	CCNNNNNNNGG	1 cut(s)	1035
BseMII	CTCAG	1 cut(s)	803
BseRI	GAGGAG	1 cut(s)	1028
BseXI	GCAGC	8 cut(s)	290, 882, 890, 953, 1060, 1063, 1120, 1167
BsgI	GTGCAG	1 cut(s)	1124
BshFI	GGCC	2 cut(s)	187, 1127
BsiHKAI	GWGCWC	1 cut(s)	818
BslFI	GGGAC	4 cut(s)	18, 104, 793, 968
BslI	CCNNNNNNNGG	1 cut(s)	1035
BsmAI	GTCTC	2 cut(s)	245, 704
BsmFI	GGGAC	4 cut(s)	18, 104, 793, 968
BsnI	GGCC	2 cut(s)	187, 1127
Bsp1286I	GDGCHC	2 cut(s)	271, 818
Bsp143I	GATC	3 cut(s)	226, 637, 1114
Bsp1720I	GCTNAGC	1 cut(s)	748
BspANI	GGCC	2 cut(s)	187, 1127
BspCNI	CTCAG	1 cut(s)	804
BspHI	TCATGA	1 cut(s)	825
BspLI	GGNNCC	1 cut(s)	887
BspMI	ACCTGC	1 cut(s)	150
BspOI	GCTAGC	1 cut(s)	1155
BspPI	GGATC	1 cut(s)	234
BspQI	GCTCTTC	1 cut(s)	80
BssECI	CCNNGG	2 cut(s)	502, 763
BssMI	GATC	3 cut(s)	226, 637, 1114
BssNI	GRCGYC	1 cut(s)	7
BssT1I	CCWWGG	1 cut(s)	502
Bst2UI	CCWGG	2 cut(s)	91, 291
Bst6I	CTCTTC	4 cut(s)	80, 191, 216, 407
BstACI	GRCGYC	1 cut(s)	7
BstC8I	GCNNGC	2 cut(s)	129, 1153
BstDEI	CTNAG	3 cut(s)	386, 748, 812
BstDSI	CCRYGG	1 cut(s)	763
BstEII	GGTNACC	1 cut(s)	51
BstF5I	GGATG	1 cut(s)	210
BstKTI	GATC	3 cut(s)	229, 640, 1117
BstMAI	GTCTC	2 cut(s)	245, 704
BstMBI	GATC	3 cut(s)	226, 637, 1114
BstMWI	GCNNNNNNNGC	5 cut(s)	275, 352, 572, 1045, 1133
BstNI	CCWGG	2 cut(s)	91, 291
BstNSI	RCATGY	1 cut(s)	775
BstPI	GGTNACC	1 cut(s)	51
BstSCI	CCNGG	2 cut(s)	89, 289
BstSFI	CTRYAG	1 cut(s)	1074
BstV1I	GCAGC	8 cut(s)	290, 882, 890, 953, 1060, 1063, 1120, 1167
BstV2I	GAAGAC	1 cut(s)	486
BstX2I	RGATCY	3 cut(s)	226, 637, 1114
BstXI	CCANNNNNNTGG	1 cut(s)	998
BstYI	RGATCY	3 cut(s)	226, 637, 1114
BsuRI	GGCC	2 cut(s)	187, 1127
BtgI	CCRYGG	1 cut(s)	763
BtsCI	GGATG	1 cut(s)	210
BveI	ACCTGC	1 cut(s)	150
Cac8I	GCNNGC	2 cut(s)	129, 1153
CciI	TCATGA	1 cut(s)	825
Cfr13I	GGNCC	2 cut(s)	506, 760
CseI	GACGC	1 cut(s)	15
CsiI	ACCWGGT	1 cut(s)	89
DdeI	CTNAG	3 cut(s)	386, 748, 812
DpnI	GATC	3 cut(s)	228, 639, 1116
DpnII	GATC	3 cut(s)	226, 637, 1114
Eam1104I	CTCTTC	4 cut(s)	80, 191, 216, 407
EarI	CTCTTC	4 cut(s)	80, 191, 216, 407
Ecl136II	GAGCTC	1 cut(s)	816
Eco130I	CCWWGG	1 cut(s)	502
Eco147I	AGGCCT	1 cut(s)	187
Eco24I	GRGCYC	2 cut(s)	271, 818
Eco47I	GGWCC	2 cut(s)	506, 760
Eco53kI	GAGCTC	1 cut(s)	816
Eco57I	CTGAAG	1 cut(s)	371
Eco91I	GGTNACC	1 cut(s)	51
EcoICRI	GAGCTC	1 cut(s)	816
EcoO65I	GGTNACC	1 cut(s)	51
EcoRI	GAATTC	1 cut(s)	325
EcoRII	CCWGG	2 cut(s)	89, 289
EcoT14I	CCWWGG	1 cut(s)	502
EcoT38I	GRGCYC	2 cut(s)	271, 818
ErhI	CCWWGG	1 cut(s)	502
FaqI	GGGAC	4 cut(s)	18, 104, 793, 968
FauNDI	CATATG	1 cut(s)	891
Fnu4HI	GCNGC	8 cut(s)	279, 871, 879, 942, 1049, 1052, 1134, 1156
FokI	GGATG	1 cut(s)	217
FriOI	GRGCYC	2 cut(s)	271, 818
Fsp4HI	GCNGC	8 cut(s)	279, 871, 879, 942, 1049, 1052, 1134, 1156
FspBI	CTAG	2 cut(s)	971, 1152
GluI	GCNGC	8 cut(s)	279, 871, 879, 942, 1049, 1052, 1134, 1156
GsuI	CTGGAG	2 cut(s)	130, 570
HaeIII	GGCC	2 cut(s)	187, 1127
HgaI	GACGC	1 cut(s)	15
Hin1I	GRCGYC	1 cut(s)	7
HincII	GTYRAC	1 cut(s)	1098
HindII	GTYRAC	1 cut(s)	1098
HindIII	AAGCTT	2 cut(s)	125, 745
HinfI	GANTC	3 cut(s)	527, 581, 974
HpaI	GTTAAC	1 cut(s)	1098
HphI	GGTGA	2 cut(s)	45, 79
Hpy166II	GTNNAC	2 cut(s)	732, 1098
Hpy188I	TCNGA	6 cut(s)	430, 637, 760, 793, 1012, 1111
Hpy188III	TCNNGA	5 cut(s)	322, 570, 807, 826, 1172
Hpy8I	GTNNAC	2 cut(s)	732, 1098
Hpy99I	CGWCG	1 cut(s)	1105
HpyAV	CCTTC	1 cut(s)	832
HpyCH4IV	ACGT	2 cut(s)	927, 1100
HpyCH4V	TGCA	7 cut(s)	139, 159, 278, 878, 941, 1141, 1180
HpyF10VI	GCNNNNNNNGC	5 cut(s)	275, 352, 572, 1045, 1133
HpyF3I	CTNAG	3 cut(s)	386, 748, 812
HpySE526I	ACGT	2 cut(s)	927, 1100
Hsp92I	GRCGYC	1 cut(s)	7
KspAI	GTTAAC	1 cut(s)	1098
Kzo9I	GATC	3 cut(s)	226, 637, 1114
LguI	GCTCTTC	1 cut(s)	80
LmnI	GCTCC	4 cut(s)	545, 768, 863, 1015
Lsp1109I	GCAGC	8 cut(s)	290, 882, 890, 953, 1060, 1063, 1120, 1167
MabI	ACCWGGT	1 cut(s)	89
MaeI	CTAG	2 cut(s)	971, 1152
MaeII	ACGT	2 cut(s)	927, 1100
MaeIII	GTNAC	1 cut(s)	51
MalI	GATC	3 cut(s)	228, 639, 1116
MboI	GATC	3 cut(s)	226, 637, 1114
MflI	RGATCY	3 cut(s)	226, 637, 1114
MhlI	GDGCHC	2 cut(s)	271, 818
MlyI	GAGTC	1 cut(s)	968
MmeI	TCCRAC	2 cut(s)	500, 533
MnlI	CCTC	8 cut(s)	135, 177, 194, 217, 508, 577, 1006, 1117
MroXI	GAANNNNTTC	1 cut(s)	74
MseI	TTAA	5 cut(s)	35, 434, 557, 1097, 1186
MslI	CAYNNNNRTG	2 cut(s)	737, 996
MspR9I	CCNGG	2 cut(s)	91, 291
MvaI	CCWGG	2 cut(s)	91, 291
MwoI	GCNNNNNNNGC	5 cut(s)	275, 352, 572, 1045, 1133
NdeI	CATATG	1 cut(s)	891
NdeII	GATC	3 cut(s)	226, 637, 1114
NheI	GCTAGC	1 cut(s)	1151
NlaIV	GGNNCC	1 cut(s)	887
NmuCI	GTSAC	1 cut(s)	51
NspI	RCATGY	1 cut(s)	775
PagI	TCATGA	1 cut(s)	825
PceI	AGGCCT	1 cut(s)	187
PciSI	GCTCTTC	1 cut(s)	80
PdmI	GAANNNNTTC	1 cut(s)	74
PfeI	GAWTC	2 cut(s)	527, 581
PflMI	CCANNNNNTGG	1 cut(s)	1035
PkrI	GCNGC	8 cut(s)	280, 872, 880, 943, 1050, 1053, 1135, 1157
PleI	GAGTC	1 cut(s)	968
PpsI	GAGTC	1 cut(s)	968
Psp124BI	GAGCTC	1 cut(s)	818
Psp6I	CCWGG	2 cut(s)	89, 289
PspEI	GGTNACC	1 cut(s)	51
PspGI	CCWGG	2 cut(s)	89, 289
PspN4I	GGNNCC	1 cut(s)	887
PspPI	GGNCC	2 cut(s)	506, 760
PsrI	GAACNNNNNNTAC	2 cut(s)	409, 441
PsuI	RGATCY	3 cut(s)	226, 637, 1114
RseI	CAYNNNNRTG	2 cut(s)	737, 996
SacI	GAGCTC	1 cut(s)	818
SapI	GCTCTTC	1 cut(s)	80
SaqAI	TTAA	5 cut(s)	35, 434, 557, 1097, 1186
SatI	GCNGC	8 cut(s)	279, 871, 879, 942, 1049, 1052, 1134, 1156
Sau3AI	GATC	3 cut(s)	226, 637, 1114
Sau96I	GGNCC	2 cut(s)	506, 760
SchI	GAGTC	1 cut(s)	968
ScrFI	CCNGG	2 cut(s)	91, 291
SduI	GDGCHC	2 cut(s)	271, 818
SexAI	ACCWGGT	1 cut(s)	89
SfcI	CTRYAG	1 cut(s)	1074
SinI	GGWCC	2 cut(s)	506, 760
SmiMI	CAYNNNNRTG	2 cut(s)	737, 996
SmlI	CTYRAG	1 cut(s)	568
SmoI	CTYRAG	1 cut(s)	568
SseBI	AGGCCT	1 cut(s)	187
SspMI	CTAG	2 cut(s)	971, 1152
SstI	GAGCTC	1 cut(s)	818
StuI	AGGCCT	1 cut(s)	187
StyD4I	CCNGG	2 cut(s)	89, 289
StyI	CCWWGG	1 cut(s)	502
TaiI	ACGT	2 cut(s)	930, 1103
TaqI	TCGA	1 cut(s)	933
TfiI	GAWTC	2 cut(s)	527, 581
Tru1I	TTAA	5 cut(s)	35, 434, 557, 1097, 1186
Tru9I	TTAA	5 cut(s)	35, 434, 557, 1097, 1186
TseFI	GTSAC	1 cut(s)	51
TseI	GCWGC	8 cut(s)	278, 870, 878, 941, 1048, 1051, 1133, 1155
Tsp45I	GTSAC	1 cut(s)	51
TspGWI	ACGGA	1 cut(s)	1083
Van91I	CCANNNNNTGG	1 cut(s)	1035
VpaK11BI	GGWCC	2 cut(s)	506, 760
XapI	RAATTY	4 cut(s)	325, 721, 754, 1069
XceI	RCATGY	1 cut(s)	775
XcmI	CCANNNNNNNNNTGG	1 cut(s)	251
XmnI	GAANNNNTTC	1 cut(s)	74
XspI	CTAG	2 cut(s)	971, 1152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.