RLG00000004329
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0011469
Physical Location & Seq
Forward (+)
58388688 .. 58390218
1531 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004329

Sequence Viewer

Length: 1119 bp
ATGGGACGCCATTCGTGTTGTTTGAAGCAAAAGTTAAGGAAAGGTCTCTGGTCACCGGAAGAAGACGAGAAGCTCTTCAATTACATCACTAGATTTGGCGTCGGTTGCTGGAGCTCTGTCCCCAAGCTTGCAGGGTTGCAAAGATGTGGTAAGAGTTGCAGGTTGAGATGGATAAACTACTTGAGGCCTGATTTAAAGAGAGGAATGTTCTCTCAGCAAGAAGAGGACCTCATTATTAGTCTCCATGAAGTTCTTGGGAACAGGTGGGCTCAAATTGCAGCACAATTGCCAGGAAGAACAGATAATGAGATAAAGAACTTCTGGAATTCGTGTTTGAAGAAGAAGCTAATGAAGCAAGGGATTGACCCGACCACTCACAAGCCACTAACAGATGAACAACTACTCAAAGACGATAAGACGAATATAGTCAAGTGCTCAGAATTGAATAACGAGTCTTCATCCTTGCCACTAGTGCCAGTTCATGAGCATCACCACGAACTTCCCATGGCTAATTCATCACAAGGTCCAACATTTCTCGTCAACGATTCGAGCTATTTTGATGGTACTAGTACCGGAATAAGTACTACACAAACTTCCAGAGCTGCAGCTGCCTTCGACTCTCTATCCTATTTCGAGTTCCAAACTAGTATCCATCCATCCGGGTACAATTCTGACCTCGTTACTAGTACTCAATATCATCCGCCCACTACAAATTCCATTAGACCCTCTTTCAACTATGAGGCAATTATCGGATACAATTCTATGCCAAGTTTGGCGAATTCCGACCATGGAAGCATTTCCGGCACAGACTTCTCCTTTAGTTCAAGCAATAGCTCAACTGCAGGTTTCCATATGAACCACAACAACAATGTAGTGGAAAATAATGCAGGTACTTTTTCTTGGGATATAAACACAGAGAACAAATTAGAGTCCTTGTTTCATCAATTTGATGGCCCGAAATCAGAGGAACTGGTCATGATGAAGCCCAATTCATCATCATGGGAAGAAGGGCAGCTTCATCATCAACATCAGAATTCAGTAGATTTTAGTAGCTATCCGTTAACGTCGCTATCAGAAGATCTAACAGGTGCAAACTTTGATGTCTTCCAGCATATTTGA

Protein Analysis

373

Amino Acids

41.82

Weight (kDa)

5.92

Isoelectric Point (pI)

46.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 1.2e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 76 1.4e-11 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 112 1.1e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 70 - 120 1.5e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01680 AT4G01680 AT4G01680
fragaria_vesca FvH4_5g06070
malus_domestica MD06G1167200.v1.1 MD14G1172900.v1.1
prunus_persica Prupe.5G167100_v2.0.a1 Prupe.5G167100_v2.0.a1 Prupe.5G167100_v2.0.a1
pyrus_communis pycom06g14990 pycom14g14420
rosa_chinensis RchiOBHm_Chr7g0192781
rosa_laevigata RLG00000004329
rosa_multiflora Rmu_sc0002040.1_g000020
rosa_roxburghii Rroxscaffold_3G00262690
rosa_rugosa Rorug07G0004600
rosa_samantha Rh7AG129700 Rh7BG131000 Rh7DG131900
rosa_wichuraiana Rw7G011100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 150, 833, 878
AciI CCGC 1 cut(s) 701
AcsI RAATTY 4 cut(s) 325, 712, 778, 1033
AcyI GRCGYC 2 cut(s) 7, 99
AfaI GTAC 6 cut(s) 565, 571, 583, 665, 688, 892
AgsI TTSAA 6 cut(s) 25, 79, 337, 445, 733, 825
AhlI ACTAGT 4 cut(s) 469, 566, 644, 683
AjnI CCWGG 1 cut(s) 289
Alw21I GWGCWC 2 cut(s) 116, 437
Alw26I GTCTC 2 cut(s) 50, 245
AoxI GGCC 2 cut(s) 185, 952
ApeKI GCWGC 5 cut(s) 278, 602, 605, 608, 1012
ApoI RAATTY 4 cut(s) 325, 712, 778, 1033
Asp700I GAANNNNTTC 2 cut(s) 74, 796
AspS9I GGNCC 3 cut(s) 226, 524, 953
AsuC2I CCSGG 1 cut(s) 661
AsuHPI GGTGA 2 cut(s) 45, 482
AvaII GGWCC 2 cut(s) 226, 524
BanII GRGCYC 2 cut(s) 116, 271
BbsI GAAGAC 3 cut(s) 69, 447, 1096
Bbv12I GWGCWC 2 cut(s) 116, 437
BbvI GCAGC 5 cut(s) 290, 589, 595, 617, 1024
BccI CCATC 5 cut(s) 162, 554, 660, 664, 944
BciT130I CCWGG 1 cut(s) 291
BciVI GTATCC 2 cut(s) 659, 746
BcnI CCSGG 1 cut(s) 661
BcoDI GTCTC 2 cut(s) 50, 245
BcuI ACTAGT 4 cut(s) 469, 566, 644, 683
BfaI CTAG 5 cut(s) 90, 470, 567, 645, 684
BfmI CTRYAG 2 cut(s) 603, 840
BfuAI ACCTGC 3 cut(s) 150, 833, 878
BfuI GTATCC 2 cut(s) 659, 746
BglII AGATCT 1 cut(s) 1078
BisI GCNGC 5 cut(s) 279, 603, 606, 609, 1013
BlsI GCNGC 5 cut(s) 280, 604, 607, 610, 1014
BmcAI AGTACT 2 cut(s) 583, 688
Bme1390I CCNGG 2 cut(s) 291, 661
Bme18I GGWCC 2 cut(s) 226, 524
BmgT120I GGNCC 3 cut(s) 226, 524, 953
BmrFI CCNGG 2 cut(s) 291, 661
BmsI GCATC 1 cut(s) 496
BpiI GAAGAC 3 cut(s) 69, 447, 1096
BpmI CTGGAG 1 cut(s) 130
BpuEI CTTGAG 1 cut(s) 202
BpuMI CCSGG 1 cut(s) 661
BsaHI GRCGYC 2 cut(s) 7, 99
BsaI GGTCTC 1 cut(s) 50
BsaJI CCNNGG 2 cut(s) 504, 787
BsaWI WCCGGW 2 cut(s) 55, 572
Bse1I ACTGG 2 cut(s) 476, 975
BseBI CCWGG 1 cut(s) 291
BseDI CCNNGG 2 cut(s) 504, 787
BseGI GGATG 4 cut(s) 458, 652, 656, 697
BseMII CTCAG 2 cut(s) 227, 450
BseNI ACTGG 2 cut(s) 476, 975
BseXI GCAGC 5 cut(s) 290, 589, 595, 617, 1024
BshFI GGCC 2 cut(s) 187, 954
BsiHKAI GWGCWC 2 cut(s) 116, 437
BsiSI CCGG 4 cut(s) 56, 573, 660, 801
BslFI GGGAC 2 cut(s) 18, 104
BsmAI GTCTC 2 cut(s) 50, 245
BsmFI GGGAC 2 cut(s) 18, 104
BsnI GGCC 2 cut(s) 187, 954
Bso31I GGTCTC 1 cut(s) 50
Bsp1286I GDGCHC 3 cut(s) 116, 271, 437
Bsp143I GATC 1 cut(s) 1078
Bsp19I CCATGG 2 cut(s) 504, 787
BspACI CCGC 1 cut(s) 701
BspANI GGCC 2 cut(s) 187, 954
BspCNI CTCAG 2 cut(s) 226, 449
BspHI TCATGA 2 cut(s) 481, 975
BspMAI CTGCAG 2 cut(s) 607, 844
BspMI ACCTGC 3 cut(s) 150, 833, 878
BspQI GCTCTTC 1 cut(s) 80
BspTNI GGTCTC 1 cut(s) 50
BsrI ACTGG 2 cut(s) 476, 975
BssECI CCNNGG 2 cut(s) 504, 787
BssMI GATC 1 cut(s) 1078
BssNI GRCGYC 2 cut(s) 7, 99
BssT1I CCWWGG 2 cut(s) 504, 787
Bst2UI CCWGG 1 cut(s) 291
Bst6I CTCTTC 2 cut(s) 80, 216
BstACI GRCGYC 2 cut(s) 7, 99
BstC8I GCNNGC 1 cut(s) 129
BstDEI CTNAG 2 cut(s) 213, 436
BstDSI CCRYGG 2 cut(s) 504, 787
BstEII GGTNACC 1 cut(s) 51
BstF5I GGATG 4 cut(s) 458, 652, 656, 697
BstKTI GATC 1 cut(s) 1081
BstMAI GTCTC 2 cut(s) 50, 245
BstMBI GATC 1 cut(s) 1078
BstMWI GCNNNNNNNGC 6 cut(s) 105, 275, 352, 472, 608, 801
BstNI CCWGG 1 cut(s) 291
BstPI GGTNACC 1 cut(s) 51
BstSCI CCNGG 2 cut(s) 289, 659
BstSFI CTRYAG 2 cut(s) 603, 840
BstV1I GCAGC 5 cut(s) 290, 589, 595, 617, 1024
BstV2I GAAGAC 3 cut(s) 69, 447, 1096
BstX2I RGATCY 1 cut(s) 1078
BstYI RGATCY 1 cut(s) 1078
BsuI GTATCC 2 cut(s) 659, 746
BsuRI GGCC 2 cut(s) 187, 954
BtgI CCRYGG 2 cut(s) 504, 787
BtsCI GGATG 4 cut(s) 458, 652, 656, 697
BveI ACCTGC 3 cut(s) 150, 833, 878
Cac8I GCNNGC 1 cut(s) 129
CciI TCATGA 2 cut(s) 481, 975
Cfr13I GGNCC 3 cut(s) 226, 524, 953
CseI GACGC 2 cut(s) 15, 88
Csp6I GTAC 6 cut(s) 564, 570, 582, 664, 687, 891
CviAII CATG 6 cut(s) 245, 482, 505, 788, 976, 999
CviQI GTAC 6 cut(s) 564, 570, 582, 664, 687, 891
DdeI CTNAG 2 cut(s) 213, 436
DpnI GATC 1 cut(s) 1080
DpnII GATC 1 cut(s) 1078
DraI TTTAAA 1 cut(s) 195
Eam1104I CTCTTC 2 cut(s) 80, 216
EarI CTCTTC 2 cut(s) 80, 216
EciI GGCGGA 1 cut(s) 690
Ecl136II GAGCTC 1 cut(s) 114
Eco130I CCWWGG 2 cut(s) 504, 787
Eco147I AGGCCT 1 cut(s) 187
Eco24I GRGCYC 2 cut(s) 116, 271
Eco31I GGTCTC 1 cut(s) 50
Eco47I GGWCC 2 cut(s) 226, 524
Eco53kI GAGCTC 1 cut(s) 114
Eco91I GGTNACC 1 cut(s) 51
EcoICRI GAGCTC 1 cut(s) 114
EcoO109I RGGNCCY 1 cut(s) 226
EcoO65I GGTNACC 1 cut(s) 51
EcoRI GAATTC 3 cut(s) 325, 778, 1033
EcoRII CCWGG 1 cut(s) 289
EcoT14I CCWWGG 2 cut(s) 504, 787
EcoT38I GRGCYC 2 cut(s) 116, 271
ErhI CCWWGG 2 cut(s) 504, 787
FaeI CATG 6 cut(s) 248, 485, 508, 791, 979, 1002
FalI AAGNNNNNCTT 2 cut(s) 999, 1031
FaqI GGGAC 2 cut(s) 18, 104
FatI CATG 6 cut(s) 244, 481, 504, 787, 975, 998
FauNDI CATATG 1 cut(s) 852
Fnu4HI GCNGC 5 cut(s) 279, 603, 606, 609, 1013
FokI GGATG 4 cut(s) 445, 639, 643, 684
FriOI GRGCYC 2 cut(s) 116, 271
Fsp4HI GCNGC 5 cut(s) 279, 603, 606, 609, 1013
FspBI CTAG 5 cut(s) 90, 470, 567, 645, 684
GluI GCNGC 5 cut(s) 279, 603, 606, 609, 1013
GsuI CTGGAG 1 cut(s) 130
HaeIII GGCC 2 cut(s) 187, 954
HapII CCGG 4 cut(s) 56, 573, 660, 801
HgaI GACGC 2 cut(s) 15, 88
Hin1I GRCGYC 2 cut(s) 7, 99
Hin1II CATG 6 cut(s) 248, 485, 508, 791, 979, 1002
HincII GTYRAC 2 cut(s) 541, 1062
HindII GTYRAC 2 cut(s) 541, 1062
HindIII AAGCTT 1 cut(s) 125
HinfI GANTC 4 cut(s) 452, 545, 617, 929
HpaI GTTAAC 1 cut(s) 1062
HpaII CCGG 4 cut(s) 56, 573, 660, 801
HphI GGTGA 2 cut(s) 45, 482
Hpy166II GTNNAC 2 cut(s) 541, 1062
Hpy188I TCNGA 7 cut(s) 439, 673, 752, 784, 964, 1032, 1075
Hpy188III TCNNGA 4 cut(s) 322, 482, 597, 976
Hpy8I GTNNAC 2 cut(s) 541, 1062
Hpy99I CGWCG 2 cut(s) 104, 1069
HpyAV CCTTC 2 cut(s) 622, 1001
HpyCH4IV ACGT 1 cut(s) 1064
HpyCH4V TGCA 8 cut(s) 131, 139, 159, 278, 605, 842, 887, 1091
HpyF10VI GCNNNNNNNGC 6 cut(s) 105, 275, 352, 472, 608, 801
HpyF3I CTNAG 2 cut(s) 213, 436
HpySE526I ACGT 1 cut(s) 1064
Hsp92I GRCGYC 2 cut(s) 7, 99
Hsp92II CATG 6 cut(s) 248, 485, 508, 791, 979, 1002
KspAI GTTAAC 1 cut(s) 1062
Kzo9I GATC 1 cut(s) 1078
LguI GCTCTTC 1 cut(s) 80
LmnI GCTCC 1 cut(s) 111
Lsp1109I GCAGC 5 cut(s) 290, 589, 595, 617, 1024
LweI GCATC 1 cut(s) 496
MaeI CTAG 5 cut(s) 90, 470, 567, 645, 684
MaeII ACGT 1 cut(s) 1064
MaeIII GTNAC 2 cut(s) 51, 679
MalI GATC 1 cut(s) 1080
MboI GATC 1 cut(s) 1078
MfeI CAATTG 1 cut(s) 284
MflI RGATCY 1 cut(s) 1078
MhlI GDGCHC 3 cut(s) 116, 271, 437
MlyI GAGTC 3 cut(s) 461, 611, 938
MmeI TCCRAC 2 cut(s) 551, 807
MnlI CCTC 8 cut(s) 177, 194, 217, 239, 686, 733, 736, 958
MroXI GAANNNNTTC 2 cut(s) 74, 796
MseI TTAA 3 cut(s) 35, 194, 1061
MslI CAYNNNNRTG 1 cut(s) 997
MspA1I CMGCKG 1 cut(s) 608
MspI CCGG 4 cut(s) 56, 573, 660, 801
MspR9I CCNGG 2 cut(s) 291, 661
MunI CAATTG 1 cut(s) 284
MvaI CCWGG 1 cut(s) 291
MwoI GCNNNNNNNGC 6 cut(s) 105, 275, 352, 472, 608, 801
NciI CCSGG 1 cut(s) 661
NcoI CCATGG 2 cut(s) 504, 787
NdeI CATATG 1 cut(s) 852
NdeII GATC 1 cut(s) 1078
NlaIII CATG 6 cut(s) 248, 485, 508, 791, 979, 1002
NmuCI GTSAC 1 cut(s) 51
PagI TCATGA 2 cut(s) 481, 975
PceI AGGCCT 1 cut(s) 187
PciSI GCTCTTC 1 cut(s) 80
PdmI GAANNNNTTC 2 cut(s) 74, 796
PfeI GAWTC 1 cut(s) 545
PkrI GCNGC 5 cut(s) 280, 604, 607, 610, 1014
PleI GAGTC 3 cut(s) 460, 611, 937
PpsI GAGTC 3 cut(s) 460, 611, 937
PpuMI RGGWCCY 1 cut(s) 226
Psp124BI GAGCTC 1 cut(s) 116
Psp5II RGGWCCY 1 cut(s) 226
Psp6I CCWGG 1 cut(s) 289
PspEI GGTNACC 1 cut(s) 51
PspGI CCWGG 1 cut(s) 289
PspPI GGNCC 3 cut(s) 226, 524, 953
PspPPI RGGWCCY 1 cut(s) 226
PstI CTGCAG 2 cut(s) 607, 844
PsuI RGATCY 1 cut(s) 1078
PvuII CAGCTG 1 cut(s) 608
RsaI GTAC 6 cut(s) 565, 571, 583, 665, 688, 892
RsaNI GTAC 6 cut(s) 564, 570, 582, 664, 687, 891
RseI CAYNNNNRTG 1 cut(s) 997
SacI GAGCTC 1 cut(s) 116
SapI GCTCTTC 1 cut(s) 80
SaqAI TTAA 3 cut(s) 35, 194, 1061
SatI GCNGC 5 cut(s) 279, 603, 606, 609, 1013
Sau3AI GATC 1 cut(s) 1078
Sau96I GGNCC 3 cut(s) 226, 524, 953
ScaI AGTACT 2 cut(s) 583, 688
SchI GAGTC 3 cut(s) 461, 611, 938
ScrFI CCNGG 2 cut(s) 291, 661
SduI GDGCHC 3 cut(s) 116, 271, 437
SfaNI GCATC 1 cut(s) 496
SfcI CTRYAG 2 cut(s) 603, 840
SinI GGWCC 2 cut(s) 226, 524
SmiMI CAYNNNNRTG 1 cut(s) 997
SmlI CTYRAG 1 cut(s) 181
SmoI CTYRAG 1 cut(s) 181
SpeI ACTAGT 4 cut(s) 469, 566, 644, 683
SseBI AGGCCT 1 cut(s) 187
SsiI CCGC 1 cut(s) 701
SspMI CTAG 5 cut(s) 90, 470, 567, 645, 684
SstI GAGCTC 1 cut(s) 116
StuI AGGCCT 1 cut(s) 187
StyD4I CCNGG 2 cut(s) 289, 659
StyI CCWWGG 2 cut(s) 504, 787
TaiI ACGT 1 cut(s) 1067
TaqI TCGA 3 cut(s) 548, 615, 633
TatI WGTACW 2 cut(s) 581, 686
TfiI GAWTC 1 cut(s) 545
Tru1I TTAA 3 cut(s) 35, 194, 1061
Tru9I TTAA 3 cut(s) 35, 194, 1061
TseFI GTSAC 1 cut(s) 51
TseI GCWGC 5 cut(s) 278, 602, 605, 608, 1012
Tsp45I GTSAC 1 cut(s) 51
TspGWI ACGGA 1 cut(s) 1047
VpaK11BI GGWCC 2 cut(s) 226, 524
XapI RAATTY 4 cut(s) 325, 712, 778, 1033
XcmI CCANNNNNNNNNTGG 1 cut(s) 251
XmnI GAANNNNTTC 2 cut(s) 74, 796
XspI CTAG 5 cut(s) 90, 470, 567, 645, 684
ZrmI AGTACT 2 cut(s) 583, 688
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.