Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0011469

Physical Location & Seq

Genomic Coordinates Reverse (-)

9717887 .. 9719217

Gene Structure 1331 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG131000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGGACGCCATTCGTGTTGTTTGAAGCAAAAGTTAAGGAAAGGTCTCTGGTCACCGGAAGAAGACGAGAAGCTCTTCAATTACATCACTAGATTTGGCGTCGGTTGCTGGAGCTCTGTCCCCAAGCTTGCAGGGTTGCAAAGATGTGGTAAGAGTTGCAGGTTGAGATGGATAAACTACTTGAGGCCTGATTTAAAGAGAGGAATGTTCTCTCAGCAAGAAGAGGACCTCATTATTAGTCTCCATGAAGTTCTTGGGAACAGGTGGGCTCAAATTGCAGCACAATTGCCAGGAAGAACAGATAATGAGATAAAGAACTTCTGGAATTCGTGTTTGAAGAAGAAGCTAATGAAGCAAGGGATTGACCCGACCACTCACAAGCCACTAACAGATGAAGAACTACTCAAAGACGATAAGACGAATATAGTCAAGTGCTCAGAATTGAATAACGAGTCTTCATCCTTGCCACTAGTGCCAGCTCATGAGCATCACCACGAACTTCCCATGGCTAATTCATCACAAGGTCCAACATTTCTTGTCAACGATTCGAGTTATTTTGATGGTACTAGTACCGGAATAAGTACTACACAAACTTCCAGAGCTGCAGCTGCCTTCGACTCTCTATCCTATTTCGAATTCCAAACTAGTATCGATCCATCCGGGTACAATTCTGACCTCGTTACTCAGTATCATCCGCCTACTACAAATTCCATTAGACCCTCTTTCAATTATGAAGCAATTATCGGATACAATTCTATGCCAAGTTTGGCGAATTCGGACCATGGAAGCATGTCCGGCACAGACTTCTCCTTTAGTTCAAGCAATAGCTCAACTGCAGGTTTCCATATGAACCACAACAACAATGTAGTGGAAAATAATGCAGGTACTTTTTCTTGGGATATAAACACAGAGAACAAATTAGAGTCCTTGTTTCATCAATTTGATGGCCCGAAATCAGAGGAACTGGTCATGATGAAGCCCAATTCATCATCATGGGAAGAAGGGCAGCTTCATCATCAACATCAGAATTCAGTAGATTTCAGTAGCTATCCGTTAACGTCGCTATCAGAAGATCTAACAGGTGCAAACTTTGATGTCTTCCAGCATATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

370

Amino Acids

41.6

Weight (kDa)

5.71

Isoelectric Point (pI)

47.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	1.2e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 76	1.4e-11	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 112	1e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	70 - 120	1.5e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011469)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01680 AT4G01680 AT4G01680
fragaria_vesca	FvH4_5g06070
malus_domestica	MD06G1167200.v1.1 MD14G1172900.v1.1
prunus_persica	Prupe.5G167100_v2.0.a1 Prupe.5G167100_v2.0.a1 Prupe.5G167100_v2.0.a1
pyrus_communis	pycom06g14990 pycom14g14420
rosa_chinensis	RchiOBHm_Chr7g0192781
rosa_laevigata	RLG00000004329
rosa_multiflora	Rmu_sc0002040.1_g000020
rosa_roxburghii	Rroxscaffold_3G00262690
rosa_rugosa	Rorug07G0004600
rosa_samantha	Rh7AG129700 Rh7BG131000 Rh7DG131900
rosa_wichuraiana	Rw7G011100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	150, 827, 872
AciI	CCGC	1 cut(s)	695
AclWI	GGATC	1 cut(s)	647
AcsI	RAATTY	5 cut(s)	325, 635, 706, 772, 1027
AcyI	GRCGYC	2 cut(s)	7, 99
AfaI	GTAC	5 cut(s)	565, 571, 583, 665, 886
AgsI	TTSAA	6 cut(s)	25, 79, 337, 445, 727, 819
AhlI	ACTAGT	3 cut(s)	469, 566, 644
AjnI	CCWGG	1 cut(s)	289
Alw21I	GWGCWC	2 cut(s)	116, 437
Alw26I	GTCTC	2 cut(s)	50, 245
AlwI	GGATC	1 cut(s)	647
AoxI	GGCC	2 cut(s)	185, 946
ApeKI	GCWGC	5 cut(s)	278, 602, 605, 608, 1006
ApoI	RAATTY	5 cut(s)	325, 635, 706, 772, 1027
Asp700I	GAANNNNTTC	1 cut(s)	74
AspS9I	GGNCC	4 cut(s)	226, 524, 778, 947
AsuC2I	CCSGG	1 cut(s)	661
AsuHPI	GGTGA	2 cut(s)	45, 482
AsuII	TTCGAA	1 cut(s)	633
AvaII	GGWCC	3 cut(s)	226, 524, 778
BanII	GRGCYC	2 cut(s)	116, 271
BbsI	GAAGAC	3 cut(s)	69, 447, 1090
Bbv12I	GWGCWC	2 cut(s)	116, 437
BbvI	GCAGC	5 cut(s)	290, 589, 595, 617, 1018
BccI	CCATC	4 cut(s)	162, 554, 664, 938
BciT130I	CCWGG	1 cut(s)	291
BciVI	GTATCC	1 cut(s)	740
BcnI	CCSGG	1 cut(s)	661
BcoDI	GTCTC	2 cut(s)	50, 245
BcuI	ACTAGT	3 cut(s)	469, 566, 644
BfaI	CTAG	4 cut(s)	90, 470, 567, 645
BfmI	CTRYAG	2 cut(s)	603, 834
BfuAI	ACCTGC	3 cut(s)	150, 827, 872
BfuI	GTATCC	1 cut(s)	740
BglII	AGATCT	1 cut(s)	1072
BisI	GCNGC	5 cut(s)	279, 603, 606, 609, 1007
BlsI	GCNGC	5 cut(s)	280, 604, 607, 610, 1008
BmcAI	AGTACT	1 cut(s)	583
Bme1390I	CCNGG	2 cut(s)	291, 661
Bme18I	GGWCC	3 cut(s)	226, 524, 778
BmgT120I	GGNCC	4 cut(s)	226, 524, 778, 947
BmrFI	CCNGG	2 cut(s)	291, 661
BmsI	GCATC	1 cut(s)	496
BpiI	GAAGAC	3 cut(s)	69, 447, 1090
BpmI	CTGGAG	1 cut(s)	130
Bpu14I	TTCGAA	1 cut(s)	633
BpuEI	CTTGAG	1 cut(s)	202
BpuMI	CCSGG	1 cut(s)	661
Bsa29I	ATCGAT	1 cut(s)	651
BsaHI	GRCGYC	2 cut(s)	7, 99
BsaI	GGTCTC	1 cut(s)	50
BsaJI	CCNNGG	2 cut(s)	504, 781
BsaWI	WCCGGW	2 cut(s)	55, 572
Bse1I	ACTGG	1 cut(s)	969
BseBI	CCWGG	1 cut(s)	291
BseCI	ATCGAT	1 cut(s)	651
BseDI	CCNNGG	2 cut(s)	504, 781
BseGI	GGATG	3 cut(s)	458, 656, 691
BseMII	CTCAG	3 cut(s)	227, 450, 698
BseNI	ACTGG	1 cut(s)	969
BseXI	GCAGC	5 cut(s)	290, 589, 595, 617, 1018
BshFI	GGCC	2 cut(s)	187, 948
BshVI	ATCGAT	1 cut(s)	651
BsiHKAI	GWGCWC	2 cut(s)	116, 437
BsiSI	CCGG	4 cut(s)	56, 573, 660, 795
BslFI	GGGAC	2 cut(s)	18, 104
BsmAI	GTCTC	2 cut(s)	50, 245
BsmFI	GGGAC	2 cut(s)	18, 104
BsnI	GGCC	2 cut(s)	187, 948
Bso31I	GGTCTC	1 cut(s)	50
Bsp119I	TTCGAA	1 cut(s)	633
Bsp1286I	GDGCHC	3 cut(s)	116, 271, 437
Bsp143I	GATC	2 cut(s)	652, 1072
Bsp19I	CCATGG	2 cut(s)	504, 781
BspACI	CCGC	1 cut(s)	695
BspANI	GGCC	2 cut(s)	187, 948
BspCNI	CTCAG	3 cut(s)	226, 449, 697
BspDI	ATCGAT	1 cut(s)	651
BspHI	TCATGA	2 cut(s)	481, 969
BspMAI	CTGCAG	2 cut(s)	607, 838
BspMI	ACCTGC	3 cut(s)	150, 827, 872
BspPI	GGATC	1 cut(s)	647
BspQI	GCTCTTC	1 cut(s)	80
BspT104I	TTCGAA	1 cut(s)	633
BspTNI	GGTCTC	1 cut(s)	50
BsrI	ACTGG	1 cut(s)	969
BssECI	CCNNGG	2 cut(s)	504, 781
BssMI	GATC	2 cut(s)	652, 1072
BssNI	GRCGYC	2 cut(s)	7, 99
BssT1I	CCWWGG	2 cut(s)	504, 781
Bst2UI	CCWGG	1 cut(s)	291
Bst6I	CTCTTC	2 cut(s)	80, 216
BstACI	GRCGYC	2 cut(s)	7, 99
BstBI	TTCGAA	1 cut(s)	633
BstC8I	GCNNGC	2 cut(s)	129, 477
BstDEI	CTNAG	3 cut(s)	213, 436, 684
BstDSI	CCRYGG	2 cut(s)	504, 781
BstEII	GGTNACC	1 cut(s)	51
BstF5I	GGATG	3 cut(s)	458, 656, 691
BstKTI	GATC	2 cut(s)	655, 1075
BstMAI	GTCTC	2 cut(s)	50, 245
BstMBI	GATC	2 cut(s)	652, 1072
BstMWI	GCNNNNNNNGC	6 cut(s)	105, 275, 352, 472, 608, 795
BstNI	CCWGG	1 cut(s)	291
BstNSI	RCATGY	1 cut(s)	793
BstPI	GGTNACC	1 cut(s)	51
BstSCI	CCNGG	2 cut(s)	289, 659
BstSFI	CTRYAG	2 cut(s)	603, 834
BstV1I	GCAGC	5 cut(s)	290, 589, 595, 617, 1018
BstV2I	GAAGAC	3 cut(s)	69, 447, 1090
BstX2I	RGATCY	1 cut(s)	1072
BstYI	RGATCY	1 cut(s)	1072
Bsu15I	ATCGAT	1 cut(s)	651
BsuI	GTATCC	1 cut(s)	740
BsuRI	GGCC	2 cut(s)	187, 948
BsuTUI	ATCGAT	1 cut(s)	651
BtgI	CCRYGG	2 cut(s)	504, 781
BtsCI	GGATG	3 cut(s)	458, 656, 691
BveI	ACCTGC	3 cut(s)	150, 827, 872
Cac8I	GCNNGC	2 cut(s)	129, 477
CciI	TCATGA	2 cut(s)	481, 969
Cfr13I	GGNCC	4 cut(s)	226, 524, 778, 947
ClaI	ATCGAT	1 cut(s)	651
CseI	GACGC	2 cut(s)	15, 88
Csp6I	GTAC	5 cut(s)	564, 570, 582, 664, 885
CviAII	CATG	7 cut(s)	245, 482, 505, 782, 790, 970, 993
CviQI	GTAC	5 cut(s)	564, 570, 582, 664, 885
DdeI	CTNAG	3 cut(s)	213, 436, 684
DpnI	GATC	2 cut(s)	654, 1074
DpnII	GATC	2 cut(s)	652, 1072
DraI	TTTAAA	1 cut(s)	195
Eam1104I	CTCTTC	2 cut(s)	80, 216
EarI	CTCTTC	2 cut(s)	80, 216
EciI	GGCGGA	1 cut(s)	684
Ecl136II	GAGCTC	1 cut(s)	114
Eco130I	CCWWGG	2 cut(s)	504, 781
Eco147I	AGGCCT	1 cut(s)	187
Eco24I	GRGCYC	2 cut(s)	116, 271
Eco31I	GGTCTC	1 cut(s)	50
Eco47I	GGWCC	3 cut(s)	226, 524, 778
Eco53kI	GAGCTC	1 cut(s)	114
Eco91I	GGTNACC	1 cut(s)	51
EcoICRI	GAGCTC	1 cut(s)	114
EcoO109I	RGGNCCY	1 cut(s)	226
EcoO65I	GGTNACC	1 cut(s)	51
EcoRI	GAATTC	4 cut(s)	325, 635, 772, 1027
EcoRII	CCWGG	1 cut(s)	289
EcoT14I	CCWWGG	2 cut(s)	504, 781
EcoT38I	GRGCYC	2 cut(s)	116, 271
ErhI	CCWWGG	2 cut(s)	504, 781
FaeI	CATG	7 cut(s)	248, 485, 508, 785, 793, 973, 996
FalI	AAGNNNNNCTT	2 cut(s)	993, 1025
FaqI	GGGAC	2 cut(s)	18, 104
FatI	CATG	7 cut(s)	244, 481, 504, 781, 789, 969, 992
FauNDI	CATATG	1 cut(s)	846
Fnu4HI	GCNGC	5 cut(s)	279, 603, 606, 609, 1007
FokI	GGATG	3 cut(s)	445, 643, 678
FriOI	GRGCYC	2 cut(s)	116, 271
Fsp4HI	GCNGC	5 cut(s)	279, 603, 606, 609, 1007
FspBI	CTAG	4 cut(s)	90, 470, 567, 645
GluI	GCNGC	5 cut(s)	279, 603, 606, 609, 1007
GsuI	CTGGAG	1 cut(s)	130
HaeIII	GGCC	2 cut(s)	187, 948
HapII	CCGG	4 cut(s)	56, 573, 660, 795
HgaI	GACGC	2 cut(s)	15, 88
Hin1I	GRCGYC	2 cut(s)	7, 99
Hin1II	CATG	7 cut(s)	248, 485, 508, 785, 793, 973, 996
HincII	GTYRAC	2 cut(s)	541, 1056
HindII	GTYRAC	2 cut(s)	541, 1056
HindIII	AAGCTT	1 cut(s)	125
HinfI	GANTC	4 cut(s)	452, 545, 617, 923
HpaI	GTTAAC	1 cut(s)	1056
HpaII	CCGG	4 cut(s)	56, 573, 660, 795
HphI	GGTGA	2 cut(s)	45, 482
Hpy166II	GTNNAC	2 cut(s)	541, 1056
Hpy188I	TCNGA	7 cut(s)	439, 673, 746, 778, 958, 1026, 1069
Hpy188III	TCNNGA	4 cut(s)	322, 482, 597, 970
Hpy8I	GTNNAC	2 cut(s)	541, 1056
Hpy99I	CGWCG	2 cut(s)	104, 1063
HpyAV	CCTTC	2 cut(s)	622, 995
HpyCH4IV	ACGT	1 cut(s)	1058
HpyCH4V	TGCA	8 cut(s)	131, 139, 159, 278, 605, 836, 881, 1085
HpyF10VI	GCNNNNNNNGC	6 cut(s)	105, 275, 352, 472, 608, 795
HpyF3I	CTNAG	3 cut(s)	213, 436, 684
HpySE526I	ACGT	1 cut(s)	1058
Hsp92I	GRCGYC	2 cut(s)	7, 99
Hsp92II	CATG	7 cut(s)	248, 485, 508, 785, 793, 973, 996
KspAI	GTTAAC	1 cut(s)	1056
Kzo9I	GATC	2 cut(s)	652, 1072
LguI	GCTCTTC	1 cut(s)	80
LmnI	GCTCC	1 cut(s)	111
Lsp1109I	GCAGC	5 cut(s)	290, 589, 595, 617, 1018
LweI	GCATC	1 cut(s)	496
MaeI	CTAG	4 cut(s)	90, 470, 567, 645
MaeII	ACGT	1 cut(s)	1058
MaeIII	GTNAC	2 cut(s)	51, 679
MalI	GATC	2 cut(s)	654, 1074
MboI	GATC	2 cut(s)	652, 1072
MfeI	CAATTG	1 cut(s)	284
MflI	RGATCY	1 cut(s)	1072
MhlI	GDGCHC	3 cut(s)	116, 271, 437
MlyI	GAGTC	3 cut(s)	461, 611, 932
MmeI	TCCRAC	1 cut(s)	551
MnlI	CCTC	7 cut(s)	177, 194, 217, 239, 686, 730, 952
MroXI	GAANNNNTTC	1 cut(s)	74
MseI	TTAA	3 cut(s)	35, 194, 1055
MslI	CAYNNNNRTG	1 cut(s)	991
MspA1I	CMGCKG	1 cut(s)	608
MspI	CCGG	4 cut(s)	56, 573, 660, 795
MspR9I	CCNGG	2 cut(s)	291, 661
MunI	CAATTG	1 cut(s)	284
MvaI	CCWGG	1 cut(s)	291
MwoI	GCNNNNNNNGC	6 cut(s)	105, 275, 352, 472, 608, 795
NciI	CCSGG	1 cut(s)	661
NcoI	CCATGG	2 cut(s)	504, 781
NdeI	CATATG	1 cut(s)	846
NdeII	GATC	2 cut(s)	652, 1072
NlaIII	CATG	7 cut(s)	248, 485, 508, 785, 793, 973, 996
NmuCI	GTSAC	1 cut(s)	51
NspI	RCATGY	1 cut(s)	793
NspV	TTCGAA	1 cut(s)	633
PagI	TCATGA	2 cut(s)	481, 969
PceI	AGGCCT	1 cut(s)	187
PciSI	GCTCTTC	1 cut(s)	80
PdmI	GAANNNNTTC	1 cut(s)	74
PfeI	GAWTC	1 cut(s)	545
PkrI	GCNGC	5 cut(s)	280, 604, 607, 610, 1008
PleI	GAGTC	3 cut(s)	460, 611, 931
PpsI	GAGTC	3 cut(s)	460, 611, 931
PpuMI	RGGWCCY	1 cut(s)	226
Psp124BI	GAGCTC	1 cut(s)	116
Psp5II	RGGWCCY	1 cut(s)	226
Psp6I	CCWGG	1 cut(s)	289
PspEI	GGTNACC	1 cut(s)	51
PspGI	CCWGG	1 cut(s)	289
PspPI	GGNCC	4 cut(s)	226, 524, 778, 947
PspPPI	RGGWCCY	1 cut(s)	226
PstI	CTGCAG	2 cut(s)	607, 838
PsuI	RGATCY	1 cut(s)	1072
PvuII	CAGCTG	1 cut(s)	608
RsaI	GTAC	5 cut(s)	565, 571, 583, 665, 886
RsaNI	GTAC	5 cut(s)	564, 570, 582, 664, 885
RseI	CAYNNNNRTG	1 cut(s)	991
SacI	GAGCTC	1 cut(s)	116
SapI	GCTCTTC	1 cut(s)	80
SaqAI	TTAA	3 cut(s)	35, 194, 1055
SatI	GCNGC	5 cut(s)	279, 603, 606, 609, 1007
Sau3AI	GATC	2 cut(s)	652, 1072
Sau96I	GGNCC	4 cut(s)	226, 524, 778, 947
ScaI	AGTACT	1 cut(s)	583
SchI	GAGTC	3 cut(s)	461, 611, 932
ScrFI	CCNGG	2 cut(s)	291, 661
SduI	GDGCHC	3 cut(s)	116, 271, 437
SfaNI	GCATC	1 cut(s)	496
SfcI	CTRYAG	2 cut(s)	603, 834
SfuI	TTCGAA	1 cut(s)	633
SinI	GGWCC	3 cut(s)	226, 524, 778
SmiMI	CAYNNNNRTG	1 cut(s)	991
SmlI	CTYRAG	1 cut(s)	181
SmoI	CTYRAG	1 cut(s)	181
SpeI	ACTAGT	3 cut(s)	469, 566, 644
SseBI	AGGCCT	1 cut(s)	187
SsiI	CCGC	1 cut(s)	695
SspMI	CTAG	4 cut(s)	90, 470, 567, 645
SstI	GAGCTC	1 cut(s)	116
StuI	AGGCCT	1 cut(s)	187
StyD4I	CCNGG	2 cut(s)	289, 659
StyI	CCWWGG	2 cut(s)	504, 781
TaiI	ACGT	1 cut(s)	1061
TaqI	TCGA	4 cut(s)	548, 615, 633, 651
TatI	WGTACW	1 cut(s)	581
TfiI	GAWTC	1 cut(s)	545
Tru1I	TTAA	3 cut(s)	35, 194, 1055
Tru9I	TTAA	3 cut(s)	35, 194, 1055
TseFI	GTSAC	1 cut(s)	51
TseI	GCWGC	5 cut(s)	278, 602, 605, 608, 1006
Tsp45I	GTSAC	1 cut(s)	51
TspGWI	ACGGA	1 cut(s)	1041
VpaK11BI	GGWCC	3 cut(s)	226, 524, 778
XapI	RAATTY	5 cut(s)	325, 635, 706, 772, 1027
XceI	RCATGY	1 cut(s)	793
XcmI	CCANNNNNNNNNTGG	1 cut(s)	251
XmnI	GAANNNNTTC	1 cut(s)	74
XspI	CTAG	4 cut(s)	90, 470, 567, 645
ZrmI	AGTACT	1 cut(s)	583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.