MD14G1172900.v1.1
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0011469
Physical Location & Seq
Reverse (-)
26670170 .. 26671788
1619 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1172900.v1.1.491

Sequence Viewer

Length: 1113 bp
ATGGGACGCAATTCGTGTTGTTTGAAGCAGAAGTTAAGGAAAGGCCTCTGGTCACCAGAAGAAGATGAGAAGCTCTTCAACTACATCACTCAATTTGGTGTTGGCTGCTGGAGCTCGGTCCCAAAGCTTGCTGGTTTGCAGAGGTGTGGGAAGAGTTGCAGGTTGAGATGGATAAACTATTTAAGGCCTGATTTGAAGAGAGGAATGTTCTCACAACAGGAAGAGGATCTCATTCTTAGTCTTCACGAAGTTATAGGCAACCGGTGGGCTCAAATTGCAGCACAATTGCCAGGAAGAACAGACAATGAGATAAAGAACTTTTGGAATTCATGTTTGAAGAAGAAGCTAATGAAGCAAGGAATTGACCCAACTACTCACAAGCCACTAACTGAACAAGAGCTGAAAGAAACGAAGAACATTGATTGTTCAGACCTAAATGAGTCTTTGCCAATGCCAGAGCTTCCAACTATGCCAATAACCATGGCTTCCCAAGGCCCAACATTTCTTCTCAATGATTCAAATTACTACGATGGAAACGGAGGAGTCCTCAACAATCCACAAGCCTCAAGAGCCTTTGATTCTCTATCTTATTTCGAGTTCCAACCCCGTTTTGAGTCATCAGCCTACAATTCAGATCTTGTTGCCGCTCAATACCACCATACCAACATTAGACCTTATGAGTCAAGCTCAAATTTTGGGTTTACTTCAATGCCAAGTTTGGCAAATTCGGACCATGGAAGCATGTCCGGCACAGATTTTTCGGACAATTCAGCTTCAAGGCTCGGCTCATTTTTCATGAATGAGGTTAAGGAAAGCTCGAGCAATAGCTCGAACGTCGGCAGCTATACAGCAGGGTGTCAAATGAGCAGCAACAACGTAGTTGAAAATGCGGCTTTTCCATGGGAAACAGATAACAAACTAGACTCCTTGTTTCAGTTTCATTTCAATGGGATAAAGTCTGAGGAAATTATCAAACCCAATAGTTCTTGGCAACAACAAGGGCAGCTTGTTCATCACCATGCTCAAAATTCAGTAGATTTCAGTAGCTATCCGTTAACGTCGTTGTCAGAAGATCTAACTGGTGCAAATTTTGATGTTTTCCAGAATATTTGA

Protein Analysis

371

Amino Acids

41.62

Weight (kDa)

5.52

Isoelectric Point (pI)

53.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 5.7e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 76 5.8e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 112 6.2e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 70 - 120 3.4e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01680 AT4G01680 AT4G01680
fragaria_vesca FvH4_5g06070
malus_domestica MD06G1167200.v1.1 MD14G1172900.v1.1
prunus_persica Prupe.5G167100_v2.0.a1 Prupe.5G167100_v2.0.a1 Prupe.5G167100_v2.0.a1
pyrus_communis pycom06g14990 pycom14g14420
rosa_chinensis RchiOBHm_Chr7g0192781
rosa_laevigata RLG00000004329
rosa_multiflora Rmu_sc0002040.1_g000020
rosa_roxburghii Rroxscaffold_3G00262690
rosa_rugosa Rorug07G0004600
rosa_samantha Rh7AG129700 Rh7BG131000 Rh7DG131900
rosa_wichuraiana Rw7G011100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 150
AccBSI CCGCTC 1 cut(s) 647
AciI CCGC 2 cut(s) 645, 890
AclWI GGATC 1 cut(s) 234
AcsI RAATTY 5 cut(s) 325, 691, 724, 1027, 1087
AgeI ACCGGT 1 cut(s) 261
AgsI TTSAA 9 cut(s) 25, 79, 196, 337, 519, 708, 777, 884, 946
AjnI CCWGG 1 cut(s) 289
Alw21I GWGCWC 1 cut(s) 116
AlwI GGATC 1 cut(s) 234
Ama87I CYCGRG 1 cut(s) 817
AoxI GGCC 3 cut(s) 43, 185, 493
ApeKI GCWGC 5 cut(s) 105, 278, 840, 867, 1003
ApoI RAATTY 5 cut(s) 325, 691, 724, 1027, 1087
AsiGI ACCGGT 1 cut(s) 261
Asp700I GAANNNNTTC 1 cut(s) 74
AspS9I GGNCC 3 cut(s) 118, 494, 730
AsuHPI GGTGA 2 cut(s) 45, 1007
AvaI CYCGRG 1 cut(s) 817
AvaII GGWCC 2 cut(s) 118, 730
BanII GRGCYC 2 cut(s) 116, 271
BbsI GAAGAC 1 cut(s) 233
Bbv12I GWGCWC 1 cut(s) 116
BbvI GCAGC 5 cut(s) 92, 290, 852, 879, 1015
BccI CCATC 2 cut(s) 162, 524
BciT130I CCWGG 1 cut(s) 291
BfaI CTAG 1 cut(s) 920
BfuAI ACCTGC 1 cut(s) 150
BglII AGATCT 2 cut(s) 634, 1072
BisI GCNGC 7 cut(s) 106, 279, 645, 841, 868, 891, 1004
BlsI GCNGC 7 cut(s) 107, 280, 646, 842, 869, 892, 1005
Bme1390I CCNGG 1 cut(s) 291
Bme18I GGWCC 2 cut(s) 118, 730
BmeT110I CYCGRG 1 cut(s) 817
BmgT120I GGNCC 3 cut(s) 118, 494, 730
BmiI GGNNCC 1 cut(s) 120
BmrFI CCNGG 1 cut(s) 291
BpiI GAAGAC 1 cut(s) 233
BplI GAGNNNNNCTC 4 cut(s) 531, 563, 671, 703
BpmI CTGGAG 1 cut(s) 130
BpuEI CTTGAG 1 cut(s) 550
BsaJI CCNNGG 4 cut(s) 480, 490, 733, 899
BsaWI WCCGGW 1 cut(s) 261
Bse118I RCCGGY 1 cut(s) 261
Bse1I ACTGG 1 cut(s) 1084
BseBI CCWGG 1 cut(s) 291
BseDI CCNNGG 4 cut(s) 480, 490, 733, 899
BseMII CTCAG 1 cut(s) 951
BseNI ACTGG 1 cut(s) 1084
BseRI GAGGAG 1 cut(s) 555
BseXI GCAGC 5 cut(s) 92, 290, 852, 879, 1015
BshFI GGCC 3 cut(s) 45, 187, 495
BshTI ACCGGT 1 cut(s) 261
BsiHKAI GWGCWC 1 cut(s) 116
BsiHKCI CYCGRG 1 cut(s) 817
BsiSI CCGG 2 cut(s) 262, 747
BslFI GGGAC 2 cut(s) 18, 104
BsmFI GGGAC 2 cut(s) 18, 104
BsnI GGCC 3 cut(s) 45, 187, 495
BsoBI CYCGRG 1 cut(s) 817
Bsp1286I GDGCHC 2 cut(s) 116, 271
Bsp143I GATC 3 cut(s) 226, 634, 1072
Bsp19I CCATGG 3 cut(s) 480, 733, 899
BspACI CCGC 2 cut(s) 645, 890
BspANI GGCC 3 cut(s) 45, 187, 495
BspCNI CTCAG 1 cut(s) 952
BspHI TCATGA 1 cut(s) 795
BspLI GGNNCC 1 cut(s) 120
BspMI ACCTGC 1 cut(s) 150
BspPI GGATC 1 cut(s) 234
BspQI GCTCTTC 1 cut(s) 80
BsrBI CCGCTC 1 cut(s) 647
BsrFI RCCGGY 1 cut(s) 261
BsrI ACTGG 1 cut(s) 1084
BssAI RCCGGY 1 cut(s) 261
BssECI CCNNGG 4 cut(s) 480, 490, 733, 899
BssMI GATC 3 cut(s) 226, 634, 1072
BssT1I CCWWGG 4 cut(s) 480, 490, 733, 899
Bst2UI CCWGG 1 cut(s) 291
Bst6I CTCTTC 4 cut(s) 80, 146, 191, 216
BstC8I GCNNGC 1 cut(s) 129
BstDEI CTNAG 2 cut(s) 236, 960
BstDSI CCRYGG 3 cut(s) 480, 733, 899
BstEII GGTNACC 1 cut(s) 51
BstKTI GATC 3 cut(s) 229, 637, 1075
BstMBI GATC 3 cut(s) 226, 634, 1072
BstMWI GCNNNNNNNGC 5 cut(s) 111, 275, 352, 569, 747
BstNI CCWGG 1 cut(s) 291
BstNSI RCATGY 1 cut(s) 745
BstPI GGTNACC 1 cut(s) 51
BstSCI CCNGG 1 cut(s) 289
BstV1I GCAGC 5 cut(s) 92, 290, 852, 879, 1015
BstV2I GAAGAC 1 cut(s) 233
BstX2I RGATCY 3 cut(s) 226, 634, 1072
BstYI RGATCY 3 cut(s) 226, 634, 1072
BsuRI GGCC 3 cut(s) 45, 187, 495
BtgI CCRYGG 3 cut(s) 480, 733, 899
BveI ACCTGC 1 cut(s) 150
Cac8I GCNNGC 1 cut(s) 129
CciI TCATGA 1 cut(s) 795
Cfr10I RCCGGY 1 cut(s) 261
Cfr13I GGNCC 3 cut(s) 118, 494, 730
CseI GACGC 1 cut(s) 15
CspAI ACCGGT 1 cut(s) 261
CviAII CATG 7 cut(s) 330, 481, 734, 742, 796, 900, 1019
DdeI CTNAG 2 cut(s) 236, 960
DpnI GATC 3 cut(s) 228, 636, 1074
DpnII GATC 3 cut(s) 226, 634, 1072
Eam1104I CTCTTC 4 cut(s) 80, 146, 191, 216
EarI CTCTTC 4 cut(s) 80, 146, 191, 216
Ecl136II GAGCTC 1 cut(s) 114
Eco130I CCWWGG 4 cut(s) 480, 490, 733, 899
Eco147I AGGCCT 2 cut(s) 45, 187
Eco24I GRGCYC 2 cut(s) 116, 271
Eco47I GGWCC 2 cut(s) 118, 730
Eco53kI GAGCTC 1 cut(s) 114
Eco88I CYCGRG 1 cut(s) 817
Eco91I GGTNACC 1 cut(s) 51
EcoICRI GAGCTC 1 cut(s) 114
EcoO65I GGTNACC 1 cut(s) 51
EcoRI GAATTC 1 cut(s) 325
EcoRII CCWGG 1 cut(s) 289
EcoT14I CCWWGG 4 cut(s) 480, 490, 733, 899
EcoT38I GRGCYC 2 cut(s) 116, 271
ErhI CCWWGG 4 cut(s) 480, 490, 733, 899
FaeI CATG 7 cut(s) 333, 484, 737, 745, 799, 903, 1022
FalI AAGNNNNNCTT 2 cut(s) 990, 1022
FaqI GGGAC 2 cut(s) 18, 104
FatI CATG 7 cut(s) 329, 480, 733, 741, 795, 899, 1018
Fnu4HI GCNGC 7 cut(s) 106, 279, 645, 841, 868, 891, 1004
FriOI GRGCYC 2 cut(s) 116, 271
Fsp4HI GCNGC 7 cut(s) 106, 279, 645, 841, 868, 891, 1004
FspBI CTAG 1 cut(s) 920
GluI GCNGC 7 cut(s) 106, 279, 645, 841, 868, 891, 1004
GsuI CTGGAG 1 cut(s) 130
HaeIII GGCC 3 cut(s) 45, 187, 495
HapII CCGG 2 cut(s) 262, 747
HgaI GACGC 1 cut(s) 15
Hin1II CATG 7 cut(s) 333, 484, 737, 745, 799, 903, 1022
HincII GTYRAC 1 cut(s) 1056
HindII GTYRAC 1 cut(s) 1056
HindIII AAGCTT 1 cut(s) 125
HinfI GANTC 7 cut(s) 440, 515, 543, 578, 614, 680, 923
HpaI GTTAAC 1 cut(s) 1056
HpaII CCGG 2 cut(s) 262, 747
HphI GGTGA 2 cut(s) 45, 1007
Hpy166II GTNNAC 2 cut(s) 702, 1056
Hpy188I TCNGA 6 cut(s) 430, 634, 730, 763, 961, 1069
Hpy188III TCNNGA 4 cut(s) 245, 567, 796, 1102
Hpy8I GTNNAC 2 cut(s) 702, 1056
Hpy99I CGWCG 2 cut(s) 839, 1063
HpyCH4IV ACGT 3 cut(s) 834, 876, 1058
HpyCH4V TGCA 4 cut(s) 139, 159, 278, 1085
HpyF10VI GCNNNNNNNGC 5 cut(s) 111, 275, 352, 569, 747
HpyF3I CTNAG 2 cut(s) 236, 960
HpySE526I ACGT 3 cut(s) 834, 876, 1058
Hsp92II CATG 7 cut(s) 333, 484, 737, 745, 799, 903, 1022
KspAI GTTAAC 1 cut(s) 1056
Kzo9I GATC 3 cut(s) 226, 634, 1072
LguI GCTCTTC 1 cut(s) 80
LmnI GCTCC 1 cut(s) 111
Lsp1109I GCAGC 5 cut(s) 92, 290, 852, 879, 1015
MaeI CTAG 1 cut(s) 920
MaeII ACGT 3 cut(s) 834, 876, 1058
MaeIII GTNAC 1 cut(s) 51
MalI GATC 3 cut(s) 228, 636, 1074
MbiI CCGCTC 1 cut(s) 647
MboI GATC 3 cut(s) 226, 634, 1072
MfeI CAATTG 1 cut(s) 284
MflI RGATCY 3 cut(s) 226, 634, 1072
MhlI GDGCHC 2 cut(s) 116, 271
MlyI GAGTC 5 cut(s) 449, 552, 623, 689, 917
MmeI TCCRAC 2 cut(s) 488, 625
MnlI CCTC 9 cut(s) 56, 135, 194, 217, 533, 557, 574, 796, 955
MroXI GAANNNNTTC 1 cut(s) 74
MseI TTAA 4 cut(s) 35, 182, 807, 1055
MslI CAYNNNNRTG 2 cut(s) 945, 1017
MspI CCGG 2 cut(s) 262, 747
MspR9I CCNGG 1 cut(s) 291
MunI CAATTG 1 cut(s) 284
MvaI CCWGG 1 cut(s) 291
MwoI GCNNNNNNNGC 5 cut(s) 111, 275, 352, 569, 747
NcoI CCATGG 3 cut(s) 480, 733, 899
NdeII GATC 3 cut(s) 226, 634, 1072
NlaIII CATG 7 cut(s) 333, 484, 737, 745, 799, 903, 1022
NlaIV GGNNCC 1 cut(s) 120
NmeAIII GCCGAG 1 cut(s) 762
NmuCI GTSAC 1 cut(s) 51
NspI RCATGY 1 cut(s) 745
PaeR7I CTCGAG 1 cut(s) 817
PagI TCATGA 1 cut(s) 795
PceI AGGCCT 2 cut(s) 45, 187
PciSI GCTCTTC 1 cut(s) 80
PdmI GAANNNNTTC 1 cut(s) 74
PfeI GAWTC 2 cut(s) 515, 578
PinAI ACCGGT 1 cut(s) 261
PkrI GCNGC 7 cut(s) 107, 280, 646, 842, 869, 892, 1005
PleI GAGTC 5 cut(s) 448, 551, 622, 688, 917
PpsI GAGTC 5 cut(s) 448, 551, 622, 688, 917
Psp124BI GAGCTC 1 cut(s) 116
Psp6I CCWGG 1 cut(s) 289
PspEI GGTNACC 1 cut(s) 51
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 1 cut(s) 120
PspPI GGNCC 3 cut(s) 118, 494, 730
PspXI VCTCGAGB 1 cut(s) 817
PsuI RGATCY 3 cut(s) 226, 634, 1072
RseI CAYNNNNRTG 2 cut(s) 945, 1017
SacI GAGCTC 1 cut(s) 116
SapI GCTCTTC 1 cut(s) 80
SaqAI TTAA 4 cut(s) 35, 182, 807, 1055
SatI GCNGC 7 cut(s) 106, 279, 645, 841, 868, 891, 1004
Sau3AI GATC 3 cut(s) 226, 634, 1072
Sau96I GGNCC 3 cut(s) 118, 494, 730
SchI GAGTC 5 cut(s) 449, 552, 623, 689, 917
ScrFI CCNGG 1 cut(s) 291
SduI GDGCHC 2 cut(s) 116, 271
Sfr274I CTCGAG 1 cut(s) 817
SinI GGWCC 2 cut(s) 118, 730
SlaI CTCGAG 1 cut(s) 817
SmiMI CAYNNNNRTG 2 cut(s) 945, 1017
SmlI CTYRAG 2 cut(s) 565, 817
SmoI CTYRAG 2 cut(s) 565, 817
SseBI AGGCCT 2 cut(s) 45, 187
SsiI CCGC 2 cut(s) 645, 890
SspI AATATT 1 cut(s) 1108
SspMI CTAG 1 cut(s) 920
SstI GAGCTC 1 cut(s) 116
StuI AGGCCT 2 cut(s) 45, 187
StyD4I CCNGG 1 cut(s) 289
StyI CCWWGG 4 cut(s) 480, 490, 733, 899
TaiI ACGT 3 cut(s) 837, 879, 1061
TaqI TCGA 3 cut(s) 594, 818, 830
TaqII GACCGA 1 cut(s) 106
TauI GCSGC 2 cut(s) 647, 893
TfiI GAWTC 2 cut(s) 515, 578
Tru1I TTAA 4 cut(s) 35, 182, 807, 1055
Tru9I TTAA 4 cut(s) 35, 182, 807, 1055
TseFI GTSAC 1 cut(s) 51
TseI GCWGC 5 cut(s) 105, 278, 840, 867, 1003
Tsp45I GTSAC 1 cut(s) 51
TspDTI ATGAA 6 cut(s) 318, 365, 784, 812, 929, 1001
TspGWI ACGGA 2 cut(s) 552, 1041
VpaK11BI GGWCC 2 cut(s) 118, 730
XapI RAATTY 5 cut(s) 325, 691, 724, 1027, 1087
XceI RCATGY 1 cut(s) 745
XhoI CTCGAG 1 cut(s) 817
XmnI GAANNNNTTC 1 cut(s) 74
XspI CTAG 1 cut(s) 920
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.