Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0011469

Physical Location & Seq

Genomic Coordinates Reverse (-)

19567550 .. 19568344

Gene Structure 795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g14990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGAAGCAAGGAATTGACCCAACTACCCACAAGCCACTAACTGAAGAAGAACTGAAAGAAAAGAAGAACATTGATTGTTCAGCCTTAAAAGAGTCTTTGCCAATGCCAGAGCTTCCAGCTATGCCAATAACCATGGCTTCCCAAGGCCCAACATTTCTTCTCAATGATTCAAATTACTATGATGGAAATGGAGGAGTCCTCAACAATCCACAAGCCTCAAGAGCCTTTGATTCTCTATCTTATTTCGAGTACCAATCTGGTTTCGAGTCCCAATCCGGTTTCGAGTCATCATCAGCCTATAATTCAGATCTTGTTGCCACTCAATACCACCATACCAACATTAGACCTTATGAGTCAAGCTCAAATTTTGGGTTTACTTCAATGCCAAGTTTGGCAAATTCGGACCACGGAAGCATGTCCGGCACAGATTTTTCGGAAAATTCAGCTTCGAGACTCAGCTCATTTTTCATGAATGAGGTTAAGGAAAGCTCGAGCAATAGCTCGAACGTCAGCAGCTATGCAGCAGGGTATCATATGACCGGCAACAACGGCAACAACGCAATCGAAAATGCTGCTTTTTCATGGGAAACAGATAACAAACTAGACTCTTTGTTTCAGTTTCATGTCAATGGGATAAAGTCTGAGGAAATGATCAAACCCACTAGTTCCTGGCAACAACAAGGGCAGCTTGTTCATCACCATGCTCAAAATTCAGTAGATTTCAGTAGTTATCCATTAACGTCGTTGTCAGAAGATCTAACAGGTGAAAATTTTGATGTTTTCCAGAATATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

265

Amino Acids

29.13

Weight (kDa)

4.63

Isoelectric Point (pI)

53.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011469)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01680 AT4G01680 AT4G01680
fragaria_vesca	FvH4_5g06070
malus_domestica	MD06G1167200.v1.1 MD14G1172900.v1.1
prunus_persica	Prupe.5G167100_v2.0.a1 Prupe.5G167100_v2.0.a1 Prupe.5G167100_v2.0.a1
pyrus_communis	pycom06g14990 pycom14g14420
rosa_chinensis	RchiOBHm_Chr7g0192781
rosa_laevigata	RLG00000004329
rosa_multiflora	Rmu_sc0002040.1_g000020
rosa_roxburghii	Rroxscaffold_3G00262690
rosa_rugosa	Rorug07G0004600
rosa_samantha	Rh7AG129700 Rh7BG131000 Rh7DG131900
rosa_wichuraiana	Rw7G011100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	5 cut(s)	364, 397, 439, 709, 769
AcuI	CTGAAG	1 cut(s)	63
AfaI	GTAC	1 cut(s)	251
AgsI	TTSAA	2 cut(s)	171, 381
AhlI	ACTAGT	1 cut(s)	662
AjnI	CCWGG	1 cut(s)	668
AluBI	AGCT	9 cut(s)	112, 119, 360, 446, 459, 489, 501, 516, 688
AluI	AGCT	9 cut(s)	112, 119, 360, 446, 459, 489, 501, 516, 688
Alw26I	GTCTC	1 cut(s)	445
Ama87I	CYCGRG	1 cut(s)	490
AoxI	GGCC	1 cut(s)	145
ApeKI	GCWGC	4 cut(s)	513, 521, 572, 685
ApoI	RAATTY	5 cut(s)	364, 397, 439, 709, 769
AspS9I	GGNCC	2 cut(s)	146, 403
AsuHPI	GGTGA	2 cut(s)	689, 776
AvaI	CYCGRG	1 cut(s)	490
AvaII	GGWCC	1 cut(s)	403
BbvI	GCAGC	4 cut(s)	525, 533, 559, 697
BccI	CCATC	1 cut(s)	176
BceAI	ACGGC	1 cut(s)	565
BcgI	CGANNNNNNTGC	2 cut(s)	554, 588
BciT130I	CCWGG	1 cut(s)	670
BclI	TGATCA	1 cut(s)	651
BcoDI	GTCTC	1 cut(s)	445
BcuI	ACTAGT	1 cut(s)	662
BfaI	CTAG	2 cut(s)	602, 663
BglII	AGATCT	2 cut(s)	307, 754
BisI	GCNGC	4 cut(s)	514, 522, 573, 686
BlsI	GCNGC	4 cut(s)	515, 523, 574, 687
Bme1390I	CCNGG	1 cut(s)	670
Bme18I	GGWCC	1 cut(s)	403
BmeT110I	CYCGRG	1 cut(s)	490
BmgT120I	GGNCC	2 cut(s)	146, 403
BmrFI	CCNGG	1 cut(s)	670
BplI	GAGNNNNNCTC	4 cut(s)	183, 215, 344, 376
BpuEI	CTTGAG	1 cut(s)	202
BsaJI	CCNNGG	3 cut(s)	132, 142, 406
BsaWI	WCCGGW	1 cut(s)	275
Bse118I	RCCGGY	1 cut(s)	539
BseBI	CCWGG	1 cut(s)	670
BseDI	CCNNGG	3 cut(s)	132, 142, 406
BseMII	CTCAG	2 cut(s)	469, 633
BseRI	GAGGAG	1 cut(s)	207
BseXI	GCAGC	4 cut(s)	525, 533, 559, 697
BshFI	GGCC	1 cut(s)	147
BsiHKCI	CYCGRG	1 cut(s)	490
BsiSI	CCGG	3 cut(s)	276, 420, 540
BslFI	GGGAC	1 cut(s)	253
BsmAI	GTCTC	1 cut(s)	445
BsmFI	GGGAC	1 cut(s)	253
BsnI	GGCC	1 cut(s)	147
BsoBI	CYCGRG	1 cut(s)	490
Bsp143I	GATC	3 cut(s)	307, 651, 754
Bsp19I	CCATGG	1 cut(s)	132
BspANI	GGCC	1 cut(s)	147
BspCNI	CTCAG	2 cut(s)	468, 634
BspHI	TCATGA	1 cut(s)	468
BsrFI	RCCGGY	1 cut(s)	539
BssAI	RCCGGY	1 cut(s)	539
BssECI	CCNNGG	3 cut(s)	132, 142, 406
BssMI	GATC	3 cut(s)	307, 651, 754
BssT1I	CCWWGG	2 cut(s)	132, 142
Bst2UI	CCWGG	1 cut(s)	670
BstDEI	CTNAG	2 cut(s)	455, 642
BstDSI	CCRYGG	2 cut(s)	132, 406
BstKTI	GATC	3 cut(s)	310, 654, 757
BstMAI	GTCTC	1 cut(s)	445
BstMBI	GATC	3 cut(s)	307, 651, 754
BstMWI	GCNNNNNNNGC	3 cut(s)	221, 420, 549
BstNI	CCWGG	1 cut(s)	670
BstNSI	RCATGY	1 cut(s)	418
BstSCI	CCNGG	1 cut(s)	668
BstV1I	GCAGC	4 cut(s)	525, 533, 559, 697
BstX2I	RGATCY	2 cut(s)	307, 754
BstYI	RGATCY	2 cut(s)	307, 754
BsuRI	GGCC	1 cut(s)	147
BtgI	CCRYGG	2 cut(s)	132, 406
CciI	TCATGA	1 cut(s)	468
Cfr10I	RCCGGY	1 cut(s)	539
Cfr13I	GGNCC	2 cut(s)	146, 403
Csp6I	GTAC	1 cut(s)	250
CviAII	CATG	6 cut(s)	133, 415, 469, 582, 623, 701
CviQI	GTAC	1 cut(s)	250
DdeI	CTNAG	2 cut(s)	455, 642
DpnI	GATC	3 cut(s)	309, 653, 756
DpnII	GATC	3 cut(s)	307, 651, 754
Eco130I	CCWWGG	2 cut(s)	132, 142
Eco47I	GGWCC	1 cut(s)	403
Eco57I	CTGAAG	1 cut(s)	63
Eco88I	CYCGRG	1 cut(s)	490
EcoRII	CCWGG	1 cut(s)	668
EcoT14I	CCWWGG	2 cut(s)	132, 142
ErhI	CCWWGG	2 cut(s)	132, 142
FaeI	CATG	6 cut(s)	136, 418, 472, 585, 626, 704
FalI	AAGNNNNNCTT	2 cut(s)	672, 704
FaqI	GGGAC	1 cut(s)	253
FatI	CATG	6 cut(s)	132, 414, 468, 581, 622, 700
FauNDI	CATATG	1 cut(s)	534
FbaI	TGATCA	1 cut(s)	651
Fnu4HI	GCNGC	4 cut(s)	514, 522, 573, 686
Fsp4HI	GCNGC	4 cut(s)	514, 522, 573, 686
FspBI	CTAG	2 cut(s)	602, 663
GluI	GCNGC	4 cut(s)	514, 522, 573, 686
HaeIII	GGCC	1 cut(s)	147
HapII	CCGG	3 cut(s)	276, 420, 540
Hin1II	CATG	6 cut(s)	136, 418, 472, 585, 626, 704
HinfI	GANTC	9 cut(s)	92, 167, 195, 230, 266, 284, 353, 453, 605
HpaII	CCGG	3 cut(s)	276, 420, 540
HphI	GGTGA	2 cut(s)	689, 776
Hpy166II	GTNNAC	1 cut(s)	375
Hpy188I	TCNGA	5 cut(s)	307, 403, 436, 643, 751
Hpy188III	TCNNGA	4 cut(s)	219, 450, 469, 784
Hpy8I	GTNNAC	1 cut(s)	375
Hpy99I	CGWCG	1 cut(s)	745
HpyCH4IV	ACGT	2 cut(s)	507, 740
HpyCH4V	TGCA	1 cut(s)	521
HpyF10VI	GCNNNNNNNGC	3 cut(s)	221, 420, 549
HpyF3I	CTNAG	2 cut(s)	455, 642
HpySE526I	ACGT	2 cut(s)	507, 740
Hsp92II	CATG	6 cut(s)	136, 418, 472, 585, 626, 704
Ksp22I	TGATCA	1 cut(s)	651
Kzo9I	GATC	3 cut(s)	307, 651, 754
Lsp1109I	GCAGC	4 cut(s)	525, 533, 559, 697
MaeI	CTAG	2 cut(s)	602, 663
MaeII	ACGT	2 cut(s)	507, 740
MalI	GATC	3 cut(s)	309, 653, 756
MboI	GATC	3 cut(s)	307, 651, 754
MboII	GAAGA	5 cut(s)	56, 59, 76, 149, 764
MflI	RGATCY	2 cut(s)	307, 754
MluCI	AATT	8 cut(s)	12, 172, 301, 364, 397, 439, 709, 769
MlyI	GAGTC	7 cut(s)	101, 204, 275, 293, 362, 447, 599
MnlI	CCTC	5 cut(s)	185, 209, 226, 469, 637
MseI	TTAA	3 cut(s)	86, 480, 737
MslI	CAYNNNNRTG	2 cut(s)	627, 699
MspI	CCGG	3 cut(s)	276, 420, 540
MspR9I	CCNGG	1 cut(s)	670
MvaI	CCWGG	1 cut(s)	670
MwoI	GCNNNNNNNGC	3 cut(s)	221, 420, 549
NcoI	CCATGG	1 cut(s)	132
NdeI	CATATG	1 cut(s)	534
NdeII	GATC	3 cut(s)	307, 651, 754
NlaIII	CATG	6 cut(s)	136, 418, 472, 585, 626, 704
NspI	RCATGY	1 cut(s)	418
PaeR7I	CTCGAG	1 cut(s)	490
PagI	TCATGA	1 cut(s)	468
PfeI	GAWTC	2 cut(s)	167, 230
PkrI	GCNGC	4 cut(s)	515, 523, 574, 687
PleI	GAGTC	7 cut(s)	100, 203, 274, 292, 361, 447, 599
PpsI	GAGTC	7 cut(s)	100, 203, 274, 292, 361, 447, 599
Psp6I	CCWGG	1 cut(s)	668
PspGI	CCWGG	1 cut(s)	668
PspPI	GGNCC	2 cut(s)	146, 403
PspXI	VCTCGAGB	1 cut(s)	490
PsuI	RGATCY	2 cut(s)	307, 754
RsaI	GTAC	1 cut(s)	251
RsaNI	GTAC	1 cut(s)	250
RseI	CAYNNNNRTG	2 cut(s)	627, 699
SaqAI	TTAA	3 cut(s)	86, 480, 737
SatI	GCNGC	4 cut(s)	514, 522, 573, 686
Sau3AI	GATC	3 cut(s)	307, 651, 754
Sau96I	GGNCC	2 cut(s)	146, 403
SchI	GAGTC	7 cut(s)	101, 204, 275, 293, 362, 447, 599
ScrFI	CCNGG	1 cut(s)	670
Sfr274I	CTCGAG	1 cut(s)	490
SinI	GGWCC	1 cut(s)	403
SlaI	CTCGAG	1 cut(s)	490
SmiMI	CAYNNNNRTG	2 cut(s)	627, 699
SmlI	CTYRAG	2 cut(s)	217, 490
SmoI	CTYRAG	2 cut(s)	217, 490
SpeI	ACTAGT	1 cut(s)	662
Sse9I	AATT	8 cut(s)	12, 172, 301, 364, 397, 439, 709, 769
SspI	AATATT	1 cut(s)	790
SspMI	CTAG	2 cut(s)	602, 663
StyD4I	CCNGG	1 cut(s)	668
StyI	CCWWGG	2 cut(s)	132, 142
TaiI	ACGT	2 cut(s)	510, 743
TaqI	TCGA	7 cut(s)	246, 264, 282, 449, 491, 503, 564
TasI	AATT	8 cut(s)	12, 172, 301, 364, 397, 439, 709, 769
TfiI	GAWTC	2 cut(s)	167, 230
Tru1I	TTAA	3 cut(s)	86, 480, 737
Tru9I	TTAA	3 cut(s)	86, 480, 737
TseI	GCWGC	4 cut(s)	513, 521, 572, 685
TspDTI	ATGAA	6 cut(s)	17, 457, 485, 570, 611, 683
TspGWI	ACGGA	1 cut(s)	423
VpaK11BI	GGWCC	1 cut(s)	403
XapI	RAATTY	5 cut(s)	364, 397, 439, 709, 769
XceI	RCATGY	1 cut(s)	418
XhoI	CTCGAG	1 cut(s)	490
XspI	CTAG	2 cut(s)	602, 663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.