Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0011469

Physical Location & Seq

Genomic Coordinates Reverse (-)

11078896 .. 11079510

Gene Structure 615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG131900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGCTAATTCATCACAAGGTCCAACATTTCTCGTCAACGATTCGAGTTATTTTGATGGTACTAGTACCGGAATAAGTACTACACAAACTTCCAGAGCTGCAGCTGCCTTCGACTCTCTATCCTATTTCGAGTTCCAAACTAGTATCGATCCATCCGGGTACAATTCTGACCTCGTTACTAGTACTCAATATCATCCGCCTACTACAAATTCCATTAGACCCTCTTTCAATTATGAAGCAATTATCGGATACAATTCTATGCCAAGTTTGGCGAATTCGGACCATGGAAGCATGTCCGGCACAGACTTCTCCTTTAGTTCAAGCAATAGCTCAACTGCCGGTTTCCATATGAACCACAACAACAATGTAGTGGAAAATAATGCAGGTACTTTTTCTTGGGATATAAACACAGAGAACAAATTAGAGTCCTTGTTTCATCAATTTGATGGCCCGAAATCAGAGGAACTAGTCATGATGAAGCCCAATTCATCATCATGGGAAGAAGGGCAGCTTCATCATCAACATCAGAATTCAGTAGATTTCAGTAGCTATCCGTTAACGTCGCTATCAGAAGATCTAACAGGTGCAAACTTTGATGTCTTCCAGCATATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

204

Amino Acids

22.39

Weight (kDa)

4.47

Isoelectric Point (pI)

37.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011469)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01680 AT4G01680 AT4G01680
fragaria_vesca	FvH4_5g06070
malus_domestica	MD06G1167200.v1.1 MD14G1172900.v1.1
prunus_persica	Prupe.5G167100_v2.0.a1 Prupe.5G167100_v2.0.a1 Prupe.5G167100_v2.0.a1
pyrus_communis	pycom06g14990 pycom14g14420
rosa_chinensis	RchiOBHm_Chr7g0192781
rosa_laevigata	RLG00000004329
rosa_multiflora	Rmu_sc0002040.1_g000020
rosa_roxburghii	Rroxscaffold_3G00262690
rosa_rugosa	Rorug07G0004600
rosa_samantha	Rh7AG129700 Rh7BG131000 Rh7DG131900
rosa_wichuraiana	Rw7G011100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	374
AciI	CCGC	1 cut(s)	197
AclWI	GGATC	1 cut(s)	143
AcsI	RAATTY	3 cut(s)	208, 274, 529
AfaI	GTAC	6 cut(s)	61, 67, 79, 161, 184, 388
AgsI	TTSAA	2 cut(s)	229, 321
AhlI	ACTAGT	4 cut(s)	62, 140, 179, 466
AluBI	AGCT	5 cut(s)	98, 104, 330, 511, 549
AluI	AGCT	5 cut(s)	98, 104, 330, 511, 549
AlwI	GGATC	1 cut(s)	143
AoxI	GGCC	1 cut(s)	448
ApeKI	GCWGC	4 cut(s)	98, 101, 104, 508
ApoI	RAATTY	3 cut(s)	208, 274, 529
AspS9I	GGNCC	3 cut(s)	20, 280, 449
AsuC2I	CCSGG	1 cut(s)	157
AvaII	GGWCC	2 cut(s)	20, 280
BbsI	GAAGAC	1 cut(s)	592
BbvI	GCAGC	4 cut(s)	85, 91, 113, 520
BccI	CCATC	3 cut(s)	50, 160, 440
BciVI	GTATCC	1 cut(s)	242
BcnI	CCSGG	1 cut(s)	157
BcuI	ACTAGT	4 cut(s)	62, 140, 179, 466
BfaI	CTAG	4 cut(s)	63, 141, 180, 467
BfmI	CTRYAG	1 cut(s)	99
BfuAI	ACCTGC	1 cut(s)	374
BfuI	GTATCC	1 cut(s)	242
BglII	AGATCT	1 cut(s)	574
BisI	GCNGC	4 cut(s)	99, 102, 105, 509
BlsI	GCNGC	4 cut(s)	100, 103, 106, 510
BmcAI	AGTACT	2 cut(s)	79, 184
Bme1390I	CCNGG	1 cut(s)	157
Bme18I	GGWCC	2 cut(s)	20, 280
BmgT120I	GGNCC	3 cut(s)	20, 280, 449
BmrFI	CCNGG	1 cut(s)	157
BpiI	GAAGAC	1 cut(s)	592
BpuMI	CCSGG	1 cut(s)	157
Bsa29I	ATCGAT	1 cut(s)	147
BsaJI	CCNNGG	1 cut(s)	283
BsaWI	WCCGGW	1 cut(s)	68
Bse118I	RCCGGY	1 cut(s)	338
BseCI	ATCGAT	1 cut(s)	147
BseDI	CCNNGG	1 cut(s)	283
BseGI	GGATG	2 cut(s)	152, 193
BseXI	GCAGC	4 cut(s)	85, 91, 113, 520
BshFI	GGCC	1 cut(s)	450
BshVI	ATCGAT	1 cut(s)	147
BsiSI	CCGG	4 cut(s)	69, 156, 297, 339
BsnI	GGCC	1 cut(s)	450
Bsp143I	GATC	2 cut(s)	148, 574
Bsp19I	CCATGG	1 cut(s)	283
BspACI	CCGC	1 cut(s)	197
BspANI	GGCC	1 cut(s)	450
BspDI	ATCGAT	1 cut(s)	147
BspHI	TCATGA	1 cut(s)	471
BspMAI	CTGCAG	1 cut(s)	103
BspMI	ACCTGC	1 cut(s)	374
BspPI	GGATC	1 cut(s)	143
BsrFI	RCCGGY	1 cut(s)	338
BssAI	RCCGGY	1 cut(s)	338
BssECI	CCNNGG	1 cut(s)	283
BssMI	GATC	2 cut(s)	148, 574
BssT1I	CCWWGG	1 cut(s)	283
BstDSI	CCRYGG	1 cut(s)	283
BstF5I	GGATG	2 cut(s)	152, 193
BstKTI	GATC	2 cut(s)	151, 577
BstMBI	GATC	2 cut(s)	148, 574
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 297
BstNSI	RCATGY	1 cut(s)	295
BstSCI	CCNGG	1 cut(s)	155
BstSFI	CTRYAG	1 cut(s)	99
BstV1I	GCAGC	4 cut(s)	85, 91, 113, 520
BstV2I	GAAGAC	1 cut(s)	592
BstX2I	RGATCY	1 cut(s)	574
BstYI	RGATCY	1 cut(s)	574
Bsu15I	ATCGAT	1 cut(s)	147
BsuI	GTATCC	1 cut(s)	242
BsuRI	GGCC	1 cut(s)	450
BsuTUI	ATCGAT	1 cut(s)	147
BtgI	CCRYGG	1 cut(s)	283
BtsCI	GGATG	2 cut(s)	152, 193
BveI	ACCTGC	1 cut(s)	374
CciI	TCATGA	1 cut(s)	471
Cfr10I	RCCGGY	1 cut(s)	338
Cfr13I	GGNCC	3 cut(s)	20, 280, 449
ClaI	ATCGAT	1 cut(s)	147
Csp6I	GTAC	6 cut(s)	60, 66, 78, 160, 183, 387
CviAII	CATG	4 cut(s)	284, 292, 472, 495
CviJI	RGCY	8 cut(s)	5, 98, 104, 330, 450, 481, 511, 549
CviKI_1	RGCY	8 cut(s)	5, 98, 104, 330, 450, 481, 511, 549
CviQI	GTAC	6 cut(s)	60, 66, 78, 160, 183, 387
DpnI	GATC	2 cut(s)	150, 576
DpnII	GATC	2 cut(s)	148, 574
EciI	GGCGGA	1 cut(s)	186
Eco130I	CCWWGG	1 cut(s)	283
Eco47I	GGWCC	2 cut(s)	20, 280
EcoRI	GAATTC	2 cut(s)	274, 529
EcoT14I	CCWWGG	1 cut(s)	283
ErhI	CCWWGG	1 cut(s)	283
FaeI	CATG	4 cut(s)	287, 295, 475, 498
FalI	AAGNNNNNCTT	2 cut(s)	495, 527
FatI	CATG	4 cut(s)	283, 291, 471, 494
FauNDI	CATATG	1 cut(s)	348
Fnu4HI	GCNGC	4 cut(s)	99, 102, 105, 509
FokI	GGATG	2 cut(s)	139, 180
Fsp4HI	GCNGC	4 cut(s)	99, 102, 105, 509
FspBI	CTAG	4 cut(s)	63, 141, 180, 467
GluI	GCNGC	4 cut(s)	99, 102, 105, 509
HaeIII	GGCC	1 cut(s)	450
HapII	CCGG	4 cut(s)	69, 156, 297, 339
Hin1II	CATG	4 cut(s)	287, 295, 475, 498
HincII	GTYRAC	2 cut(s)	37, 558
HindII	GTYRAC	2 cut(s)	37, 558
HinfI	GANTC	3 cut(s)	41, 113, 425
HpaI	GTTAAC	1 cut(s)	558
HpaII	CCGG	4 cut(s)	69, 156, 297, 339
Hpy166II	GTNNAC	2 cut(s)	37, 558
Hpy188I	TCNGA	6 cut(s)	169, 248, 280, 460, 528, 571
Hpy188III	TCNNGA	2 cut(s)	93, 472
Hpy8I	GTNNAC	2 cut(s)	37, 558
Hpy99I	CGWCG	1 cut(s)	565
HpyAV	CCTTC	2 cut(s)	118, 497
HpyCH4IV	ACGT	1 cut(s)	560
HpyCH4V	TGCA	3 cut(s)	101, 383, 587
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 297
HpySE526I	ACGT	1 cut(s)	560
Hsp92II	CATG	4 cut(s)	287, 295, 475, 498
KspAI	GTTAAC	1 cut(s)	558
Kzo9I	GATC	2 cut(s)	148, 574
LpnPI	CCDG	7 cut(s)	82, 106, 169, 310, 352, 369, 567
Lsp1109I	GCAGC	4 cut(s)	85, 91, 113, 520
MaeI	CTAG	4 cut(s)	63, 141, 180, 467
MaeII	ACGT	1 cut(s)	560
MaeIII	GTNAC	1 cut(s)	175
MalI	GATC	2 cut(s)	150, 576
MboI	GATC	2 cut(s)	148, 574
MboII	GAAGA	3 cut(s)	512, 584, 592
MflI	RGATCY	1 cut(s)	574
MlyI	GAGTC	2 cut(s)	107, 434
MmeI	TCCRAC	1 cut(s)	47
MnlI	CCTC	3 cut(s)	182, 232, 454
MseI	TTAA	1 cut(s)	557
MslI	CAYNNNNRTG	1 cut(s)	493
MspA1I	CMGCKG	1 cut(s)	104
MspI	CCGG	4 cut(s)	69, 156, 297, 339
MspR9I	CCNGG	1 cut(s)	157
MwoI	GCNNNNNNNGC	2 cut(s)	104, 297
NciI	CCSGG	1 cut(s)	157
NcoI	CCATGG	1 cut(s)	283
NdeI	CATATG	1 cut(s)	348
NdeII	GATC	2 cut(s)	148, 574
NlaIII	CATG	4 cut(s)	287, 295, 475, 498
NspI	RCATGY	1 cut(s)	295
PagI	TCATGA	1 cut(s)	471
PfeI	GAWTC	1 cut(s)	41
PkrI	GCNGC	4 cut(s)	100, 103, 106, 510
PleI	GAGTC	2 cut(s)	107, 433
PpsI	GAGTC	2 cut(s)	107, 433
PspPI	GGNCC	3 cut(s)	20, 280, 449
PstI	CTGCAG	1 cut(s)	103
PsuI	RGATCY	1 cut(s)	574
PvuII	CAGCTG	1 cut(s)	104
RsaI	GTAC	6 cut(s)	61, 67, 79, 161, 184, 388
RsaNI	GTAC	6 cut(s)	60, 66, 78, 160, 183, 387
RseI	CAYNNNNRTG	1 cut(s)	493
SaqAI	TTAA	1 cut(s)	557
SatI	GCNGC	4 cut(s)	99, 102, 105, 509
Sau3AI	GATC	2 cut(s)	148, 574
Sau96I	GGNCC	3 cut(s)	20, 280, 449
ScaI	AGTACT	2 cut(s)	79, 184
SchI	GAGTC	2 cut(s)	107, 434
ScrFI	CCNGG	1 cut(s)	157
SfcI	CTRYAG	1 cut(s)	99
SinI	GGWCC	2 cut(s)	20, 280
SmiMI	CAYNNNNRTG	1 cut(s)	493
SpeI	ACTAGT	4 cut(s)	62, 140, 179, 466
SsiI	CCGC	1 cut(s)	197
SspMI	CTAG	4 cut(s)	63, 141, 180, 467
StyD4I	CCNGG	1 cut(s)	155
StyI	CCWWGG	1 cut(s)	283
TaiI	ACGT	1 cut(s)	563
TaqI	TCGA	4 cut(s)	44, 111, 129, 147
TatI	WGTACW	2 cut(s)	77, 182
TfiI	GAWTC	1 cut(s)	41
Tru1I	TTAA	1 cut(s)	557
Tru9I	TTAA	1 cut(s)	557
TseI	GCWGC	4 cut(s)	98, 101, 104, 508
TspDTI	ATGAA	6 cut(s)	249, 365, 425, 477, 491, 503
TspGWI	ACGGA	1 cut(s)	543
VpaK11BI	GGWCC	2 cut(s)	20, 280
XapI	RAATTY	3 cut(s)	208, 274, 529
XceI	RCATGY	1 cut(s)	295
XspI	CTAG	4 cut(s)	63, 141, 180, 467
ZrmI	AGTACT	2 cut(s)	79, 184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.