Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0011469

Physical Location & Seq

Genomic Coordinates Reverse (-)

10330206 .. 10330976

Gene Structure 771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG129700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGAAGCAAGGGATTGACCCGACCACTCACAAGCCACTAACAGATGAAGAAATACTCAAAGACGATAAGGCGAATATAGTTAAGTGCTCAGAATTGAATAACGAGTCTTCATCCTTGCCACTAGTGCCAGCTCATGAGCATCACCACGAACTTCCCATGGCTAATTCATCACAAGGTCCAACATTTCTCGTCAACGATTCGAGTTATTTTGATGGTACTAGTACCGGAATAAGTACTACACAAACTTCCAGAGCTGCAGCTGCCTTCGACTCTCTATCCTATTTCGAGTTCCAAACTAGTATCGATCCATCCGGGTACAATTCTGACCTCGTTACTAGTACTCAATATCATCCGCCTACTACAAATTCCATTAGACCCTCTTTCAATTATGAAGCAATTATCGGATACAATTCTATGCCAAGTTTGGCGAATTCGGACCATGGAAGCATGTCCGGCACAGACTTCTCCTTTAGTTCAAGCAATAGCTCAACTGCCGGTTTCCATATGAACCACAACAACAATGTAGTGGAAAATAATGCAGGTACTTTTTCTTGGGATATAAACACAGAGAACAAATTAGAGTCCTTGTTTCATCAATTTGATGGCCCGAAATCAGAGGAACTGGTCATGATGAAGCCCAATTCATCATCATGGGAAGAAGGGCAGCTTCATCATCAACATCAGAATTCAGTAGATTTCAGTAGCTATCCGTTAACGTCGCTATCAGAAGATCTAACAGGTGCAAACTTTGATGTCTTCCAGCATATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

256

Amino Acids

28.21

Weight (kDa)

4.7

Isoelectric Point (pI)

41.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011469)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01680 AT4G01680 AT4G01680
fragaria_vesca	FvH4_5g06070
malus_domestica	MD06G1167200.v1.1 MD14G1172900.v1.1
prunus_persica	Prupe.5G167100_v2.0.a1 Prupe.5G167100_v2.0.a1 Prupe.5G167100_v2.0.a1
pyrus_communis	pycom06g14990 pycom14g14420
rosa_chinensis	RchiOBHm_Chr7g0192781
rosa_laevigata	RLG00000004329
rosa_multiflora	Rmu_sc0002040.1_g000020
rosa_roxburghii	Rroxscaffold_3G00262690
rosa_rugosa	Rorug07G0004600
rosa_samantha	Rh7AG129700 Rh7BG131000 Rh7DG131900
rosa_wichuraiana	Rw7G011100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	530
AciI	CCGC	1 cut(s)	353
AclWI	GGATC	1 cut(s)	299
AcsI	RAATTY	3 cut(s)	364, 430, 685
AfaI	GTAC	6 cut(s)	217, 223, 235, 317, 340, 544
AgsI	TTSAA	3 cut(s)	97, 385, 477
AhlI	ACTAGT	4 cut(s)	121, 218, 296, 335
AluBI	AGCT	6 cut(s)	131, 254, 260, 486, 667, 705
AluI	AGCT	6 cut(s)	131, 254, 260, 486, 667, 705
Alw21I	GWGCWC	1 cut(s)	89
AlwI	GGATC	1 cut(s)	299
AoxI	GGCC	1 cut(s)	604
ApeKI	GCWGC	4 cut(s)	254, 257, 260, 664
ApoI	RAATTY	3 cut(s)	364, 430, 685
AspS9I	GGNCC	3 cut(s)	176, 436, 605
AsuC2I	CCSGG	1 cut(s)	313
AsuHPI	GGTGA	1 cut(s)	134
AvaII	GGWCC	2 cut(s)	176, 436
BbsI	GAAGAC	2 cut(s)	99, 748
Bbv12I	GWGCWC	1 cut(s)	89
BbvI	GCAGC	4 cut(s)	241, 247, 269, 676
BccI	CCATC	3 cut(s)	206, 316, 596
BciVI	GTATCC	1 cut(s)	398
BcnI	CCSGG	1 cut(s)	313
BcuI	ACTAGT	4 cut(s)	121, 218, 296, 335
BfaI	CTAG	4 cut(s)	122, 219, 297, 336
BfmI	CTRYAG	1 cut(s)	255
BfuAI	ACCTGC	1 cut(s)	530
BfuI	GTATCC	1 cut(s)	398
BglII	AGATCT	1 cut(s)	730
BisI	GCNGC	4 cut(s)	255, 258, 261, 665
BlsI	GCNGC	4 cut(s)	256, 259, 262, 666
BmcAI	AGTACT	2 cut(s)	235, 340
Bme1390I	CCNGG	1 cut(s)	313
Bme18I	GGWCC	2 cut(s)	176, 436
BmgT120I	GGNCC	3 cut(s)	176, 436, 605
BmrFI	CCNGG	1 cut(s)	313
BmsI	GCATC	1 cut(s)	148
BpiI	GAAGAC	2 cut(s)	99, 748
BpuMI	CCSGG	1 cut(s)	313
Bsa29I	ATCGAT	1 cut(s)	303
BsaJI	CCNNGG	2 cut(s)	156, 439
BsaWI	WCCGGW	1 cut(s)	224
Bse118I	RCCGGY	1 cut(s)	494
Bse1I	ACTGG	1 cut(s)	627
BseCI	ATCGAT	1 cut(s)	303
BseDI	CCNNGG	2 cut(s)	156, 439
BseGI	GGATG	3 cut(s)	110, 308, 349
BseMII	CTCAG	1 cut(s)	102
BseNI	ACTGG	1 cut(s)	627
BseXI	GCAGC	4 cut(s)	241, 247, 269, 676
BshFI	GGCC	1 cut(s)	606
BshVI	ATCGAT	1 cut(s)	303
BsiHKAI	GWGCWC	1 cut(s)	89
BsiSI	CCGG	4 cut(s)	225, 312, 453, 495
BsnI	GGCC	1 cut(s)	606
Bsp1286I	GDGCHC	1 cut(s)	89
Bsp143I	GATC	2 cut(s)	304, 730
Bsp19I	CCATGG	2 cut(s)	156, 439
BspACI	CCGC	1 cut(s)	353
BspANI	GGCC	1 cut(s)	606
BspCNI	CTCAG	1 cut(s)	101
BspDI	ATCGAT	1 cut(s)	303
BspHI	TCATGA	2 cut(s)	133, 627
BspMAI	CTGCAG	1 cut(s)	259
BspMI	ACCTGC	1 cut(s)	530
BspPI	GGATC	1 cut(s)	299
BsrFI	RCCGGY	1 cut(s)	494
BsrI	ACTGG	1 cut(s)	627
BssAI	RCCGGY	1 cut(s)	494
BssECI	CCNNGG	2 cut(s)	156, 439
BssMI	GATC	2 cut(s)	304, 730
BssT1I	CCWWGG	2 cut(s)	156, 439
BstC8I	GCNNGC	1 cut(s)	129
BstDEI	CTNAG	1 cut(s)	88
BstDSI	CCRYGG	2 cut(s)	156, 439
BstF5I	GGATG	3 cut(s)	110, 308, 349
BstKTI	GATC	2 cut(s)	307, 733
BstMBI	GATC	2 cut(s)	304, 730
BstMWI	GCNNNNNNNGC	3 cut(s)	124, 260, 453
BstNSI	RCATGY	1 cut(s)	451
BstSCI	CCNGG	1 cut(s)	311
BstSFI	CTRYAG	1 cut(s)	255
BstV1I	GCAGC	4 cut(s)	241, 247, 269, 676
BstV2I	GAAGAC	2 cut(s)	99, 748
BstX2I	RGATCY	1 cut(s)	730
BstYI	RGATCY	1 cut(s)	730
Bsu15I	ATCGAT	1 cut(s)	303
BsuI	GTATCC	1 cut(s)	398
BsuRI	GGCC	1 cut(s)	606
BsuTUI	ATCGAT	1 cut(s)	303
BtgI	CCRYGG	2 cut(s)	156, 439
BtsCI	GGATG	3 cut(s)	110, 308, 349
BveI	ACCTGC	1 cut(s)	530
Cac8I	GCNNGC	1 cut(s)	129
CciI	TCATGA	2 cut(s)	133, 627
Cfr10I	RCCGGY	1 cut(s)	494
Cfr13I	GGNCC	3 cut(s)	176, 436, 605
ClaI	ATCGAT	1 cut(s)	303
Csp6I	GTAC	6 cut(s)	216, 222, 234, 316, 339, 543
CviAII	CATG	6 cut(s)	134, 157, 440, 448, 628, 651
CviQI	GTAC	6 cut(s)	216, 222, 234, 316, 339, 543
DdeI	CTNAG	1 cut(s)	88
DpnI	GATC	2 cut(s)	306, 732
DpnII	GATC	2 cut(s)	304, 730
EciI	GGCGGA	1 cut(s)	342
Eco130I	CCWWGG	2 cut(s)	156, 439
Eco47I	GGWCC	2 cut(s)	176, 436
EcoRI	GAATTC	2 cut(s)	430, 685
EcoT14I	CCWWGG	2 cut(s)	156, 439
ErhI	CCWWGG	2 cut(s)	156, 439
FaeI	CATG	6 cut(s)	137, 160, 443, 451, 631, 654
FalI	AAGNNNNNCTT	2 cut(s)	651, 683
FatI	CATG	6 cut(s)	133, 156, 439, 447, 627, 650
FauNDI	CATATG	1 cut(s)	504
Fnu4HI	GCNGC	4 cut(s)	255, 258, 261, 665
FokI	GGATG	3 cut(s)	97, 295, 336
Fsp4HI	GCNGC	4 cut(s)	255, 258, 261, 665
FspBI	CTAG	4 cut(s)	122, 219, 297, 336
GluI	GCNGC	4 cut(s)	255, 258, 261, 665
HaeIII	GGCC	1 cut(s)	606
HapII	CCGG	4 cut(s)	225, 312, 453, 495
Hin1II	CATG	6 cut(s)	137, 160, 443, 451, 631, 654
HincII	GTYRAC	2 cut(s)	193, 714
HindII	GTYRAC	2 cut(s)	193, 714
HinfI	GANTC	4 cut(s)	104, 197, 269, 581
HpaI	GTTAAC	1 cut(s)	714
HpaII	CCGG	4 cut(s)	225, 312, 453, 495
HphI	GGTGA	1 cut(s)	134
Hpy166II	GTNNAC	2 cut(s)	193, 714
Hpy188I	TCNGA	7 cut(s)	91, 325, 404, 436, 616, 684, 727
Hpy188III	TCNNGA	3 cut(s)	134, 249, 628
Hpy8I	GTNNAC	2 cut(s)	193, 714
Hpy99I	CGWCG	1 cut(s)	721
HpyAV	CCTTC	2 cut(s)	274, 653
HpyCH4IV	ACGT	1 cut(s)	716
HpyCH4V	TGCA	3 cut(s)	257, 539, 743
HpyF10VI	GCNNNNNNNGC	3 cut(s)	124, 260, 453
HpyF3I	CTNAG	1 cut(s)	88
HpySE526I	ACGT	1 cut(s)	716
Hsp92II	CATG	6 cut(s)	137, 160, 443, 451, 631, 654
KspAI	GTTAAC	1 cut(s)	714
Kzo9I	GATC	2 cut(s)	304, 730
LpnPI	CCDG	9 cut(s)	141, 238, 262, 325, 466, 508, 525, 608, 723
Lsp1109I	GCAGC	4 cut(s)	241, 247, 269, 676
LweI	GCATC	1 cut(s)	148
MaeI	CTAG	4 cut(s)	122, 219, 297, 336
MaeII	ACGT	1 cut(s)	716
MaeIII	GTNAC	1 cut(s)	331
MalI	GATC	2 cut(s)	306, 732
MboI	GATC	2 cut(s)	304, 730
MboII	GAAGA	5 cut(s)	59, 99, 668, 740, 748
MflI	RGATCY	1 cut(s)	730
MhlI	GDGCHC	1 cut(s)	89
MlyI	GAGTC	3 cut(s)	113, 263, 590
MmeI	TCCRAC	1 cut(s)	203
MnlI	CCTC	3 cut(s)	338, 388, 610
MseI	TTAA	2 cut(s)	81, 713
MslI	CAYNNNNRTG	1 cut(s)	649
MspA1I	CMGCKG	1 cut(s)	260
MspI	CCGG	4 cut(s)	225, 312, 453, 495
MspR9I	CCNGG	1 cut(s)	313
MwoI	GCNNNNNNNGC	3 cut(s)	124, 260, 453
NciI	CCSGG	1 cut(s)	313
NcoI	CCATGG	2 cut(s)	156, 439
NdeI	CATATG	1 cut(s)	504
NdeII	GATC	2 cut(s)	304, 730
NlaIII	CATG	6 cut(s)	137, 160, 443, 451, 631, 654
NspI	RCATGY	1 cut(s)	451
PagI	TCATGA	2 cut(s)	133, 627
PfeI	GAWTC	1 cut(s)	197
PkrI	GCNGC	4 cut(s)	256, 259, 262, 666
PleI	GAGTC	3 cut(s)	112, 263, 589
PpsI	GAGTC	3 cut(s)	112, 263, 589
PspPI	GGNCC	3 cut(s)	176, 436, 605
PstI	CTGCAG	1 cut(s)	259
PsuI	RGATCY	1 cut(s)	730
PvuII	CAGCTG	1 cut(s)	260
RsaI	GTAC	6 cut(s)	217, 223, 235, 317, 340, 544
RsaNI	GTAC	6 cut(s)	216, 222, 234, 316, 339, 543
RseI	CAYNNNNRTG	1 cut(s)	649
SaqAI	TTAA	2 cut(s)	81, 713
SatI	GCNGC	4 cut(s)	255, 258, 261, 665
Sau3AI	GATC	2 cut(s)	304, 730
Sau96I	GGNCC	3 cut(s)	176, 436, 605
ScaI	AGTACT	2 cut(s)	235, 340
SchI	GAGTC	3 cut(s)	113, 263, 590
ScrFI	CCNGG	1 cut(s)	313
SduI	GDGCHC	1 cut(s)	89
SfaNI	GCATC	1 cut(s)	148
SfcI	CTRYAG	1 cut(s)	255
SinI	GGWCC	2 cut(s)	176, 436
SmiMI	CAYNNNNRTG	1 cut(s)	649
SpeI	ACTAGT	4 cut(s)	121, 218, 296, 335
SsiI	CCGC	1 cut(s)	353
SspMI	CTAG	4 cut(s)	122, 219, 297, 336
StyD4I	CCNGG	1 cut(s)	311
StyI	CCWWGG	2 cut(s)	156, 439
TaiI	ACGT	1 cut(s)	719
TaqI	TCGA	4 cut(s)	200, 267, 285, 303
TatI	WGTACW	2 cut(s)	233, 338
TfiI	GAWTC	1 cut(s)	197
Tru1I	TTAA	2 cut(s)	81, 713
Tru9I	TTAA	2 cut(s)	81, 713
TseI	GCWGC	4 cut(s)	254, 257, 260, 664
TspGWI	ACGGA	1 cut(s)	699
VpaK11BI	GGWCC	2 cut(s)	176, 436
XapI	RAATTY	3 cut(s)	364, 430, 685
XceI	RCATGY	1 cut(s)	451
XspI	CTAG	4 cut(s)	122, 219, 297, 336
ZrmI	AGTACT	2 cut(s)	235, 340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.