AT4G01790

Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0013569
Physical Location & Seq
Forward (+)
769799 .. 770835
1037 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G01790.1

Sequence Viewer

Length: 504 bp
ATGAGAGGCGTCACACCCATAAACCCTCAGAAGAAGATAGAAGCTGATTCGAATCCCGTCAAAGAATCTGATTACTATGAAGGCGAACGTCTTACTCATCTACTCGACTTGATTCAGAGAGGAATTGAGACGTCCAAGCTTTCGAATGTGAACTCATTACCTGAGAAGATATGGCTCAAGAAGCAAATAGCGATTGGGATCAACGAAGTCACTCGAGTTCTTGAGAGGATGAATCCCAACAATACTAGTGACCAACAACAAAACCCTAAACAACTTCAGGTAGTGATTTTAGTAGCAGATTGTAAACCGAGGATGCTGACCAAGCATATACCCAACTTAGCTGCTTCGAGAAACGTTCCGGTTCTCTATGTAAGGGACAACAAACGAGCCTCTCTCAGATTAGGTGAGTTGGTTAAGCTCAAGACGGCTCTAGCCATCGGTATCAAGGCTAGAGGAAATGATCTCAACCTACTACTTAAACAGATTCTTCCGAGAGATTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_L7Ae

Protein Analysis

167

Amino Acids

18.86

Weight (kDa)

9.9

Isoelectric Point (pI)

32.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L7Ae PF01248 56 - 150 1.2e-08 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013569)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01790
fragaria_vesca FvH4_1g26230 FvH4_1g26230 FvH4_1g26230
malus_domestica MD09G1290400.v1.1 MD17G1285100.v1.1
prunus_persica Prupe.3G002600_v2.0.a1
pyrus_communis pycom09g19840
rosa_chinensis RchiOBHm_Chr3g0485771
rosa_laevigata RLG00000023126
rosa_multiflora Rmu_sc0012870.1_g000001
rosa_roxburghii Rroxscaffold_6G00396320
rosa_rugosa Rorug03G0221300
rosa_samantha Rh3AG270600 Rh3BG306100 Rh3CG304500 Rh3DG300600
rosa_wichuraiana Rw3G024100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 134
AclI AACGTT 1 cut(s) 354
AclWI GGATC 1 cut(s) 206
AcuI CTGAAG 1 cut(s) 260
AcyI GRCGYC 2 cut(s) 9, 131
AhlI ACTAGT 1 cut(s) 245
AluBI AGCT 4 cut(s) 44, 139, 341, 418
AluI AGCT 4 cut(s) 44, 139, 341, 418
Alw26I GTCTC 1 cut(s) 122
AlwI GGATC 1 cut(s) 206
Ama87I CYCGRG 1 cut(s) 213
ApeKI GCWGC 1 cut(s) 341
AsuHPI GGTGA 1 cut(s) 416
AsuII TTCGAA 2 cut(s) 50, 143
AvaI CYCGRG 1 cut(s) 213
BbvI GCAGC 1 cut(s) 328
BccI CCATC 1 cut(s) 443
BceAI ACGGC 1 cut(s) 441
BcoDI GTCTC 1 cut(s) 122
BcuI ACTAGT 1 cut(s) 245
BfaI CTAG 3 cut(s) 246, 431, 450
BisI GCNGC 1 cut(s) 342
BlsI GCNGC 1 cut(s) 343
BmeT110I CYCGRG 1 cut(s) 213
BmsI GCATC 1 cut(s) 303
BplI GAGNNNNNCTC 2 cut(s) 378, 410
Bpu14I TTCGAA 2 cut(s) 50, 143
BpuEI CTTGAG 3 cut(s) 161, 242, 404
BsaBI GATNNNNATC 2 cut(s) 51, 197
BsaHI GRCGYC 2 cut(s) 9, 131
BsaJI CCNNGG 1 cut(s) 308
BsaWI WCCGGW 1 cut(s) 358
Bse8I GATNNNNATC 2 cut(s) 51, 197
BseDI CCNNGG 1 cut(s) 308
BseGI GGATG 2 cut(s) 234, 318
BseJI GATNNNNATC 2 cut(s) 51, 197
BseMII CTCAG 3 cut(s) 41, 153, 409
BseXI GCAGC 1 cut(s) 328
BsiHKCI CYCGRG 1 cut(s) 213
BsiSI CCGG 1 cut(s) 359
BslFI GGGAC 1 cut(s) 389
BsmAI GTCTC 1 cut(s) 122
BsmBI CGTCTC 1 cut(s) 122
BsmFI GGGAC 1 cut(s) 389
BsoBI CYCGRG 1 cut(s) 213
Bsp119I TTCGAA 2 cut(s) 50, 143
Bsp143I GATC 2 cut(s) 198, 460
BspCNI CTCAG 3 cut(s) 40, 154, 408
BspPI GGATC 1 cut(s) 206
BspT104I TTCGAA 2 cut(s) 50, 143
BssECI CCNNGG 1 cut(s) 308
BssMI GATC 2 cut(s) 198, 460
BssNI GRCGYC 2 cut(s) 9, 131
BstACI GRCGYC 2 cut(s) 9, 131
BstBI TTCGAA 2 cut(s) 50, 143
BstDEI CTNAG 4 cut(s) 27, 162, 337, 395
BstF5I GGATG 2 cut(s) 234, 318
BstKTI GATC 2 cut(s) 201, 463
BstMAI GTCTC 1 cut(s) 122
BstMBI GATC 2 cut(s) 198, 460
BstMWI GCNNNNNNNGC 2 cut(s) 181, 322
BstV1I GCAGC 1 cut(s) 328
BtsCI GGATG 2 cut(s) 234, 318
CviJI RGCY 9 cut(s) 44, 139, 175, 341, 389, 418, 428, 434, 449
CviKI_1 RGCY 9 cut(s) 44, 139, 175, 341, 389, 418, 428, 434, 449
DdeI CTNAG 4 cut(s) 27, 162, 337, 395
DpnI GATC 2 cut(s) 200, 462
DpnII GATC 2 cut(s) 198, 460
Eco57I CTGAAG 1 cut(s) 260
Eco88I CYCGRG 1 cut(s) 213
Esp3I CGTCTC 1 cut(s) 122
FaiI YATR 6 cut(s) 20, 78, 172, 327, 329, 369
FaqI GGGAC 1 cut(s) 389
Fnu4HI GCNGC 1 cut(s) 342
FokI GGATG 2 cut(s) 241, 325
Fsp4HI GCNGC 1 cut(s) 342
FspBI CTAG 3 cut(s) 246, 431, 450
GluI GCNGC 1 cut(s) 342
HapII CCGG 1 cut(s) 359
Hin1I GRCGYC 2 cut(s) 9, 131
HindIII AAGCTT 1 cut(s) 137
HinfI GANTC 7 cut(s) 47, 52, 65, 112, 232, 484, 497
HpaII CCGG 1 cut(s) 359
HphI GGTGA 1 cut(s) 416
Hpy166II GTNNAC 2 cut(s) 151, 305
Hpy188I TCNGA 5 cut(s) 30, 70, 117, 398, 492
Hpy188III TCNNGA 5 cut(s) 178, 221, 348, 421, 501
Hpy8I GTNNAC 2 cut(s) 151, 305
HpyAV CCTTC 1 cut(s) 74
HpyCH4IV ACGT 3 cut(s) 88, 131, 354
HpyF10VI GCNNNNNNNGC 2 cut(s) 181, 322
HpyF3I CTNAG 4 cut(s) 27, 162, 337, 395
HpySE526I ACGT 3 cut(s) 88, 131, 354
Hsp92I GRCGYC 2 cut(s) 9, 131
Kzo9I GATC 2 cut(s) 198, 460
LpnPI CCDG 3 cut(s) 174, 263, 372
Lsp1109I GCAGC 1 cut(s) 328
LweI GCATC 1 cut(s) 303
MaeI CTAG 3 cut(s) 246, 431, 450
MaeII ACGT 3 cut(s) 88, 131, 354
MaeIII GTNAC 3 cut(s) 10, 208, 248
MalI GATC 2 cut(s) 200, 462
MboI GATC 2 cut(s) 198, 460
MboII GAAGA 4 cut(s) 43, 46, 178, 479
MluCI AATT 1 cut(s) 123
MnlI CCTC 6 cut(s) 36, 113, 219, 303, 400, 446
MseI TTAA 2 cut(s) 414, 477
MspI CCGG 1 cut(s) 359
MwoI GCNNNNNNNGC 2 cut(s) 181, 322
NdeII GATC 2 cut(s) 198, 460
NmuCI GTSAC 3 cut(s) 10, 208, 248
NspV TTCGAA 2 cut(s) 50, 143
PaeR7I CTCGAG 1 cut(s) 213
PfeI GAWTC 7 cut(s) 47, 52, 65, 112, 232, 484, 497
PkrI GCNGC 1 cut(s) 343
Psp1406I AACGTT 1 cut(s) 354
PspXI VCTCGAGB 1 cut(s) 213
SaqAI TTAA 2 cut(s) 414, 477
SatI GCNGC 1 cut(s) 342
Sau3AI GATC 2 cut(s) 198, 460
SfaNI GCATC 1 cut(s) 303
Sfr274I CTCGAG 1 cut(s) 213
SfuI TTCGAA 2 cut(s) 50, 143
SlaI CTCGAG 1 cut(s) 213
SmlI CTYRAG 4 cut(s) 176, 213, 221, 419
SmoI CTYRAG 4 cut(s) 176, 213, 221, 419
SpeI ACTAGT 1 cut(s) 245
Sse9I AATT 1 cut(s) 123
SspMI CTAG 3 cut(s) 246, 431, 450
TaiI ACGT 3 cut(s) 91, 134, 357
TaqI TCGA 5 cut(s) 50, 105, 143, 214, 347
TasI AATT 1 cut(s) 123
TfiI GAWTC 7 cut(s) 47, 52, 65, 112, 232, 484, 497
Tru1I TTAA 2 cut(s) 414, 477
Tru9I TTAA 2 cut(s) 414, 477
TseFI GTSAC 3 cut(s) 10, 208, 248
TseI GCWGC 1 cut(s) 341
Tsp45I GTSAC 3 cut(s) 10, 208, 248
TspDTI ATGAA 2 cut(s) 93, 245
XhoI CTCGAG 1 cut(s) 213
XspI CTAG 3 cut(s) 246, 431, 450
ZraI GACGTC 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.