MD17G1285100.v1.1

Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0013569
Physical Location & Seq
Reverse (-)
34429458 .. 34429988
531 bp
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UTR
Exon/CDS
Intron
MD17G1285100.v1.1.491

Sequence Viewer

Length: 372 bp
ATGCGAAAGCTTCAGGCTGTTGTGATCGCATCCGATTGCAACCCACGATGGCTGTCAAAGCATCTGCCAAGCTTGGCTCTTTCAGGGAAGGTCCCAGTCATCTTTCTCAAAGATAACGAGGGAGCTTTTTTAAGATTGGGCCAACTTCTCAAACTCAAAACAGCCATTGCCATTGGTGTTAAGGCTAAAGGAAATGCCATCAATCTACTTTTTGAGGAGATTCTTAGTGGCAATATAATGCAACTCGGTGTCGGAACTGAAGGCCTCAACTCTTCAGTCTCAACTCTTCTCAAATGCTTACCACAACACAAGGAGAAGTTCAGAGATGAGCCTCCTATGCATGTAGATGTTGAAGACAACAGTTGTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_L7Ae

Protein Analysis

124

Amino Acids

13.41

Weight (kDa)

8.86

Isoelectric Point (pI)

43.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L7Ae PF01248 2 - 66 1e-06 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013569)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01790
fragaria_vesca FvH4_1g26230 FvH4_1g26230 FvH4_1g26230
malus_domestica MD09G1290400.v1.1 MD17G1285100.v1.1
prunus_persica Prupe.3G002600_v2.0.a1
pyrus_communis pycom09g19840
rosa_chinensis RchiOBHm_Chr3g0485771
rosa_laevigata RLG00000023126
rosa_multiflora Rmu_sc0012870.1_g000001
rosa_roxburghii Rroxscaffold_6G00396320
rosa_rugosa Rorug03G0221300
rosa_samantha Rh3AG270600 Rh3BG306100 Rh3CG304500 Rh3DG300600
rosa_wichuraiana Rw3G024100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 2 cut(s) 258, 279
AgsI TTSAA 1 cut(s) 353
AluBI AGCT 4 cut(s) 10, 72, 125, 369
AluI AGCT 4 cut(s) 10, 72, 125, 369
Alw26I GTCTC 1 cut(s) 283
AoxI GGCC 2 cut(s) 139, 262
AspS9I GGNCC 2 cut(s) 91, 139
AvaII GGWCC 1 cut(s) 91
BbsI GAAGAC 1 cut(s) 360
BccI CCATC 2 cut(s) 42, 206
BcoDI GTCTC 1 cut(s) 283
BfaI CTAG 1 cut(s) 370
Bme18I GGWCC 1 cut(s) 91
BmgT120I GGNCC 2 cut(s) 91, 139
BmiI GGNNCC 1 cut(s) 93
BmrI ACTGGG 1 cut(s) 89
BmsI GCATC 2 cut(s) 38, 70
BmuI ACTGGG 1 cut(s) 89
BpiI GAAGAC 1 cut(s) 360
Bse1I ACTGG 1 cut(s) 95
Bse3DI GCAATG 1 cut(s) 165
BseGI GGATG 1 cut(s) 29
BseMI GCAATG 1 cut(s) 165
BseNI ACTGG 1 cut(s) 95
BseRI GAGGAG 1 cut(s) 230
BshFI GGCC 2 cut(s) 141, 264
BslFI GGGAC 1 cut(s) 77
BsmAI GTCTC 1 cut(s) 283
BsmFI GGGAC 1 cut(s) 77
BsnI GGCC 2 cut(s) 141, 264
Bsp143I GATC 1 cut(s) 24
BspANI GGCC 2 cut(s) 141, 264
BspLI GGNNCC 1 cut(s) 93
BsrDI GCAATG 1 cut(s) 165
BsrI ACTGG 1 cut(s) 95
BssMI GATC 1 cut(s) 24
Bst4CI ACNGT 1 cut(s) 362
Bst6I CTCTTC 2 cut(s) 277, 291
BstDEI CTNAG 1 cut(s) 224
BstF5I GGATG 1 cut(s) 29
BstKTI GATC 1 cut(s) 27
BstMAI GTCTC 1 cut(s) 283
BstMBI GATC 1 cut(s) 24
BstMWI GCNNNNNNNGC 2 cut(s) 58, 337
BstNSI RCATGY 1 cut(s) 344
BstV2I GAAGAC 1 cut(s) 360
BsuRI GGCC 2 cut(s) 141, 264
BtsCI GGATG 1 cut(s) 29
Cfr13I GGNCC 2 cut(s) 91, 139
CviAII CATG 1 cut(s) 341
DdeI CTNAG 1 cut(s) 224
DpnI GATC 1 cut(s) 26
DpnII GATC 1 cut(s) 24
Eam1104I CTCTTC 2 cut(s) 277, 291
EarI CTCTTC 2 cut(s) 277, 291
Eco147I AGGCCT 1 cut(s) 264
Eco47I GGWCC 1 cut(s) 91
Eco57I CTGAAG 2 cut(s) 258, 279
EcoO109I RGGNCCY 1 cut(s) 91
EcoT22I ATGCAT 1 cut(s) 342
FaeI CATG 1 cut(s) 344
FaiI YATR 3 cut(s) 236, 338, 342
FaqI GGGAC 1 cut(s) 77
FatI CATG 1 cut(s) 340
FokI GGATG 1 cut(s) 16
FspBI CTAG 1 cut(s) 370
HaeIII GGCC 2 cut(s) 141, 264
Hin1II CATG 1 cut(s) 344
HindIII AAGCTT 2 cut(s) 8, 70
HinfI GANTC 1 cut(s) 220
Hpy188I TCNGA 3 cut(s) 34, 254, 323
HpyAV CCTTC 2 cut(s) 82, 254
HpyCH4III ACNGT 1 cut(s) 362
HpyCH4V TGCA 3 cut(s) 39, 241, 340
HpyF10VI GCNNNNNNNGC 2 cut(s) 58, 337
HpyF3I CTNAG 1 cut(s) 224
Hsp92II CATG 1 cut(s) 344
Kzo9I GATC 1 cut(s) 24
LmnI GCTCC 1 cut(s) 122
LpnPI CCDG 2 cut(s) 69, 108
LweI GCATC 2 cut(s) 38, 70
MaeI CTAG 1 cut(s) 370
MalI GATC 1 cut(s) 26
MboI GATC 1 cut(s) 24
MboII GAAGA 3 cut(s) 264, 278, 365
MmeI TCCRAC 1 cut(s) 232
MnlI CCTC 4 cut(s) 112, 208, 275, 342
Mph1103I ATGCAT 1 cut(s) 342
MseI TTAA 2 cut(s) 131, 180
MslI CAYNNNNRTG 1 cut(s) 345
MwoI GCNNNNNNNGC 2 cut(s) 58, 337
NdeII GATC 1 cut(s) 24
NlaIII CATG 1 cut(s) 344
NlaIV GGNNCC 1 cut(s) 93
NsiI ATGCAT 1 cut(s) 342
NspI RCATGY 1 cut(s) 344
PceI AGGCCT 1 cut(s) 264
PfeI GAWTC 1 cut(s) 220
PpuMI RGGWCCY 1 cut(s) 91
Psp5II RGGWCCY 1 cut(s) 91
PspN4I GGNNCC 1 cut(s) 93
PspPI GGNCC 2 cut(s) 91, 139
PspPPI RGGWCCY 1 cut(s) 91
RseI CAYNNNNRTG 1 cut(s) 345
SaqAI TTAA 2 cut(s) 131, 180
Sau3AI GATC 1 cut(s) 24
Sau96I GGNCC 2 cut(s) 91, 139
SetI ASST 5 cut(s) 12, 74, 93, 127, 371
SfaNI GCATC 2 cut(s) 38, 70
SinI GGWCC 1 cut(s) 91
SmiMI CAYNNNNRTG 1 cut(s) 345
SseBI AGGCCT 1 cut(s) 264
SspMI CTAG 1 cut(s) 370
StuI AGGCCT 1 cut(s) 264
TaaI ACNGT 1 cut(s) 362
TfiI GAWTC 1 cut(s) 220
Tru1I TTAA 2 cut(s) 131, 180
Tru9I TTAA 2 cut(s) 131, 180
VpaK11BI GGWCC 1 cut(s) 91
XceI RCATGY 1 cut(s) 344
XspI CTAG 1 cut(s) 370
Zsp2I ATGCAT 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.