FvH4_1g26230

Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0013569
Physical Location & Seq
Forward (+)
18063501 .. 18065239
1739 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g26230.t3

Sequence Viewer

Length: 645 bp
ATGGCACCCAGAAAGAAACATGGGAATAACAACACCGTCCGCCCTTCCAAGTCTGGCTTCGACCCTCAACACCAACTCCAAGATTTCTACGAAGGGGAACGTCTCGATCTTCTTCTCCGATCCATGCAGAGAAAAATAGAGTCAGCTAGAGTAATGGATAATTCTTTGCCTGAAAAGATATGGTTCAAGCTCCAATTTGCGGTTGGGGTGAATGATGTGACTCGTGTTCTTGAGCGCATGAAACCAGTGACATTACCAATGGCGGCAAGCTTAGAATCCGAGAGTAGTTCCGCCGCTCCTCCTCCGAAAGCTAAAGCAGCATCAAATGCCAATGTCACTGAGCTGCAGGCTGTGCTGATAGCTGCTGATTCCAACCCGCGGTGGCTCACGAAACATCTGCCAAGCTTAGCCCTTTCGAGGAATGTCCCGTTGATCTTTCTAAAAGATAACAAGGGGGCTTCCTTAAGATTGGGTCAGCTTGTTAAACTTAAAACTGCTATTGCTATTGGAGTTAAGGCCAAAGGAAATGTCATCAATCAATTAGTTGATGAAATTCTTAGGGGCAGCAGTCAAGGTCATCTTGGAACTGAATGGCTCAATTCAACTCAACTGCTTCCTGCACCAGAGGAGCGAGTCCAGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_L7Ae

Protein Analysis

215

Amino Acids

23.63

Weight (kDa)

10.04

Isoelectric Point (pI)

46.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013569)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01790
fragaria_vesca FvH4_1g26230 FvH4_1g26230 FvH4_1g26230
malus_domestica MD09G1290400.v1.1 MD17G1285100.v1.1
prunus_persica Prupe.3G002600_v2.0.a1
pyrus_communis pycom09g19840
rosa_chinensis RchiOBHm_Chr3g0485771
rosa_laevigata RLG00000023126
rosa_multiflora Rmu_sc0012870.1_g000001
rosa_roxburghii Rroxscaffold_6G00396320
rosa_rugosa Rorug03G0221300
rosa_samantha Rh3AG270600 Rh3BG306100 Rh3CG304500 Rh3DG300600
rosa_wichuraiana Rw3G024100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AccBSI CCGCTC 1 cut(s) 296
AccII CGCG 1 cut(s) 379
AciI CCGC 7 cut(s) 40, 200, 263, 291, 294, 377, 379
AclWI GGATC 1 cut(s) 114
AcsI RAATTY 1 cut(s) 552
AfiI CCNNNNNNNGG 3 cut(s) 199, 378, 417
AflII CTTAAG 1 cut(s) 463
AgsI TTSAA 2 cut(s) 187, 603
AjuI GAANNNNNNNTTGG 2 cut(s) 41, 73
AluBI AGCT 8 cut(s) 146, 190, 270, 311, 343, 362, 405, 478
AluI AGCT 8 cut(s) 146, 190, 270, 311, 343, 362, 405, 478
Alw26I GTCTC 1 cut(s) 107
AlwI GGATC 1 cut(s) 114
AoxI GGCC 1 cut(s) 516
ApeKI GCWGC 4 cut(s) 317, 343, 362, 564
ApoI RAATTY 1 cut(s) 552
ArsI GACNNNNNNTTYG 2 cut(s) 513, 545
AspLEI GCGC 1 cut(s) 237
AsuHPI GGTGA 1 cut(s) 220
BanI GGYRCC 1 cut(s) 4
BauI CACGAG 1 cut(s) 222
BbvI GCAGC 4 cut(s) 329, 330, 349, 576
BcgI CGANNNNNNTGC 2 cut(s) 379, 413
BcoDI GTCTC 1 cut(s) 107
BfaI CTAG 1 cut(s) 147
BfmI CTRYAG 1 cut(s) 344
BfrI CTTAAG 1 cut(s) 463
BisI GCNGC 6 cut(s) 264, 294, 318, 344, 363, 565
BlpI GCTNAGC 1 cut(s) 406
BlsI GCNGC 6 cut(s) 265, 295, 319, 345, 364, 566
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 1 cut(s) 329
Bpu1102I GCTNAGC 1 cut(s) 406
BpuEI CTTGAG 1 cut(s) 251
BsaJI CCNNGG 1 cut(s) 377
BsaXI ACNNNNNCTCC 2 cut(s) 60, 90
Bsc4I CCNNNNNNNGG 3 cut(s) 199, 378, 417
Bse1I ACTGG 1 cut(s) 245
BseDI CCNNGG 1 cut(s) 377
BseLI CCNNNNNNNGG 3 cut(s) 199, 378, 417
BseMII CTCAG 1 cut(s) 330
BseNI ACTGG 1 cut(s) 245
BseRI GAGGAG 3 cut(s) 288, 291, 641
BseXI GCAGC 4 cut(s) 329, 330, 349, 576
BsgI GTGCAG 1 cut(s) 603
Bsh1236I CGCG 1 cut(s) 379
BshFI GGCC 1 cut(s) 518
BshNI GGYRCC 1 cut(s) 4
BslFI GGGAC 1 cut(s) 410
BslI CCNNNNNNNGG 3 cut(s) 199, 378, 417
BsmAI GTCTC 1 cut(s) 107
BsmBI CGTCTC 1 cut(s) 107
BsmFI GGGAC 1 cut(s) 410
BsnI GGCC 1 cut(s) 518
Bsp143I GATC 3 cut(s) 106, 119, 432
Bsp1720I GCTNAGC 1 cut(s) 406
BspACI CCGC 7 cut(s) 40, 200, 263, 291, 294, 377, 379
BspANI GGCC 1 cut(s) 518
BspCNI CTCAG 1 cut(s) 331
BspFNI CGCG 1 cut(s) 379
BspLI GGNNCC 1 cut(s) 6
BspMAI CTGCAG 1 cut(s) 348
BspPI GGATC 1 cut(s) 114
BspT107I GGYRCC 1 cut(s) 4
BspTI CTTAAG 1 cut(s) 463
BsrBI CCGCTC 1 cut(s) 296
BsrI ACTGG 1 cut(s) 245
BssECI CCNNGG 1 cut(s) 377
BssMI GATC 3 cut(s) 106, 119, 432
BssSI CACGAG 1 cut(s) 222
Bst2BI CACGAG 1 cut(s) 222
Bst4CI ACNGT 1 cut(s) 37
BstAFI CTTAAG 1 cut(s) 463
BstAPI GCANNNNNTGC 2 cut(s) 326, 352
BstC8I GCNNGC 2 cut(s) 268, 348
BstDEI CTNAG 4 cut(s) 271, 339, 406, 557
BstDSI CCRYGG 1 cut(s) 377
BstFNI CGCG 1 cut(s) 379
BstHHI GCGC 1 cut(s) 237
BstKTI GATC 3 cut(s) 109, 122, 435
BstMAI GTCTC 1 cut(s) 107
BstMBI GATC 3 cut(s) 106, 119, 432
BstMWI GCNNNNNNNGC 3 cut(s) 317, 326, 352
BstSFI CTRYAG 1 cut(s) 344
BstUI CGCG 1 cut(s) 379
BstV1I GCAGC 4 cut(s) 329, 330, 349, 576
BsuRI GGCC 1 cut(s) 518
BtgI CCRYGG 1 cut(s) 377
BtsIMutI CAGTG 2 cut(s) 252, 336
Cac8I GCNNGC 2 cut(s) 268, 348
CfoI GCGC 1 cut(s) 237
Cfr42I CCGCGG 1 cut(s) 380
CviAII CATG 3 cut(s) 20, 124, 238
DdeI CTNAG 4 cut(s) 271, 339, 406, 557
DpnI GATC 3 cut(s) 108, 121, 434
DpnII GATC 3 cut(s) 106, 119, 432
EciI GGCGGA 2 cut(s) 29, 280
Esp3I CGTCTC 1 cut(s) 107
FaeI CATG 3 cut(s) 23, 127, 241
FaiI YATR 4 cut(s) 21, 125, 181, 239
FalI AAGNNNNNCTT 4 cut(s) 41, 73, 564, 596
FaqI GGGAC 1 cut(s) 410
FatI CATG 3 cut(s) 19, 123, 237
FauI CCCGC 1 cut(s) 384
Fnu4HI GCNGC 6 cut(s) 264, 294, 318, 344, 363, 565
Fsp4HI GCNGC 6 cut(s) 264, 294, 318, 344, 363, 565
FspBI CTAG 1 cut(s) 147
GlaI GCGC 1 cut(s) 236
GluI GCNGC 6 cut(s) 264, 294, 318, 344, 363, 565
HaeIII GGCC 1 cut(s) 518
HhaI GCGC 1 cut(s) 237
Hin1II CATG 3 cut(s) 23, 127, 241
Hin6I GCGC 1 cut(s) 235
HinP1I GCGC 1 cut(s) 235
HindIII AAGCTT 2 cut(s) 268, 403
HinfI GANTC 5 cut(s) 140, 220, 275, 368, 633
HphI GGTGA 1 cut(s) 220
Hpy188I TCNGA 3 cut(s) 119, 280, 306
Hpy188III TCNNGA 4 cut(s) 104, 230, 388, 637
HpyAV CCTTC 2 cut(s) 54, 86
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4IV ACGT 1 cut(s) 100
HpyCH4V TGCA 3 cut(s) 127, 346, 620
HpyF10VI GCNNNNNNNGC 3 cut(s) 317, 326, 352
HpyF3I CTNAG 4 cut(s) 271, 339, 406, 557
HpySE526I ACGT 1 cut(s) 100
Hsp92II CATG 3 cut(s) 23, 127, 241
HspAI GCGC 1 cut(s) 235
KspI CCGCGG 1 cut(s) 380
Kzo9I GATC 3 cut(s) 106, 119, 432
LmnI GCTCC 3 cut(s) 195, 301, 628
LpnPI CCDG 7 cut(s) 22, 39, 183, 258, 332, 630, 636
Lsp1109I GCAGC 4 cut(s) 329, 330, 349, 576
LweI GCATC 1 cut(s) 329
MaeI CTAG 1 cut(s) 147
MaeII ACGT 1 cut(s) 100
MaeIII GTNAC 3 cut(s) 217, 247, 334
MalI GATC 3 cut(s) 108, 121, 434
MbiI CCGCTC 1 cut(s) 296
MboI GATC 3 cut(s) 106, 119, 432
MboII GAAGA 2 cut(s) 101, 104
MluCI AATT 5 cut(s) 160, 194, 539, 552, 598
MlyI GAGTC 3 cut(s) 149, 214, 642
MmeI TCCRAC 1 cut(s) 396
MnlI CCTC 5 cut(s) 75, 309, 312, 411, 619
MseI TTAA 4 cut(s) 464, 483, 489, 513
MspA1I CMGCKG 1 cut(s) 379
MspCI CTTAAG 1 cut(s) 463
MvnI CGCG 1 cut(s) 379
MwoI GCNNNNNNNGC 3 cut(s) 317, 326, 352
NdeII GATC 3 cut(s) 106, 119, 432
NlaIII CATG 3 cut(s) 23, 127, 241
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 3 cut(s) 217, 247, 334
PfeI GAWTC 2 cut(s) 275, 368
PkrI GCNGC 6 cut(s) 265, 295, 319, 345, 364, 566
PleI GAGTC 3 cut(s) 148, 214, 641
PpsI GAGTC 3 cut(s) 148, 214, 641
PspN4I GGNNCC 1 cut(s) 6
PstI CTGCAG 1 cut(s) 348
SacII CCGCGG 1 cut(s) 380
SaqAI TTAA 4 cut(s) 464, 483, 489, 513
SatI GCNGC 6 cut(s) 264, 294, 318, 344, 363, 565
Sau3AI GATC 3 cut(s) 106, 119, 432
SchI GAGTC 3 cut(s) 149, 214, 642
SfaNI GCATC 1 cut(s) 329
SfcI CTRYAG 1 cut(s) 344
Sfr303I CCGCGG 1 cut(s) 380
SgrBI CCGCGG 1 cut(s) 380
SmlI CTYRAG 2 cut(s) 230, 463
SmoI CTYRAG 2 cut(s) 230, 463
Sse9I AATT 5 cut(s) 160, 194, 539, 552, 598
SsiI CCGC 7 cut(s) 40, 200, 263, 291, 294, 377, 379
SspMI CTAG 1 cut(s) 147
TaaI ACNGT 1 cut(s) 37
TaiI ACGT 1 cut(s) 103
TaqI TCGA 3 cut(s) 60, 105, 416
TasI AATT 5 cut(s) 160, 194, 539, 552, 598
TauI GCSGC 2 cut(s) 266, 296
TfiI GAWTC 2 cut(s) 275, 368
Tru1I TTAA 4 cut(s) 464, 483, 489, 513
Tru9I TTAA 4 cut(s) 464, 483, 489, 513
TscAI CASTG 2 cut(s) 252, 343
TseFI GTSAC 3 cut(s) 217, 247, 334
TseI GCWGC 4 cut(s) 317, 343, 362, 564
Tsp45I GTSAC 3 cut(s) 217, 247, 334
TspDTI ATGAA 2 cut(s) 254, 564
TspRI CASTG 2 cut(s) 252, 343
Vha464I CTTAAG 1 cut(s) 463
XapI RAATTY 1 cut(s) 552
XcmI CCANNNNNNNNNTGG 1 cut(s) 200
XspI CTAG 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.