Rroxscaffold_6G00396320

Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0013569
Physical Location & Seq
Reverse (-)
17754049 .. 17757582
3534 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00396320.1

Sequence Viewer

Length: 645 bp
ATGGCGCCCAGAAAGAAACATGGGAACAACAACTCCGTCCGTCCTTCCAAGTCTGGCCTTCACCCTCAACACCAACCCCAAGATTGCTATGAAGGGGAACGTCTGGATCATCTTCTCCAATCTATTCAGAGAAAAATAGAGTCAGCTAGACTAATGGATAATACCTTGCCTGAAAAGATATGGTTCAAGCTACAATTTGCAGTTGGGGTGAATGATGTGACTCGTGTTCTTGAACGCATGAAACCAGTGACATCACCAATGGCGGCAGGCTTAGCATCCGAGTGTAATCCCCCTGCTCCTCCTCCTCCTCCTAAAGCTAAAGCAGCATCTAATGCCAATGCCACTGCGCTTCAGGCTGTGCTGATAGCCGCTGATTCCAACCCACGGTGGCTCACGAAACATCTGCCAAGCTTGGCCCTTTCTAGGAATGTCCCGTTGATCTTTCTCAAGGATAACAAGGGGGGCTTCTTTAAGATTGGAGTCCTTGTTCGTTCCAAATCCACCACAGCAATAAATGTCAATAATGCAAGAAATCTATTGAACAGCATCTTGGACTCAATTGGCAAGTCCTCAACTCTAAAAGCTCTCATTAAACCCTACAAGTTGCAATACCAAGTGTTTTTAGCAAGCCTGGTGCAACATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_L7Ae

Protein Analysis

214

Amino Acids

23.52

Weight (kDa)

10.21

Isoelectric Point (pI)

45.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013569)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01790
fragaria_vesca FvH4_1g26230 FvH4_1g26230 FvH4_1g26230
malus_domestica MD09G1290400.v1.1 MD17G1285100.v1.1
prunus_persica Prupe.3G002600_v2.0.a1
pyrus_communis pycom09g19840
rosa_chinensis RchiOBHm_Chr3g0485771
rosa_laevigata RLG00000023126
rosa_multiflora Rmu_sc0012870.1_g000001
rosa_roxburghii Rroxscaffold_6G00396320
rosa_rugosa Rorug03G0221300
rosa_samantha Rh3AG270600 Rh3BG306100 Rh3CG304500 Rh3DG300600
rosa_wichuraiana Rw3G024100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AciI CCGC 2 cut(s) 263, 369
AclWI GGATC 1 cut(s) 114
AcuI CTGAAG 1 cut(s) 335
AcyI GRCGYC 1 cut(s) 5
AfiI CCNNNNNNNGG 2 cut(s) 384, 423
AgsI TTSAA 3 cut(s) 187, 233, 541
AjnI CCWGG 1 cut(s) 630
AjuI GAANNNNNNNTTGG 2 cut(s) 533, 565
AloI GAACNNNNNNTCC 4 cut(s) 17, 49, 471, 503
AluBI AGCT 5 cut(s) 146, 190, 317, 411, 584
AluI AGCT 5 cut(s) 146, 190, 317, 411, 584
AlwI GGATC 1 cut(s) 114
AoxI GGCC 2 cut(s) 55, 414
ApeKI GCWGC 1 cut(s) 323
AspLEI GCGC 2 cut(s) 7, 349
AspS9I GGNCC 1 cut(s) 415
AsuHPI GGTGA 3 cut(s) 53, 220, 246
BanI GGYRCC 1 cut(s) 4
BauI CACGAG 1 cut(s) 222
BbvI GCAGC 1 cut(s) 335
BcgI CGANNNNNNTGC 2 cut(s) 385, 419
BciT130I CCWGG 1 cut(s) 632
BfaI CTAG 2 cut(s) 147, 423
BfoI RGCGCY 1 cut(s) 8
BisI GCNGC 3 cut(s) 264, 324, 369
BlpI GCTNAGC 1 cut(s) 271
BlsI GCNGC 3 cut(s) 265, 325, 370
Bme1390I CCNGG 1 cut(s) 632
BmgT120I GGNCC 1 cut(s) 415
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 632
BmsI GCATC 3 cut(s) 284, 335, 555
Bpu1102I GCTNAGC 1 cut(s) 271
BpuEI CTTGAG 1 cut(s) 431
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 383
BsaXI ACNNNNNCTCC 4 cut(s) 17, 47, 471, 501
Bsc4I CCNNNNNNNGG 2 cut(s) 384, 423
Bse1I ACTGG 1 cut(s) 245
BseBI CCWGG 1 cut(s) 632
BseDI CCNNGG 1 cut(s) 383
BseGI GGATG 1 cut(s) 275
BseLI CCNNNNNNNGG 2 cut(s) 384, 423
BseNI ACTGG 1 cut(s) 245
BseRI GAGGAG 4 cut(s) 288, 291, 294, 297
BseXI GCAGC 1 cut(s) 335
BshFI GGCC 2 cut(s) 57, 416
BshNI GGYRCC 1 cut(s) 4
BslFI GGGAC 1 cut(s) 416
BslI CCNNNNNNNGG 2 cut(s) 384, 423
BsmFI GGGAC 1 cut(s) 416
BsnI GGCC 2 cut(s) 57, 416
Bsp143I GATC 2 cut(s) 106, 438
Bsp1720I GCTNAGC 1 cut(s) 271
BspACI CCGC 2 cut(s) 263, 369
BspANI GGCC 2 cut(s) 57, 416
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 114
BspT107I GGYRCC 1 cut(s) 4
BsrI ACTGG 1 cut(s) 245
BssECI CCNNGG 1 cut(s) 383
BssMI GATC 2 cut(s) 106, 438
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 222
Bst2BI CACGAG 1 cut(s) 222
Bst2UI CCWGG 1 cut(s) 632
Bst4CI ACNGT 1 cut(s) 387
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 332
BstC8I GCNNGC 2 cut(s) 268, 628
BstDEI CTNAG 1 cut(s) 271
BstDSI CCRYGG 1 cut(s) 383
BstF5I GGATG 1 cut(s) 275
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 349
BstKTI GATC 2 cut(s) 109, 441
BstMBI GATC 2 cut(s) 106, 438
BstMWI GCNNNNNNNGC 4 cut(s) 272, 323, 332, 353
BstNI CCWGG 1 cut(s) 632
BstSCI CCNGG 1 cut(s) 630
BstV1I GCAGC 1 cut(s) 335
BsuRI GGCC 2 cut(s) 57, 416
BtgI CCRYGG 1 cut(s) 383
BtsCI GGATG 1 cut(s) 275
BtsI GCAGTG 1 cut(s) 342
BtsIMutI CAGTG 2 cut(s) 252, 342
Cac8I GCNNGC 2 cut(s) 268, 628
CfoI GCGC 2 cut(s) 7, 349
Cfr13I GGNCC 1 cut(s) 415
CviAII CATG 2 cut(s) 20, 238
DdeI CTNAG 1 cut(s) 271
DinI GGCGCC 1 cut(s) 6
DpnI GATC 2 cut(s) 108, 440
DpnII GATC 2 cut(s) 106, 438
Eco57I CTGAAG 1 cut(s) 335
EcoRII CCWGG 1 cut(s) 630
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
FaeI CATG 2 cut(s) 23, 241
FaiI YATR 4 cut(s) 21, 90, 181, 239
FalI AAGNNNNNCTT 2 cut(s) 449, 481
FaqI GGGAC 1 cut(s) 416
FatI CATG 2 cut(s) 19, 237
Fnu4HI GCNGC 3 cut(s) 264, 324, 369
FokI GGATG 1 cut(s) 262
Fsp4HI GCNGC 3 cut(s) 264, 324, 369
FspBI CTAG 2 cut(s) 147, 423
GlaI GCGC 2 cut(s) 6, 348
GluI GCNGC 3 cut(s) 264, 324, 369
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 2 cut(s) 57, 416
HhaI GCGC 2 cut(s) 7, 349
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 2 cut(s) 23, 241
Hin6I GCGC 2 cut(s) 5, 347
HinP1I GCGC 2 cut(s) 5, 347
HindIII AAGCTT 1 cut(s) 409
HinfI GANTC 5 cut(s) 140, 220, 374, 480, 554
HphI GGTGA 3 cut(s) 53, 220, 246
Hpy188I TCNGA 2 cut(s) 129, 280
Hpy188III TCNNGA 3 cut(s) 104, 230, 394
HpyAV CCTTC 3 cut(s) 54, 68, 86
HpyCH4III ACNGT 1 cut(s) 387
HpyCH4IV ACGT 1 cut(s) 100
HpyCH4V TGCA 4 cut(s) 200, 527, 607, 637
HpyF10VI GCNNNNNNNGC 4 cut(s) 272, 323, 332, 353
HpyF3I CTNAG 1 cut(s) 271
HpySE526I ACGT 1 cut(s) 100
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 2 cut(s) 23, 241
HspAI GCGC 2 cut(s) 5, 347
KasI GGCGCC 1 cut(s) 4
Kzo9I GATC 2 cut(s) 106, 438
LmnI GCTCC 1 cut(s) 301
LpnPI CCDG 9 cut(s) 22, 39, 89, 183, 252, 258, 306, 338, 617
Lsp1109I GCAGC 1 cut(s) 335
LweI GCATC 3 cut(s) 284, 335, 555
MaeI CTAG 2 cut(s) 147, 423
MaeII ACGT 1 cut(s) 100
MaeIII GTNAC 2 cut(s) 217, 247
MalI GATC 2 cut(s) 108, 440
MboI GATC 2 cut(s) 106, 438
MboII GAAGA 1 cut(s) 104
MfeI CAATTG 1 cut(s) 558
MluCI AATT 2 cut(s) 194, 558
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 4 cut(s) 149, 214, 489, 548
MmeI TCCRAC 1 cut(s) 402
MnlI CCTC 6 cut(s) 75, 309, 312, 315, 318, 580
MseI TTAA 2 cut(s) 471, 591
MslI CAYNNNNRTG 1 cut(s) 280
MspA1I CMGCKG 1 cut(s) 371
MspR9I CCNGG 1 cut(s) 632
MunI CAATTG 1 cut(s) 558
MvaI CCWGG 1 cut(s) 632
MwoI GCNNNNNNNGC 4 cut(s) 272, 323, 332, 353
NarI GGCGCC 1 cut(s) 5
NdeII GATC 2 cut(s) 106, 438
NlaIII CATG 2 cut(s) 23, 241
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 2 cut(s) 217, 247
PfeI GAWTC 1 cut(s) 374
PkrI GCNGC 3 cut(s) 265, 325, 370
PleI GAGTC 4 cut(s) 148, 214, 488, 548
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 4 cut(s) 148, 214, 488, 548
Psp6I CCWGG 1 cut(s) 630
PspGI CCWGG 1 cut(s) 630
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 415
RseI CAYNNNNRTG 1 cut(s) 280
SaqAI TTAA 2 cut(s) 471, 591
SatI GCNGC 3 cut(s) 264, 324, 369
Sau3AI GATC 2 cut(s) 106, 438
Sau96I GGNCC 1 cut(s) 415
SchI GAGTC 4 cut(s) 149, 214, 489, 548
ScrFI CCNGG 1 cut(s) 632
SetI ASST 7 cut(s) 103, 148, 167, 192, 319, 413, 586
SfaNI GCATC 3 cut(s) 284, 335, 555
SfoI GGCGCC 1 cut(s) 6
SmiMI CAYNNNNRTG 1 cut(s) 280
SmlI CTYRAG 1 cut(s) 446
SmoI CTYRAG 1 cut(s) 446
Sse9I AATT 2 cut(s) 194, 558
SsiI CCGC 2 cut(s) 263, 369
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 2 cut(s) 147, 423
StyD4I CCNGG 1 cut(s) 630
TaaI ACNGT 1 cut(s) 387
TaiI ACGT 1 cut(s) 103
TasI AATT 2 cut(s) 194, 558
TauI GCSGC 2 cut(s) 266, 371
TfiI GAWTC 1 cut(s) 374
Tru1I TTAA 2 cut(s) 471, 591
Tru9I TTAA 2 cut(s) 471, 591
TscAI CASTG 2 cut(s) 252, 349
TseFI GTSAC 2 cut(s) 217, 247
TseI GCWGC 1 cut(s) 323
Tsp45I GTSAC 2 cut(s) 217, 247
TspDTI ATGAA 2 cut(s) 105, 254
TspGWI ACGGA 2 cut(s) 25, 29
TspRI CASTG 2 cut(s) 252, 349
XspI CTAG 2 cut(s) 147, 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.