Rh3DG300600

Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0013569
Physical Location & Seq
Forward (+)
31673219 .. 31674204
986 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG300600.1

Sequence Viewer

Length: 726 bp
ATGGCGCCCAGAAAGAAACATGGGAACAACAACTCCGTCCGTCCTTCCAAGTCTGGCCTTCACCCTCAACACCAACCCCAAGATTGCTATGAAGGGGAACGTCTGGATCATCTTCTCCAATGTATTCAGAGGTTAGTAGGTTACTTTATGTTTGAGTATATAGATTTAAGTTTCATTGGTGAATTAACTTGCTATACATTTATGTTGTACAGAAAAATTGAGTCAGCTAGACTAATGGATAATACCTTGCCTGAAAAGATATGGTTCAAGCTACAATTTGCAGTTGGGGTGAATGATGTGACTCGTGTTCTTGAACGCATGAAACCAGTGACATCACCAATGGCGGCAGGCTTAGCATCCGAGTGTAATCCCCCTGCTCCTCCTCCTAAAGCTAAAGCAGCATCTAATGCCAATGCCACTGCGCTTCAGGCTGTGCTGATAGCCGCTGATTCCAACCCGCGGTGGCTCACGAAACATCTGCCAAGCTTGGCCCTTTCTAGGAATGTCCCGTTGATCTTTCTCAAGGATAACAAGGGGGCTTCTTTAAGATTGGGTCAGCTTGTTAAACTTAAAACTGCCATTGCTATTGGAGTTAAGGCCAAAGGAAATGCCATCAATCAACTTGTTGACGAAATTCTTAGTGGCAGCAGTCAAGGTCATCTTGGAACCGAATGTCTCGATTCAATTCAACTGTTTCCTGCACCTAAAGGGCAAGTGCAGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_L7Ae

Protein Analysis

241

Amino Acids

26.52

Weight (kDa)

9.49

Isoelectric Point (pI)

39.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013569)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01790
fragaria_vesca FvH4_1g26230 FvH4_1g26230 FvH4_1g26230
malus_domestica MD09G1290400.v1.1 MD17G1285100.v1.1
prunus_persica Prupe.3G002600_v2.0.a1
pyrus_communis pycom09g19840
rosa_chinensis RchiOBHm_Chr3g0485771
rosa_laevigata RLG00000023126
rosa_multiflora Rmu_sc0012870.1_g000001
rosa_roxburghii Rroxscaffold_6G00396320
rosa_rugosa Rorug03G0221300
rosa_samantha Rh3AG270600 Rh3BG306100 Rh3CG304500 Rh3DG300600
rosa_wichuraiana Rw3G024100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AccII CGCG 1 cut(s) 460
AciI CCGC 4 cut(s) 344, 444, 458, 460
AclWI GGATC 1 cut(s) 114
AcsI RAATTY 1 cut(s) 633
AcuI CTGAAG 1 cut(s) 410
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 209
AfiI CCNNNNNNNGG 2 cut(s) 459, 498
AgsI TTSAA 4 cut(s) 268, 314, 684, 689
AloI GAACNNNNNNTCC 2 cut(s) 17, 49
AluBI AGCT 5 cut(s) 227, 271, 392, 486, 559
AluI AGCT 5 cut(s) 227, 271, 392, 486, 559
Alw26I GTCTC 1 cut(s) 680
AlwI GGATC 1 cut(s) 114
AoxI GGCC 3 cut(s) 55, 489, 597
ApeKI GCWGC 2 cut(s) 398, 645
ApoI RAATTY 1 cut(s) 633
AspLEI GCGC 2 cut(s) 7, 424
AspS9I GGNCC 1 cut(s) 490
AsuHPI GGTGA 4 cut(s) 53, 191, 301, 327
BanI GGYRCC 1 cut(s) 4
BauI CACGAG 1 cut(s) 303
BbvI GCAGC 2 cut(s) 410, 657
BccI CCATC 1 cut(s) 620
BcgI CGANNNNNNTGC 2 cut(s) 460, 494
BcoDI GTCTC 1 cut(s) 680
BfaI CTAG 2 cut(s) 228, 498
BfoI RGCGCY 1 cut(s) 8
BisI GCNGC 4 cut(s) 345, 399, 444, 646
BlpI GCTNAGC 1 cut(s) 352
BlsI GCNGC 4 cut(s) 346, 400, 445, 647
BmgT120I GGNCC 1 cut(s) 490
BmiI GGNNCC 2 cut(s) 6, 667
BmsI GCATC 2 cut(s) 365, 410
Bpu1102I GCTNAGC 1 cut(s) 352
BpuEI CTTGAG 1 cut(s) 506
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 458
BsaXI ACNNNNNCTCC 2 cut(s) 17, 47
Bsc4I CCNNNNNNNGG 2 cut(s) 459, 498
Bse1I ACTGG 1 cut(s) 326
Bse3DI GCAATG 1 cut(s) 579
BseDI CCNNGG 1 cut(s) 458
BseGI GGATG 1 cut(s) 356
BseLI CCNNNNNNNGG 2 cut(s) 459, 498
BseMI GCAATG 1 cut(s) 579
BseNI ACTGG 1 cut(s) 326
BseRI GAGGAG 2 cut(s) 369, 372
BseXI GCAGC 2 cut(s) 410, 657
BsgI GTGCAG 1 cut(s) 684
Bsh1236I CGCG 1 cut(s) 460
BshFI GGCC 3 cut(s) 57, 491, 599
BshNI GGYRCC 1 cut(s) 4
BslFI GGGAC 1 cut(s) 491
BslI CCNNNNNNNGG 2 cut(s) 459, 498
BsmAI GTCTC 1 cut(s) 680
BsmFI GGGAC 1 cut(s) 491
BsnI GGCC 3 cut(s) 57, 491, 599
Bsp1407I TGTACA 1 cut(s) 207
Bsp143I GATC 2 cut(s) 106, 513
Bsp1720I GCTNAGC 1 cut(s) 352
BspACI CCGC 4 cut(s) 344, 444, 458, 460
BspANI GGCC 3 cut(s) 57, 491, 599
BspFNI CGCG 1 cut(s) 460
BspLI GGNNCC 2 cut(s) 6, 667
BspPI GGATC 1 cut(s) 114
BspT107I GGYRCC 1 cut(s) 4
BsrDI GCAATG 1 cut(s) 579
BsrGI TGTACA 1 cut(s) 207
BsrI ACTGG 1 cut(s) 326
BssECI CCNNGG 1 cut(s) 458
BssMI GATC 2 cut(s) 106, 513
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 303
Bst2BI CACGAG 1 cut(s) 303
Bst4CI ACNGT 1 cut(s) 693
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 407
BstAUI TGTACA 1 cut(s) 207
BstC8I GCNNGC 1 cut(s) 349
BstDEI CTNAG 2 cut(s) 352, 638
BstDSI CCRYGG 1 cut(s) 458
BstF5I GGATG 1 cut(s) 356
BstFNI CGCG 1 cut(s) 460
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 424
BstKTI GATC 2 cut(s) 109, 516
BstMAI GTCTC 1 cut(s) 680
BstMBI GATC 2 cut(s) 106, 513
BstMWI GCNNNNNNNGC 4 cut(s) 353, 398, 407, 428
BstUI CGCG 1 cut(s) 460
BstV1I GCAGC 2 cut(s) 410, 657
BsuRI GGCC 3 cut(s) 57, 491, 599
BtgI CCRYGG 1 cut(s) 458
BtsCI GGATG 1 cut(s) 356
BtsI GCAGTG 1 cut(s) 417
BtsIMutI CAGTG 2 cut(s) 333, 417
Cac8I GCNNGC 1 cut(s) 349
CfoI GCGC 2 cut(s) 7, 424
Cfr13I GGNCC 1 cut(s) 490
Cfr42I CCGCGG 1 cut(s) 461
Csp6I GTAC 1 cut(s) 208
CviAII CATG 2 cut(s) 20, 319
CviQI GTAC 1 cut(s) 208
DdeI CTNAG 2 cut(s) 352, 638
DinI GGCGCC 1 cut(s) 6
DpnI GATC 2 cut(s) 108, 515
DpnII GATC 2 cut(s) 106, 513
Eco57I CTGAAG 1 cut(s) 410
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
FaeI CATG 2 cut(s) 23, 322
FaiI YATR 9 cut(s) 21, 90, 149, 159, 161, 195, 203, 262, 320
FalI AAGNNNNNCTT 2 cut(s) 645, 677
FaqI GGGAC 1 cut(s) 491
FatI CATG 2 cut(s) 19, 318
FauI CCCGC 1 cut(s) 465
Fnu4HI GCNGC 4 cut(s) 345, 399, 444, 646
FokI GGATG 1 cut(s) 343
Fsp4HI GCNGC 4 cut(s) 345, 399, 444, 646
FspBI CTAG 2 cut(s) 228, 498
GlaI GCGC 2 cut(s) 6, 423
GluI GCNGC 4 cut(s) 345, 399, 444, 646
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 3 cut(s) 57, 491, 599
HhaI GCGC 2 cut(s) 7, 424
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 2 cut(s) 23, 322
Hin6I GCGC 2 cut(s) 5, 422
HinP1I GCGC 2 cut(s) 5, 422
HincII GTYRAC 1 cut(s) 628
HindII GTYRAC 1 cut(s) 628
HindIII AAGCTT 1 cut(s) 484
HinfI GANTC 4 cut(s) 221, 301, 449, 680
HphI GGTGA 4 cut(s) 53, 191, 301, 327
Hpy166II GTNNAC 1 cut(s) 628
Hpy188I TCNGA 2 cut(s) 129, 361
Hpy188III TCNNGA 4 cut(s) 104, 311, 469, 677
Hpy8I GTNNAC 1 cut(s) 628
HpyAV CCTTC 3 cut(s) 54, 68, 86
HpyCH4III ACNGT 1 cut(s) 693
HpyCH4IV ACGT 1 cut(s) 100
HpyCH4V TGCA 3 cut(s) 281, 701, 718
HpyF10VI GCNNNNNNNGC 4 cut(s) 353, 398, 407, 428
HpyF3I CTNAG 2 cut(s) 352, 638
HpySE526I ACGT 1 cut(s) 100
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 2 cut(s) 23, 322
HspAI GCGC 2 cut(s) 5, 422
KasI GGCGCC 1 cut(s) 4
KspI CCGCGG 1 cut(s) 461
Kzo9I GATC 2 cut(s) 106, 513
LmnI GCTCC 1 cut(s) 382
LpnPI CCDG 9 cut(s) 22, 39, 89, 264, 333, 339, 387, 413, 711
Lsp1109I GCAGC 2 cut(s) 410, 657
LweI GCATC 2 cut(s) 365, 410
MaeI CTAG 2 cut(s) 228, 498
MaeII ACGT 1 cut(s) 100
MaeIII GTNAC 3 cut(s) 140, 298, 328
MalI GATC 2 cut(s) 108, 515
MboI GATC 2 cut(s) 106, 513
MboII GAAGA 1 cut(s) 104
MluCI AATT 5 cut(s) 182, 216, 275, 633, 684
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 2 cut(s) 230, 295
MmeI TCCRAC 1 cut(s) 477
MnlI CCTC 4 cut(s) 75, 123, 390, 393
MseI TTAA 6 cut(s) 167, 185, 545, 564, 570, 594
MslI CAYNNNNRTG 1 cut(s) 361
MspA1I CMGCKG 2 cut(s) 446, 460
MvnI CGCG 1 cut(s) 460
MwoI GCNNNNNNNGC 4 cut(s) 353, 398, 407, 428
NarI GGCGCC 1 cut(s) 5
NdeII GATC 2 cut(s) 106, 513
NlaIII CATG 2 cut(s) 23, 322
NlaIV GGNNCC 2 cut(s) 6, 667
NmuCI GTSAC 2 cut(s) 298, 328
PfeI GAWTC 2 cut(s) 449, 680
PkrI GCNGC 4 cut(s) 346, 400, 445, 647
PleI GAGTC 2 cut(s) 229, 295
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 2 cut(s) 229, 295
PspN4I GGNNCC 2 cut(s) 6, 667
PspPI GGNCC 1 cut(s) 490
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
RseI CAYNNNNRTG 1 cut(s) 361
SacII CCGCGG 1 cut(s) 461
SaqAI TTAA 6 cut(s) 167, 185, 545, 564, 570, 594
SatI GCNGC 4 cut(s) 345, 399, 444, 646
Sau3AI GATC 2 cut(s) 106, 513
Sau96I GGNCC 1 cut(s) 490
SchI GAGTC 2 cut(s) 230, 295
SfaNI GCATC 2 cut(s) 365, 410
SfoI GGCGCC 1 cut(s) 6
Sfr303I CCGCGG 1 cut(s) 461
SgrBI CCGCGG 1 cut(s) 461
SmiMI CAYNNNNRTG 1 cut(s) 361
SmlI CTYRAG 1 cut(s) 521
SmoI CTYRAG 1 cut(s) 521
Sse9I AATT 5 cut(s) 182, 216, 275, 633, 684
SsiI CCGC 4 cut(s) 344, 444, 458, 460
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 2 cut(s) 228, 498
TaaI ACNGT 1 cut(s) 693
TaiI ACGT 1 cut(s) 103
TaqI TCGA 1 cut(s) 678
TasI AATT 5 cut(s) 182, 216, 275, 633, 684
TatI WGTACW 1 cut(s) 207
TauI GCSGC 2 cut(s) 347, 446
TfiI GAWTC 2 cut(s) 449, 680
Tru1I TTAA 6 cut(s) 167, 185, 545, 564, 570, 594
Tru9I TTAA 6 cut(s) 167, 185, 545, 564, 570, 594
TscAI CASTG 2 cut(s) 333, 424
TseFI GTSAC 2 cut(s) 298, 328
TseI GCWGC 2 cut(s) 398, 645
Tsp45I GTSAC 2 cut(s) 298, 328
TspDTI ATGAA 3 cut(s) 105, 163, 335
TspGWI ACGGA 2 cut(s) 25, 29
TspRI CASTG 2 cut(s) 333, 424
XapI RAATTY 1 cut(s) 633
XspI CTAG 2 cut(s) 228, 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.