MD09G1290400.v1.1

Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0013569
Physical Location & Seq
Reverse (-)
37242341 .. 37244756
2416 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1290400.v1.1.491

Sequence Viewer

Length: 582 bp
ATGCCGCCCAGAAACAAAAACTCTCAAGGGCATTCCAAATCTGCCTTTCTCCCTCAAGACCAAGACTTGTATGAAGGGGAACGTCTCGATCGTCTTCTCCAACAAATTCAGAGAAGAATAGAGTCAACAAGACTTGAGGATGGCAAGTCATTACCAGAAAAGATATGGTTCAAGAAACTATTCGCAATAGGGGTGAATGACGTGACTCGCGTGCTTGAACGCATGCCACCAACAGCAAGAGCAAGCAGCTTGGCAGGTAAAGCAGCATGCATTGAGCTTCAGGCTGTTGTGATCGCATATGATTGCAATCCACGATGGCTGTCAAAGCACCTGCCAAGCTTGGCTCTTTCAAGGAAGGTCCCAGTCATCTTTCTCAAAGATAACAAGGGAGCTTCGTTGAGATTGGGTCAACTTTTCAAACTTAAAACAGCCATTGCCATTGGAGTTAAGGCTAAAGGAAATGCCATCAATCTTCTTTTTGAGGAGATTCTTAGTGGTAATACAATGCAACTCGGTGTCGGAAGTGAATGCCTCAACTCTTCTCAAATGCTTACCACAACACAAGGAAAAGTCCAGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_L7Ae

Protein Analysis

194

Amino Acids

21.43

Weight (kDa)

9.92

Isoelectric Point (pI)

51.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L7Ae PF01248 92 - 155 9.2e-06 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013569)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01790
fragaria_vesca FvH4_1g26230 FvH4_1g26230 FvH4_1g26230
malus_domestica MD09G1290400.v1.1 MD17G1285100.v1.1
prunus_persica Prupe.3G002600_v2.0.a1
pyrus_communis pycom09g19840
rosa_chinensis RchiOBHm_Chr3g0485771
rosa_laevigata RLG00000023126
rosa_multiflora Rmu_sc0012870.1_g000001
rosa_roxburghii Rroxscaffold_6G00396320
rosa_rugosa Rorug03G0221300
rosa_samantha Rh3AG270600 Rh3BG306100 Rh3CG304500 Rh3DG300600
rosa_wichuraiana Rw3G024100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 339
Acc36I ACCTGC 2 cut(s) 245, 339
AccII CGCG 1 cut(s) 210
AciI CCGC 1 cut(s) 5
AcsI RAATTY 1 cut(s) 105
AcuI CTGAAG 1 cut(s) 263
AgsI TTSAA 4 cut(s) 172, 218, 351, 418
AjiI CACGTC 1 cut(s) 202
AluBI AGCT 4 cut(s) 249, 277, 339, 392
AluI AGCT 4 cut(s) 249, 277, 339, 392
Alw26I GTCTC 1 cut(s) 89
ApeKI GCWGC 2 cut(s) 246, 263
ApoI RAATTY 1 cut(s) 105
Asp700I GAANNNNTTC 1 cut(s) 179
AspS9I GGNCC 1 cut(s) 358
AsuHPI GGTGA 1 cut(s) 205
AvaII GGWCC 1 cut(s) 358
BbsI GAAGAC 1 cut(s) 86
BbvI GCAGC 2 cut(s) 258, 275
BccI CCATC 3 cut(s) 134, 309, 473
BcoDI GTCTC 1 cut(s) 89
BfuAI ACCTGC 2 cut(s) 245, 339
BisI GCNGC 3 cut(s) 5, 247, 264
BlsI GCNGC 3 cut(s) 6, 248, 265
Bme18I GGWCC 1 cut(s) 358
BmgBI CACGTC 1 cut(s) 202
BmgT120I GGNCC 1 cut(s) 358
BmiI GGNNCC 1 cut(s) 360
BmrI ACTGGG 1 cut(s) 356
BmuI ACTGGG 1 cut(s) 356
BpiI GAAGAC 1 cut(s) 86
BpuEI CTTGAG 3 cut(s) 9, 39, 155
BsaBI GATNNNNATC 1 cut(s) 306
Bse1I ACTGG 1 cut(s) 362
Bse3DI GCAATG 1 cut(s) 432
Bse8I GATNNNNATC 1 cut(s) 306
BseGI GGATG 1 cut(s) 145
BseJI GATNNNNATC 1 cut(s) 306
BseMI GCAATG 1 cut(s) 432
BseNI ACTGG 1 cut(s) 362
BseRI GAGGAG 1 cut(s) 497
BseXI GCAGC 2 cut(s) 258, 275
Bsh1236I CGCG 1 cut(s) 210
Bsh1285I CGRYCG 1 cut(s) 91
BsiEI CGRYCG 1 cut(s) 91
BslFI GGGAC 1 cut(s) 344
BsmAI GTCTC 1 cut(s) 89
BsmBI CGTCTC 1 cut(s) 89
BsmFI GGGAC 1 cut(s) 344
BsmI GAATGC 2 cut(s) 31, 533
Bsp143I GATC 2 cut(s) 88, 291
BspACI CCGC 1 cut(s) 5
BspFNI CGCG 1 cut(s) 210
BspLI GGNNCC 1 cut(s) 360
BspMI ACCTGC 2 cut(s) 245, 339
BsrDI GCAATG 1 cut(s) 432
BsrI ACTGG 1 cut(s) 362
BssMI GATC 2 cut(s) 88, 291
Bst6I CTCTTC 1 cut(s) 544
BstC8I GCNNGC 4 cut(s) 212, 224, 244, 268
BstDEI CTNAG 1 cut(s) 491
BstF5I GGATG 1 cut(s) 145
BstFNI CGCG 1 cut(s) 210
BstKTI GATC 2 cut(s) 91, 294
BstMAI GTCTC 1 cut(s) 89
BstMBI GATC 2 cut(s) 88, 291
BstMCI CGRYCG 1 cut(s) 91
BstMWI GCNNNNNNNGC 2 cut(s) 260, 325
BstNSI RCATGY 2 cut(s) 226, 270
BstUI CGCG 1 cut(s) 210
BstV1I GCAGC 2 cut(s) 258, 275
BstV2I GAAGAC 1 cut(s) 86
BtrI CACGTC 1 cut(s) 202
BtsCI GGATG 1 cut(s) 145
BveI ACCTGC 2 cut(s) 245, 339
Cac8I GCNNGC 4 cut(s) 212, 224, 244, 268
Cfr13I GGNCC 1 cut(s) 358
CviAII CATG 2 cut(s) 223, 267
CviJI RGCY 9 cut(s) 249, 277, 284, 319, 339, 344, 392, 431, 452
CviKI_1 RGCY 9 cut(s) 249, 277, 284, 319, 339, 344, 392, 431, 452
DdeI CTNAG 1 cut(s) 491
DpnI GATC 2 cut(s) 90, 293
DpnII GATC 2 cut(s) 88, 291
Eam1104I CTCTTC 1 cut(s) 544
EarI CTCTTC 1 cut(s) 544
Eco47I GGWCC 1 cut(s) 358
Eco57I CTGAAG 1 cut(s) 263
EcoO109I RGGNCCY 1 cut(s) 358
EcoT22I ATGCAT 1 cut(s) 272
Esp3I CGTCTC 1 cut(s) 89
FaeI CATG 2 cut(s) 226, 270
FaiI YATR 6 cut(s) 72, 166, 224, 268, 298, 300
FaqI GGGAC 1 cut(s) 344
FatI CATG 2 cut(s) 222, 266
FauNDI CATATG 1 cut(s) 298
Fnu4HI GCNGC 3 cut(s) 5, 247, 264
FokI GGATG 1 cut(s) 152
Fsp4HI GCNGC 3 cut(s) 5, 247, 264
GluI GCNGC 3 cut(s) 5, 247, 264
Hin1II CATG 2 cut(s) 226, 270
HincII GTYRAC 2 cut(s) 126, 410
HindII GTYRAC 2 cut(s) 126, 410
HindIII AAGCTT 1 cut(s) 337
HinfI GANTC 3 cut(s) 122, 205, 487
HphI GGTGA 1 cut(s) 205
Hpy166II GTNNAC 2 cut(s) 126, 410
Hpy188I TCNGA 2 cut(s) 111, 521
Hpy188III TCNNGA 4 cut(s) 56, 86, 172, 574
Hpy8I GTNNAC 2 cut(s) 126, 410
HpyAV CCTTC 2 cut(s) 68, 349
HpyCH4IV ACGT 2 cut(s) 82, 201
HpyCH4V TGCA 3 cut(s) 270, 306, 508
HpyF10VI GCNNNNNNNGC 2 cut(s) 260, 325
HpyF3I CTNAG 1 cut(s) 491
HpySE526I ACGT 2 cut(s) 82, 201
Hsp92II CATG 2 cut(s) 226, 270
Kzo9I GATC 2 cut(s) 88, 291
LmnI GCTCC 1 cut(s) 389
LpnPI CCDG 6 cut(s) 22, 168, 240, 266, 344, 375
Lsp1109I GCAGC 2 cut(s) 258, 275
MaeII ACGT 2 cut(s) 82, 201
MaeIII GTNAC 1 cut(s) 202
MalI GATC 2 cut(s) 90, 293
MboI GATC 2 cut(s) 88, 291
MboII GAAGA 4 cut(s) 86, 126, 464, 531
MluCI AATT 1 cut(s) 105
MlyI GAGTC 2 cut(s) 131, 199
MmeI TCCRAC 2 cut(s) 124, 499
MnlI CCTC 4 cut(s) 63, 130, 475, 542
Mph1103I ATGCAT 1 cut(s) 272
MroXI GAANNNNTTC 1 cut(s) 179
MseI TTAA 2 cut(s) 423, 447
Mva1269I GAATGC 2 cut(s) 31, 533
MvnI CGCG 1 cut(s) 210
MwoI GCNNNNNNNGC 2 cut(s) 260, 325
NdeI CATATG 1 cut(s) 298
NdeII GATC 2 cut(s) 88, 291
NlaIII CATG 2 cut(s) 226, 270
NlaIV GGNNCC 1 cut(s) 360
NmuCI GTSAC 1 cut(s) 202
NsiI ATGCAT 1 cut(s) 272
NspI RCATGY 2 cut(s) 226, 270
PaeI GCATGC 2 cut(s) 226, 270
PaqCI CACCTGC 1 cut(s) 339
PcsI WCGNNNNNNNCGW 2 cut(s) 88, 207
PctI GAATGC 2 cut(s) 31, 533
PdmI GAANNNNTTC 1 cut(s) 179
PfeI GAWTC 1 cut(s) 487
PkrI GCNGC 3 cut(s) 6, 248, 265
Ple19I CGATCG 1 cut(s) 91
PleI GAGTC 2 cut(s) 130, 199
PpsI GAGTC 2 cut(s) 130, 199
PpuMI RGGWCCY 1 cut(s) 358
Psp5II RGGWCCY 1 cut(s) 358
PspN4I GGNNCC 1 cut(s) 360
PspPI GGNCC 1 cut(s) 358
PspPPI RGGWCCY 1 cut(s) 358
PvuI CGATCG 1 cut(s) 91
SaqAI TTAA 2 cut(s) 423, 447
SatI GCNGC 3 cut(s) 5, 247, 264
Sau3AI GATC 2 cut(s) 88, 291
Sau96I GGNCC 1 cut(s) 358
SchI GAGTC 2 cut(s) 131, 199
SetI ASST 9 cut(s) 85, 204, 251, 259, 279, 333, 341, 360, 394
SinI GGWCC 1 cut(s) 358
SmlI CTYRAG 3 cut(s) 24, 54, 134
SmoI CTYRAG 3 cut(s) 24, 54, 134
SphI GCATGC 2 cut(s) 226, 270
Sse9I AATT 1 cut(s) 105
SsiI CCGC 1 cut(s) 5
TaiI ACGT 2 cut(s) 85, 204
TaqI TCGA 1 cut(s) 87
TasI AATT 1 cut(s) 105
TauI GCSGC 1 cut(s) 7
TfiI GAWTC 1 cut(s) 487
Tru1I TTAA 2 cut(s) 423, 447
Tru9I TTAA 2 cut(s) 423, 447
TseFI GTSAC 1 cut(s) 202
TseI GCWGC 2 cut(s) 246, 263
Tsp45I GTSAC 1 cut(s) 202
TspDTI ATGAA 1 cut(s) 87
VpaK11BI GGWCC 1 cut(s) 358
XapI RAATTY 1 cut(s) 105
XceI RCATGY 2 cut(s) 226, 270
XcmI CCANNNNNNNNNTGG 1 cut(s) 162
XmnI GAANNNNTTC 1 cut(s) 179
Zsp2I ATGCAT 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.