Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0013569

Physical Location & Seq

Genomic Coordinates Forward (+)

30716455 .. 30717440

Gene Structure 986 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G024100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGCGCCCAGAAAGAAACATGGGAACAACAACTCCGTCCGTCCTTCCAAGTCTGGCCTTCACCCTCAACACCAACCCCAAGATTGCTATGAAGGGGAACGTCTGGATCATCTTCTCCAATCTATTCAGAGAAAAATAGATTCAGCTAGACTTCTGGATAATACCTTACCTGAAAAGATATGGTCCAAGCTACAATTTGCAGTTGGGGTGAATGATGTGACTCGTGTTCTTGAACGCATGAAACCAGTGACATCACCAATGGCGGCAGGCTTAGCATCCGAGTGTAATCCCCCTGCTCCTCCTCCTAAAGCTAAAGCAGCATCTAATGCCAATGCCACTGCGCTTCAGGCTGTGCTGATAGCCGCTGATTCCAACCCGCGGTGGCTCACGAAACATCTGCCAAGCTTGGCCCTTTCTAGGAATGTCCCGCTGATCTTTCTCAAGGATAACAAGGGGGCTTCTTTAAGATTGGGTCAGCTTGTTAAACTTAAAACTGCCATTGCTATTGGAGTTAAGGCCAAAGGAAATGCCATCAATCAACTTGTTGACGAAATTCTTAGTGGCAGCAGTCAAGGTCATCTTGGAACCGAATGTCTCGATTCAACTCAACTGCTTCCTACACCTAAAGGGCAGGTGCAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

214

Amino Acids

23.08

Weight (kDa)

9.93

Isoelectric Point (pI)

44.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01790
fragaria_vesca	FvH4_1g26230 FvH4_1g26230 FvH4_1g26230
malus_domestica	MD09G1290400.v1.1 MD17G1285100.v1.1
prunus_persica	Prupe.3G002600_v2.0.a1
pyrus_communis	pycom09g19840
rosa_chinensis	RchiOBHm_Chr3g0485771
rosa_laevigata	RLG00000023126
rosa_multiflora	Rmu_sc0012870.1_g000001
rosa_roxburghii	Rroxscaffold_6G00396320
rosa_rugosa	Rorug03G0221300
rosa_samantha	Rh3AG270600 Rh3BG306100 Rh3CG304500 Rh3DG300600
rosa_wichuraiana	Rw3G024100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	622
Acc36I	ACCTGC	1 cut(s)	622
AccB1I	GGYRCC	1 cut(s)	4
AccII	CGCG	1 cut(s)	379
AciI	CCGC	5 cut(s)	263, 363, 377, 379, 428
AclWI	GGATC	1 cut(s)	114
AcsI	RAATTY	1 cut(s)	552
AcuI	CTGAAG	1 cut(s)	329
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	2 cut(s)	378, 417
AgsI	TTSAA	2 cut(s)	233, 603
AloI	GAACNNNNNNTCC	2 cut(s)	17, 49
AluBI	AGCT	5 cut(s)	146, 190, 311, 405, 478
AluI	AGCT	5 cut(s)	146, 190, 311, 405, 478
Alw26I	GTCTC	1 cut(s)	599
AlwI	GGATC	1 cut(s)	114
AoxI	GGCC	3 cut(s)	55, 408, 516
ApeKI	GCWGC	2 cut(s)	317, 564
ApoI	RAATTY	1 cut(s)	552
AspLEI	GCGC	2 cut(s)	7, 343
AspS9I	GGNCC	2 cut(s)	183, 409
AsuHPI	GGTGA	3 cut(s)	53, 220, 246
AvaII	GGWCC	1 cut(s)	183
BanI	GGYRCC	1 cut(s)	4
BauI	CACGAG	1 cut(s)	222
BbvI	GCAGC	2 cut(s)	329, 576
BccI	CCATC	1 cut(s)	539
BcgI	CGANNNNNNTGC	2 cut(s)	379, 413
BcoDI	GTCTC	1 cut(s)	599
BfaI	CTAG	2 cut(s)	147, 417
BfoI	RGCGCY	1 cut(s)	8
BfuAI	ACCTGC	1 cut(s)	622
BisI	GCNGC	4 cut(s)	264, 318, 363, 565
BlpI	GCTNAGC	1 cut(s)	271
BlsI	GCNGC	4 cut(s)	265, 319, 364, 566
Bme18I	GGWCC	1 cut(s)	183
BmgT120I	GGNCC	2 cut(s)	183, 409
BmiI	GGNNCC	2 cut(s)	6, 586
BmsI	GCATC	2 cut(s)	284, 329
Bpu1102I	GCTNAGC	1 cut(s)	271
BpuEI	CTTGAG	1 cut(s)	425
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	377
BsaXI	ACNNNNNCTCC	2 cut(s)	17, 47
Bsc4I	CCNNNNNNNGG	2 cut(s)	378, 417
Bse1I	ACTGG	1 cut(s)	245
Bse3DI	GCAATG	1 cut(s)	498
BseDI	CCNNGG	1 cut(s)	377
BseGI	GGATG	1 cut(s)	275
BseLI	CCNNNNNNNGG	2 cut(s)	378, 417
BseMI	GCAATG	1 cut(s)	498
BseNI	ACTGG	1 cut(s)	245
BseRI	GAGGAG	2 cut(s)	288, 291
BseXI	GCAGC	2 cut(s)	329, 576
Bsh1236I	CGCG	1 cut(s)	379
BshFI	GGCC	3 cut(s)	57, 410, 518
BshNI	GGYRCC	1 cut(s)	4
BslFI	GGGAC	1 cut(s)	410
BslI	CCNNNNNNNGG	2 cut(s)	378, 417
BsmAI	GTCTC	1 cut(s)	599
BsmFI	GGGAC	1 cut(s)	410
BsnI	GGCC	3 cut(s)	57, 410, 518
Bsp143I	GATC	2 cut(s)	106, 432
Bsp1720I	GCTNAGC	1 cut(s)	271
BspACI	CCGC	5 cut(s)	263, 363, 377, 379, 428
BspANI	GGCC	3 cut(s)	57, 410, 518
BspFNI	CGCG	1 cut(s)	379
BspLI	GGNNCC	2 cut(s)	6, 586
BspMI	ACCTGC	1 cut(s)	622
BspPI	GGATC	1 cut(s)	114
BspT107I	GGYRCC	1 cut(s)	4
BsrDI	GCAATG	1 cut(s)	498
BsrI	ACTGG	1 cut(s)	245
BssECI	CCNNGG	1 cut(s)	377
BssMI	GATC	2 cut(s)	106, 432
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	222
Bst2BI	CACGAG	1 cut(s)	222
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	326
BstC8I	GCNNGC	1 cut(s)	268
BstDEI	CTNAG	2 cut(s)	271, 557
BstDSI	CCRYGG	1 cut(s)	377
BstF5I	GGATG	1 cut(s)	275
BstFNI	CGCG	1 cut(s)	379
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	7, 343
BstKTI	GATC	2 cut(s)	109, 435
BstMAI	GTCTC	1 cut(s)	599
BstMBI	GATC	2 cut(s)	106, 432
BstMWI	GCNNNNNNNGC	4 cut(s)	272, 317, 326, 347
BstUI	CGCG	1 cut(s)	379
BstV1I	GCAGC	2 cut(s)	329, 576
BsuRI	GGCC	3 cut(s)	57, 410, 518
BtgI	CCRYGG	1 cut(s)	377
BtsCI	GGATG	1 cut(s)	275
BtsI	GCAGTG	1 cut(s)	336
BtsIMutI	CAGTG	2 cut(s)	252, 336
BveI	ACCTGC	1 cut(s)	622
Cac8I	GCNNGC	1 cut(s)	268
CfoI	GCGC	2 cut(s)	7, 343
Cfr13I	GGNCC	2 cut(s)	183, 409
Cfr42I	CCGCGG	1 cut(s)	380
CviAII	CATG	2 cut(s)	20, 238
DdeI	CTNAG	2 cut(s)	271, 557
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	2 cut(s)	108, 434
DpnII	GATC	2 cut(s)	106, 432
Eco47I	GGWCC	1 cut(s)	183
Eco57I	CTGAAG	1 cut(s)	329
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
FaeI	CATG	2 cut(s)	23, 241
FaiI	YATR	4 cut(s)	21, 90, 181, 239
FalI	AAGNNNNNCTT	2 cut(s)	564, 596
FaqI	GGGAC	1 cut(s)	410
FatI	CATG	2 cut(s)	19, 237
FauI	CCCGC	2 cut(s)	384, 435
Fnu4HI	GCNGC	4 cut(s)	264, 318, 363, 565
FokI	GGATG	1 cut(s)	262
Fsp4HI	GCNGC	4 cut(s)	264, 318, 363, 565
FspBI	CTAG	2 cut(s)	147, 417
GlaI	GCGC	2 cut(s)	6, 342
GluI	GCNGC	4 cut(s)	264, 318, 363, 565
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	3 cut(s)	57, 410, 518
HhaI	GCGC	2 cut(s)	7, 343
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	23, 241
Hin6I	GCGC	2 cut(s)	5, 341
HinP1I	GCGC	2 cut(s)	5, 341
HincII	GTYRAC	1 cut(s)	547
HindII	GTYRAC	1 cut(s)	547
HindIII	AAGCTT	1 cut(s)	403
HinfI	GANTC	4 cut(s)	140, 220, 368, 599
HphI	GGTGA	3 cut(s)	53, 220, 246
Hpy166II	GTNNAC	1 cut(s)	547
Hpy188I	TCNGA	2 cut(s)	129, 280
Hpy188III	TCNNGA	5 cut(s)	104, 155, 230, 388, 596
Hpy8I	GTNNAC	1 cut(s)	547
HpyAV	CCTTC	3 cut(s)	54, 68, 86
HpyCH4IV	ACGT	1 cut(s)	100
HpyCH4V	TGCA	2 cut(s)	200, 637
HpyF10VI	GCNNNNNNNGC	4 cut(s)	272, 317, 326, 347
HpyF3I	CTNAG	2 cut(s)	271, 557
HpySE526I	ACGT	1 cut(s)	100
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	23, 241
HspAI	GCGC	2 cut(s)	5, 341
KasI	GGCGCC	1 cut(s)	4
KspI	CCGCGG	1 cut(s)	380
Kzo9I	GATC	2 cut(s)	106, 432
LmnI	GCTCC	1 cut(s)	301
Lsp1109I	GCAGC	2 cut(s)	329, 576
LweI	GCATC	2 cut(s)	284, 329
MaeI	CTAG	2 cut(s)	147, 417
MaeII	ACGT	1 cut(s)	100
MaeIII	GTNAC	2 cut(s)	217, 247
MalI	GATC	2 cut(s)	108, 434
MboI	GATC	2 cut(s)	106, 432
MboII	GAAGA	1 cut(s)	104
MluCI	AATT	2 cut(s)	194, 552
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	214
MmeI	TCCRAC	1 cut(s)	396
MnlI	CCTC	3 cut(s)	75, 309, 312
MseI	TTAA	4 cut(s)	464, 483, 489, 513
MslI	CAYNNNNRTG	1 cut(s)	280
MspA1I	CMGCKG	3 cut(s)	365, 379, 430
MvnI	CGCG	1 cut(s)	379
MwoI	GCNNNNNNNGC	4 cut(s)	272, 317, 326, 347
NarI	GGCGCC	1 cut(s)	5
NdeII	GATC	2 cut(s)	106, 432
NlaIII	CATG	2 cut(s)	23, 241
NlaIV	GGNNCC	2 cut(s)	6, 586
NmuCI	GTSAC	2 cut(s)	217, 247
PaqCI	CACCTGC	1 cut(s)	622
PfeI	GAWTC	3 cut(s)	140, 368, 599
PkrI	GCNGC	4 cut(s)	265, 319, 364, 566
PleI	GAGTC	1 cut(s)	214
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	214
PspN4I	GGNNCC	2 cut(s)	6, 586
PspPI	GGNCC	2 cut(s)	183, 409
RseI	CAYNNNNRTG	1 cut(s)	280
SacII	CCGCGG	1 cut(s)	380
SaqAI	TTAA	4 cut(s)	464, 483, 489, 513
SatI	GCNGC	4 cut(s)	264, 318, 363, 565
Sau3AI	GATC	2 cut(s)	106, 432
Sau96I	GGNCC	2 cut(s)	183, 409
SchI	GAGTC	1 cut(s)	214
SfaNI	GCATC	2 cut(s)	284, 329
SfoI	GGCGCC	1 cut(s)	6
Sfr303I	CCGCGG	1 cut(s)	380
SgrBI	CCGCGG	1 cut(s)	380
SinI	GGWCC	1 cut(s)	183
SmiMI	CAYNNNNRTG	1 cut(s)	280
SmlI	CTYRAG	1 cut(s)	440
SmoI	CTYRAG	1 cut(s)	440
Sse9I	AATT	2 cut(s)	194, 552
SsiI	CCGC	5 cut(s)	263, 363, 377, 379, 428
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	2 cut(s)	147, 417
TaiI	ACGT	1 cut(s)	103
TaqI	TCGA	1 cut(s)	597
TasI	AATT	2 cut(s)	194, 552
TauI	GCSGC	2 cut(s)	266, 365
TfiI	GAWTC	3 cut(s)	140, 368, 599
Tru1I	TTAA	4 cut(s)	464, 483, 489, 513
Tru9I	TTAA	4 cut(s)	464, 483, 489, 513
TscAI	CASTG	2 cut(s)	252, 343
TseFI	GTSAC	2 cut(s)	217, 247
TseI	GCWGC	2 cut(s)	317, 564
Tsp45I	GTSAC	2 cut(s)	217, 247
TspDTI	ATGAA	2 cut(s)	105, 254
TspGWI	ACGGA	2 cut(s)	25, 29
TspRI	CASTG	2 cut(s)	252, 343
VpaK11BI	GGWCC	1 cut(s)	183
XapI	RAATTY	1 cut(s)	552
XspI	CTAG	2 cut(s)	147, 417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.