Rmu_sc0012870.1_g000001

Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012870.1
OG0013569
Physical Location & Seq
Forward (+)
1 .. 1186
1186 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012870.1_g000001.1.cds

Sequence Viewer

Length: 667 bp
agtctgctgcacaaacatggcgcccagaaagaaacatgggaacaacaactccgtccgtccttccaagtctggctttcaccctcaacaccaaccccaagattgctatgaaggggaacgtctggatcatcttctccaatctattcagagaaaaattgactcagctagactaatggataataccttgcctgaaaagatatggttcaagctacaatttgcagttggggtgaatgatgtgactcgtgttcttgaacgcatgaaaccagtgacatcaccaatggcggcaggcttagcatccgagtgtaatccccctgctcctcctcctaaagctaaagcagcatctaatgccaatgccaatgccactgcgcttcaggctgtgctgatagccgctgattccaacccgcggtggctcacgaaacatctgccaagcttggccctttctaggaatgtcccgttgatctttctcaaggataacaagggggcttctttaagattgggtcagcttgttaaacttaaaactgccattgctattggagttaaggccaaaggaaatgccatcaatcaacttgttgacgaaattcttagtggcagcagtcaaggtcatcttggaaccgaatgtctcgattcaattcaactgtttcctgcacctaaagggcaagtgcagagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_L7Ae

Protein Analysis

221

Amino Acids

23.92

Weight (kDa)

9.77

Isoelectric Point (pI)

45.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013569)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01790
fragaria_vesca FvH4_1g26230 FvH4_1g26230 FvH4_1g26230
malus_domestica MD09G1290400.v1.1 MD17G1285100.v1.1
prunus_persica Prupe.3G002600_v2.0.a1
pyrus_communis pycom09g19840
rosa_chinensis RchiOBHm_Chr3g0485771
rosa_laevigata RLG00000023126
rosa_multiflora Rmu_sc0012870.1_g000001
rosa_roxburghii Rroxscaffold_6G00396320
rosa_rugosa Rorug03G0221300
rosa_samantha Rh3AG270600 Rh3BG306100 Rh3CG304500 Rh3DG300600
rosa_wichuraiana Rw3G024100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 20
AccII CGCG 1 cut(s) 401
AciI CCGC 4 cut(s) 279, 385, 399, 401
AclWI GGATC 1 cut(s) 130
AcsI RAATTY 1 cut(s) 574
AcuI CTGAAG 1 cut(s) 351
AcyI GRCGYC 1 cut(s) 21
AfiI CCNNNNNNNGG 2 cut(s) 400, 439
AgsI TTSAA 4 cut(s) 203, 249, 625, 630
AloI GAACNNNNNNTCC 2 cut(s) 33, 65
AluBI AGCT 5 cut(s) 162, 206, 327, 427, 500
AluI AGCT 5 cut(s) 162, 206, 327, 427, 500
Alw26I GTCTC 1 cut(s) 621
AlwI GGATC 1 cut(s) 130
AoxI GGCC 2 cut(s) 430, 538
ApeKI GCWGC 3 cut(s) 7, 333, 586
ApoI RAATTY 1 cut(s) 574
AspLEI GCGC 2 cut(s) 23, 365
AspS9I GGNCC 1 cut(s) 431
AsuHPI GGTGA 3 cut(s) 69, 236, 262
BanI GGYRCC 1 cut(s) 20
BauI CACGAG 1 cut(s) 238
BbvI GCAGC 2 cut(s) 345, 598
BccI CCATC 1 cut(s) 561
BcgI CGANNNNNNTGC 2 cut(s) 401, 435
BcoDI GTCTC 1 cut(s) 621
BfaI CTAG 2 cut(s) 163, 439
BfoI RGCGCY 1 cut(s) 24
BisI GCNGC 5 cut(s) 8, 280, 334, 385, 587
BlpI GCTNAGC 1 cut(s) 287
BlsI GCNGC 5 cut(s) 9, 281, 335, 386, 588
BmgT120I GGNCC 1 cut(s) 431
BmiI GGNNCC 2 cut(s) 22, 608
BmsI GCATC 2 cut(s) 300, 345
Bpu1102I GCTNAGC 1 cut(s) 287
BpuEI CTTGAG 1 cut(s) 447
BsaHI GRCGYC 1 cut(s) 21
BsaJI CCNNGG 1 cut(s) 399
BsaXI ACNNNNNCTCC 2 cut(s) 33, 63
Bsc4I CCNNNNNNNGG 2 cut(s) 400, 439
Bse1I ACTGG 1 cut(s) 261
Bse3DI GCAATG 1 cut(s) 520
BseDI CCNNGG 1 cut(s) 399
BseGI GGATG 1 cut(s) 291
BseLI CCNNNNNNNGG 2 cut(s) 400, 439
BseMI GCAATG 1 cut(s) 520
BseMII CTCAG 1 cut(s) 172
BseNI ACTGG 1 cut(s) 261
BseRI GAGGAG 2 cut(s) 304, 307
BseXI GCAGC 2 cut(s) 345, 598
BsgI GTGCAG 1 cut(s) 625
Bsh1236I CGCG 1 cut(s) 401
BshFI GGCC 2 cut(s) 432, 540
BshNI GGYRCC 1 cut(s) 20
BslFI GGGAC 1 cut(s) 432
BslI CCNNNNNNNGG 2 cut(s) 400, 439
BsmAI GTCTC 1 cut(s) 621
BsmFI GGGAC 1 cut(s) 432
BsnI GGCC 2 cut(s) 432, 540
Bsp143I GATC 2 cut(s) 122, 454
Bsp1720I GCTNAGC 1 cut(s) 287
BspACI CCGC 4 cut(s) 279, 385, 399, 401
BspANI GGCC 2 cut(s) 432, 540
BspCNI CTCAG 1 cut(s) 171
BspFNI CGCG 1 cut(s) 401
BspLI GGNNCC 2 cut(s) 22, 608
BspPI GGATC 1 cut(s) 130
BspT107I GGYRCC 1 cut(s) 20
BsrDI GCAATG 1 cut(s) 520
BsrI ACTGG 1 cut(s) 261
BssECI CCNNGG 1 cut(s) 399
BssMI GATC 2 cut(s) 122, 454
BssNI GRCGYC 1 cut(s) 21
BssSI CACGAG 1 cut(s) 238
Bst2BI CACGAG 1 cut(s) 238
Bst4CI ACNGT 1 cut(s) 634
BstACI GRCGYC 1 cut(s) 21
BstAPI GCANNNNNTGC 1 cut(s) 342
BstC8I GCNNGC 1 cut(s) 284
BstDEI CTNAG 3 cut(s) 158, 287, 579
BstDSI CCRYGG 1 cut(s) 399
BstF5I GGATG 1 cut(s) 291
BstFNI CGCG 1 cut(s) 401
BstH2I RGCGCY 1 cut(s) 24
BstHHI GCGC 2 cut(s) 23, 365
BstKTI GATC 2 cut(s) 125, 457
BstMAI GTCTC 1 cut(s) 621
BstMBI GATC 2 cut(s) 122, 454
BstMWI GCNNNNNNNGC 4 cut(s) 288, 333, 342, 369
BstUI CGCG 1 cut(s) 401
BstV1I GCAGC 2 cut(s) 345, 598
BsuRI GGCC 2 cut(s) 432, 540
BtgI CCRYGG 1 cut(s) 399
BtsCI GGATG 1 cut(s) 291
BtsI GCAGTG 1 cut(s) 358
BtsIMutI CAGTG 2 cut(s) 268, 358
Cac8I GCNNGC 1 cut(s) 284
CfoI GCGC 2 cut(s) 23, 365
Cfr13I GGNCC 1 cut(s) 431
Cfr42I CCGCGG 1 cut(s) 402
CviAII CATG 3 cut(s) 17, 36, 254
DdeI CTNAG 3 cut(s) 158, 287, 579
DinI GGCGCC 1 cut(s) 22
DpnI GATC 2 cut(s) 124, 456
DpnII GATC 2 cut(s) 122, 454
Eco57I CTGAAG 1 cut(s) 351
EgeI GGCGCC 1 cut(s) 22
EheI GGCGCC 1 cut(s) 22
FaeI CATG 3 cut(s) 20, 39, 257
FaiI YATR 5 cut(s) 18, 37, 106, 197, 255
FalI AAGNNNNNCTT 4 cut(s) 57, 89, 586, 618
FaqI GGGAC 1 cut(s) 432
FatI CATG 3 cut(s) 16, 35, 253
FauI CCCGC 1 cut(s) 406
Fnu4HI GCNGC 5 cut(s) 8, 280, 334, 385, 587
FokI GGATG 1 cut(s) 278
Fsp4HI GCNGC 5 cut(s) 8, 280, 334, 385, 587
FspBI CTAG 2 cut(s) 163, 439
GlaI GCGC 2 cut(s) 22, 364
GluI GCNGC 5 cut(s) 8, 280, 334, 385, 587
HaeII RGCGCY 1 cut(s) 24
HaeIII GGCC 2 cut(s) 432, 540
HhaI GCGC 2 cut(s) 23, 365
Hin1I GRCGYC 1 cut(s) 21
Hin1II CATG 3 cut(s) 20, 39, 257
Hin6I GCGC 2 cut(s) 21, 363
HinP1I GCGC 2 cut(s) 21, 363
HincII GTYRAC 1 cut(s) 569
HindII GTYRAC 1 cut(s) 569
HindIII AAGCTT 1 cut(s) 425
HinfI GANTC 4 cut(s) 156, 236, 390, 621
HphI GGTGA 3 cut(s) 69, 236, 262
Hpy166II GTNNAC 1 cut(s) 569
Hpy188I TCNGA 2 cut(s) 145, 296
Hpy188III TCNNGA 4 cut(s) 120, 246, 410, 618
Hpy8I GTNNAC 1 cut(s) 569
HpyAV CCTTC 2 cut(s) 70, 102
HpyCH4III ACNGT 1 cut(s) 634
HpyCH4IV ACGT 1 cut(s) 116
HpyCH4V TGCA 4 cut(s) 10, 216, 642, 659
HpyF10VI GCNNNNNNNGC 4 cut(s) 288, 333, 342, 369
HpyF3I CTNAG 3 cut(s) 158, 287, 579
HpySE526I ACGT 1 cut(s) 116
Hsp92I GRCGYC 1 cut(s) 21
Hsp92II CATG 3 cut(s) 20, 39, 257
HspAI GCGC 2 cut(s) 21, 363
KasI GGCGCC 1 cut(s) 20
KspI CCGCGG 1 cut(s) 402
Kzo9I GATC 2 cut(s) 122, 454
LmnI GCTCC 1 cut(s) 317
LpnPI CCDG 9 cut(s) 38, 55, 105, 199, 268, 274, 322, 354, 652
Lsp1109I GCAGC 2 cut(s) 345, 598
LweI GCATC 2 cut(s) 300, 345
MaeI CTAG 2 cut(s) 163, 439
MaeII ACGT 1 cut(s) 116
MaeIII GTNAC 2 cut(s) 233, 263
MalI GATC 2 cut(s) 124, 456
MboI GATC 2 cut(s) 122, 454
MboII GAAGA 1 cut(s) 120
MluCI AATT 4 cut(s) 151, 210, 574, 625
Mly113I GGCGCC 1 cut(s) 21
MlyI GAGTC 2 cut(s) 150, 230
MmeI TCCRAC 1 cut(s) 418
MnlI CCTC 3 cut(s) 91, 325, 328
MseI TTAA 4 cut(s) 486, 505, 511, 535
MslI CAYNNNNRTG 2 cut(s) 15, 296
MspA1I CMGCKG 2 cut(s) 387, 401
MvnI CGCG 1 cut(s) 401
MwoI GCNNNNNNNGC 4 cut(s) 288, 333, 342, 369
NarI GGCGCC 1 cut(s) 21
NdeII GATC 2 cut(s) 122, 454
NlaIII CATG 3 cut(s) 20, 39, 257
NlaIV GGNNCC 2 cut(s) 22, 608
NmuCI GTSAC 2 cut(s) 233, 263
PfeI GAWTC 2 cut(s) 390, 621
PkrI GCNGC 5 cut(s) 9, 281, 335, 386, 588
PleI GAGTC 2 cut(s) 150, 230
PluTI GGCGCC 1 cut(s) 24
PpsI GAGTC 2 cut(s) 150, 230
PspN4I GGNNCC 2 cut(s) 22, 608
PspPI GGNCC 1 cut(s) 431
RseI CAYNNNNRTG 2 cut(s) 15, 296
SacII CCGCGG 1 cut(s) 402
SaqAI TTAA 4 cut(s) 486, 505, 511, 535
SatI GCNGC 5 cut(s) 8, 280, 334, 385, 587
Sau3AI GATC 2 cut(s) 122, 454
Sau96I GGNCC 1 cut(s) 431
SchI GAGTC 2 cut(s) 150, 230
SetI ASST 9 cut(s) 119, 164, 183, 208, 329, 429, 502, 599, 647
SfaNI GCATC 2 cut(s) 300, 345
SfoI GGCGCC 1 cut(s) 22
Sfr303I CCGCGG 1 cut(s) 402
SgrBI CCGCGG 1 cut(s) 402
SmiMI CAYNNNNRTG 2 cut(s) 15, 296
SmlI CTYRAG 1 cut(s) 462
SmoI CTYRAG 1 cut(s) 462
Sse9I AATT 4 cut(s) 151, 210, 574, 625
SsiI CCGC 4 cut(s) 279, 385, 399, 401
SspDI GGCGCC 1 cut(s) 20
SspMI CTAG 2 cut(s) 163, 439
TaaI ACNGT 1 cut(s) 634
TaiI ACGT 1 cut(s) 119
TaqI TCGA 1 cut(s) 619
TasI AATT 4 cut(s) 151, 210, 574, 625
TauI GCSGC 2 cut(s) 282, 387
TfiI GAWTC 2 cut(s) 390, 621
Tru1I TTAA 4 cut(s) 486, 505, 511, 535
Tru9I TTAA 4 cut(s) 486, 505, 511, 535
TscAI CASTG 2 cut(s) 268, 365
TseFI GTSAC 2 cut(s) 233, 263
TseI GCWGC 3 cut(s) 7, 333, 586
Tsp45I GTSAC 2 cut(s) 233, 263
TspDTI ATGAA 2 cut(s) 121, 270
TspGWI ACGGA 2 cut(s) 41, 45
TspRI CASTG 2 cut(s) 268, 365
XapI RAATTY 1 cut(s) 574
XspI CTAG 2 cut(s) 163, 439
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.