pycom09g19840

Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0013569
Physical Location & Seq
Forward (+)
20694469 .. 20695871
1403 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g19840.2

Sequence Viewer

Length: 696 bp
ATGAAAGATGTTTTTAGAGGCACCCACCCTTTCTTCCTTATTTCCGGTTTTGCTAAAACCTTAAGCAGCCTAGGCTGGTTGAGGTTTTTCGTCGAGCGGTCGGTGTGCGTAAACATGCCGCCCAGAAACAAAAACTCTCAAGGGCATTCCAAATCTGCCTTTCTCCCTCAAGGCCAAGACTTGTATGAAGGGGAACGTCTCGATCGTCTTCTCCAGCAAATTCAGAGAAGAATAGAGTCAGCAAGACTTGAGGATGGCAAGTCATTACCAGAAAAGATATGGTTCAAGAAACTATTCGCAATAGGGGTGAATGACGTGACTCGCGTGCTTGAACGTATGCTACCAACAGCAAGAGCAAGCAGCTTGGCAGGTAAAGCAGCATACATTGAGCTTCAGGCTGTTGTGGTCGCATCTGATTGCAATCCACGATGGCTGTCAAAGCACCTGCCAAGCTTGGCTCTTTCAAGGAAGGTCCCAGTCATCTTTCTCAAAGATAACAAGGGAGCTTCATTGAGATTGGGTCAACTTTTCAAACTTAAAACAGCCATTGCCATGGGAGTTAAGGCTAAAGGAAATGCCATCAATCTACTTTTTGAGGAGATCCTTAGTGGTAATACAATGCAACTCAGTGTCGGAAGTAAATGCCTCAACTCTTCTCAAATGCTTACCACAACACAAGGAAAAGTCCAGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_L7Ae

Protein Analysis

232

Amino Acids

25.75

Weight (kDa)

10.29

Isoelectric Point (pI)

40.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013569)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01790
fragaria_vesca FvH4_1g26230 FvH4_1g26230 FvH4_1g26230
malus_domestica MD09G1290400.v1.1 MD17G1285100.v1.1
prunus_persica Prupe.3G002600_v2.0.a1
pyrus_communis pycom09g19840
rosa_chinensis RchiOBHm_Chr3g0485771
rosa_laevigata RLG00000023126
rosa_multiflora Rmu_sc0012870.1_g000001
rosa_roxburghii Rroxscaffold_6G00396320
rosa_rugosa Rorug03G0221300
rosa_samantha Rh3AG270600 Rh3BG306100 Rh3CG304500 Rh3DG300600
rosa_wichuraiana Rw3G024100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 453
Acc36I ACCTGC 2 cut(s) 359, 453
AccB1I GGYRCC 1 cut(s) 20
AccBSI CCGCTC 1 cut(s) 97
AccII CGCG 1 cut(s) 324
AciI CCGC 2 cut(s) 97, 119
AclWI GGATC 1 cut(s) 595
AcsI RAATTY 1 cut(s) 219
AcuI CTGAAG 1 cut(s) 377
AflII CTTAAG 1 cut(s) 61
AgsI TTSAA 4 cut(s) 286, 332, 465, 532
AjiI CACGTC 1 cut(s) 316
AluBI AGCT 4 cut(s) 363, 391, 453, 506
AluI AGCT 4 cut(s) 363, 391, 453, 506
Alw26I GTCTC 1 cut(s) 203
AlwI GGATC 1 cut(s) 595
AoxI GGCC 1 cut(s) 172
ApeKI GCWGC 3 cut(s) 66, 360, 377
ApoI RAATTY 1 cut(s) 219
Asp700I GAANNNNTTC 1 cut(s) 293
AspA2I CCTAGG 1 cut(s) 70
AspS9I GGNCC 1 cut(s) 472
AsuHPI GGTGA 1 cut(s) 319
AvaII GGWCC 1 cut(s) 472
AvrII CCTAGG 1 cut(s) 70
BanI GGYRCC 1 cut(s) 20
BbsI GAAGAC 1 cut(s) 200
BbvI GCAGC 3 cut(s) 78, 372, 389
BccI CCATC 3 cut(s) 248, 423, 587
BcoDI GTCTC 1 cut(s) 203
BfaI CTAG 1 cut(s) 71
BfrI CTTAAG 1 cut(s) 61
BfuAI ACCTGC 2 cut(s) 359, 453
BisI GCNGC 4 cut(s) 67, 119, 361, 378
BlnI CCTAGG 1 cut(s) 70
BlsI GCNGC 4 cut(s) 68, 120, 362, 379
Bme18I GGWCC 1 cut(s) 472
BmgBI CACGTC 1 cut(s) 316
BmgT120I GGNCC 1 cut(s) 472
BmiI GGNNCC 2 cut(s) 22, 474
BmrI ACTGGG 1 cut(s) 470
BmsI GCATC 1 cut(s) 419
BmuI ACTGGG 1 cut(s) 470
BpiI GAAGAC 1 cut(s) 200
BpmI CTGGAG 1 cut(s) 197
BpuEI CTTGAG 3 cut(s) 123, 153, 269
BsaBI GATNNNNATC 1 cut(s) 420
BsaJI CCNNGG 2 cut(s) 70, 552
BsaWI WCCGGW 1 cut(s) 44
Bse1I ACTGG 1 cut(s) 476
Bse3DI GCAATG 1 cut(s) 546
Bse8I GATNNNNATC 1 cut(s) 420
BseDI CCNNGG 2 cut(s) 70, 552
BseGI GGATG 1 cut(s) 259
BseJI GATNNNNATC 1 cut(s) 420
BseMI GCAATG 1 cut(s) 546
BseMII CTCAG 1 cut(s) 640
BseNI ACTGG 1 cut(s) 476
BseRI GAGGAG 1 cut(s) 611
BseXI GCAGC 3 cut(s) 78, 372, 389
Bsh1236I CGCG 1 cut(s) 324
Bsh1285I CGRYCG 2 cut(s) 101, 205
BshFI GGCC 1 cut(s) 174
BshNI GGYRCC 1 cut(s) 20
BsiEI CGRYCG 2 cut(s) 101, 205
BsiSI CCGG 1 cut(s) 45
BslFI GGGAC 1 cut(s) 458
BsmAI GTCTC 1 cut(s) 203
BsmBI CGTCTC 1 cut(s) 203
BsmFI GGGAC 1 cut(s) 458
BsmI GAATGC 1 cut(s) 145
BsnI GGCC 1 cut(s) 174
Bsp143I GATC 2 cut(s) 202, 600
Bsp19I CCATGG 1 cut(s) 552
BspACI CCGC 2 cut(s) 97, 119
BspANI GGCC 1 cut(s) 174
BspCNI CTCAG 1 cut(s) 639
BspFNI CGCG 1 cut(s) 324
BspLI GGNNCC 2 cut(s) 22, 474
BspMI ACCTGC 2 cut(s) 359, 453
BspPI GGATC 1 cut(s) 595
BspT107I GGYRCC 1 cut(s) 20
BspTI CTTAAG 1 cut(s) 61
BsrBI CCGCTC 1 cut(s) 97
BsrDI GCAATG 1 cut(s) 546
BsrI ACTGG 1 cut(s) 476
BssECI CCNNGG 2 cut(s) 70, 552
BssMI GATC 2 cut(s) 202, 600
BssT1I CCWWGG 2 cut(s) 70, 552
Bst6I CTCTTC 1 cut(s) 658
BstAFI CTTAAG 1 cut(s) 61
BstC8I GCNNGC 2 cut(s) 326, 358
BstDEI CTNAG 2 cut(s) 605, 626
BstDSI CCRYGG 1 cut(s) 552
BstF5I GGATG 1 cut(s) 259
BstFNI CGCG 1 cut(s) 324
BstKTI GATC 2 cut(s) 205, 603
BstMAI GTCTC 1 cut(s) 203
BstMBI GATC 2 cut(s) 202, 600
BstMCI CGRYCG 2 cut(s) 101, 205
BstMWI GCNNNNNNNGC 3 cut(s) 72, 374, 439
BstNSI RCATGY 1 cut(s) 118
BstUI CGCG 1 cut(s) 324
BstV1I GCAGC 3 cut(s) 78, 372, 389
BstV2I GAAGAC 1 cut(s) 200
BstX2I RGATCY 1 cut(s) 600
BstXI CCANNNNNNTGG 1 cut(s) 553
BstYI RGATCY 1 cut(s) 600
BsuRI GGCC 1 cut(s) 174
BtgI CCRYGG 1 cut(s) 552
BtrI CACGTC 1 cut(s) 316
BtsCI GGATG 1 cut(s) 259
BtsIMutI CAGTG 1 cut(s) 634
BveI ACCTGC 2 cut(s) 359, 453
Cac8I GCNNGC 2 cut(s) 326, 358
Cfr13I GGNCC 1 cut(s) 472
CviAII CATG 2 cut(s) 115, 553
DdeI CTNAG 2 cut(s) 605, 626
DpnI GATC 2 cut(s) 204, 602
DpnII GATC 2 cut(s) 202, 600
Eam1104I CTCTTC 1 cut(s) 658
EarI CTCTTC 1 cut(s) 658
Eco130I CCWWGG 2 cut(s) 70, 552
Eco47I GGWCC 1 cut(s) 472
Eco57I CTGAAG 1 cut(s) 377
EcoO109I RGGNCCY 1 cut(s) 472
EcoT14I CCWWGG 2 cut(s) 70, 552
ErhI CCWWGG 2 cut(s) 70, 552
Esp3I CGTCTC 1 cut(s) 203
FaeI CATG 2 cut(s) 118, 556
FaiI YATR 6 cut(s) 116, 186, 280, 338, 382, 554
FaqI GGGAC 1 cut(s) 458
FatI CATG 2 cut(s) 114, 552
Fnu4HI GCNGC 4 cut(s) 67, 119, 361, 378
FokI GGATG 1 cut(s) 266
Fsp4HI GCNGC 4 cut(s) 67, 119, 361, 378
FspBI CTAG 1 cut(s) 71
GluI GCNGC 4 cut(s) 67, 119, 361, 378
GsuI CTGGAG 1 cut(s) 197
HaeIII GGCC 1 cut(s) 174
HapII CCGG 1 cut(s) 45
Hin1II CATG 2 cut(s) 118, 556
HincII GTYRAC 1 cut(s) 524
HindII GTYRAC 1 cut(s) 524
HindIII AAGCTT 1 cut(s) 451
HinfI GANTC 2 cut(s) 236, 319
HpaII CCGG 1 cut(s) 45
HphI GGTGA 1 cut(s) 319
Hpy166II GTNNAC 2 cut(s) 112, 524
Hpy188I TCNGA 3 cut(s) 225, 415, 635
Hpy188III TCNNGA 3 cut(s) 200, 286, 688
Hpy8I GTNNAC 2 cut(s) 112, 524
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 2 cut(s) 182, 463
HpyCH4IV ACGT 3 cut(s) 196, 315, 334
HpyCH4V TGCA 2 cut(s) 420, 622
HpyF10VI GCNNNNNNNGC 3 cut(s) 72, 374, 439
HpyF3I CTNAG 2 cut(s) 605, 626
HpySE526I ACGT 3 cut(s) 196, 315, 334
Hsp92II CATG 2 cut(s) 118, 556
Kzo9I GATC 2 cut(s) 202, 600
LmnI GCTCC 1 cut(s) 503
LpnPI CCDG 9 cut(s) 58, 61, 136, 227, 282, 354, 380, 458, 489
Lsp1109I GCAGC 3 cut(s) 78, 372, 389
LweI GCATC 1 cut(s) 419
MaeI CTAG 1 cut(s) 71
MaeII ACGT 3 cut(s) 196, 315, 334
MaeIII GTNAC 1 cut(s) 316
MalI GATC 2 cut(s) 204, 602
MbiI CCGCTC 1 cut(s) 97
MboI GATC 2 cut(s) 202, 600
MboII GAAGA 4 cut(s) 25, 200, 240, 645
MflI RGATCY 1 cut(s) 600
MluCI AATT 1 cut(s) 219
MlyI GAGTC 2 cut(s) 245, 313
MmeI TCCRAC 1 cut(s) 613
MnlI CCTC 6 cut(s) 11, 75, 177, 244, 589, 656
MroXI GAANNNNTTC 1 cut(s) 293
MseI TTAA 3 cut(s) 62, 537, 561
MslI CAYNNNNRTG 1 cut(s) 551
MspCI CTTAAG 1 cut(s) 61
MspI CCGG 1 cut(s) 45
Mva1269I GAATGC 1 cut(s) 145
MvnI CGCG 1 cut(s) 324
MwoI GCNNNNNNNGC 3 cut(s) 72, 374, 439
NcoI CCATGG 1 cut(s) 552
NdeII GATC 2 cut(s) 202, 600
NlaIII CATG 2 cut(s) 118, 556
NlaIV GGNNCC 2 cut(s) 22, 474
NmuCI GTSAC 1 cut(s) 316
NspI RCATGY 1 cut(s) 118
PaqCI CACCTGC 1 cut(s) 453
PcsI WCGNNNNNNNCGW 2 cut(s) 202, 321
PctI GAATGC 1 cut(s) 145
PdmI GAANNNNTTC 1 cut(s) 293
PkrI GCNGC 4 cut(s) 68, 120, 362, 379
Ple19I CGATCG 1 cut(s) 205
PleI GAGTC 2 cut(s) 244, 313
PpsI GAGTC 2 cut(s) 244, 313
PpuMI RGGWCCY 1 cut(s) 472
Psp5II RGGWCCY 1 cut(s) 472
PspN4I GGNNCC 2 cut(s) 22, 474
PspPI GGNCC 1 cut(s) 472
PspPPI RGGWCCY 1 cut(s) 472
PsrI GAACNNNNNNTAC 2 cut(s) 324, 356
PsuI RGATCY 1 cut(s) 600
PvuI CGATCG 1 cut(s) 205
RseI CAYNNNNRTG 1 cut(s) 551
SaqAI TTAA 3 cut(s) 62, 537, 561
SatI GCNGC 4 cut(s) 67, 119, 361, 378
Sau3AI GATC 2 cut(s) 202, 600
Sau96I GGNCC 1 cut(s) 472
SchI GAGTC 2 cut(s) 245, 313
SfaNI GCATC 1 cut(s) 419
SinI GGWCC 1 cut(s) 472
SmiMI CAYNNNNRTG 1 cut(s) 551
SmlI CTYRAG 4 cut(s) 61, 138, 168, 248
SmoI CTYRAG 4 cut(s) 61, 138, 168, 248
Sse9I AATT 1 cut(s) 219
SsiI CCGC 2 cut(s) 97, 119
SspMI CTAG 1 cut(s) 71
StyI CCWWGG 2 cut(s) 70, 552
TaiI ACGT 3 cut(s) 199, 318, 337
TaqI TCGA 2 cut(s) 93, 201
TasI AATT 1 cut(s) 219
TauI GCSGC 1 cut(s) 121
Tru1I TTAA 3 cut(s) 62, 537, 561
Tru9I TTAA 3 cut(s) 62, 537, 561
TscAI CASTG 1 cut(s) 634
TseFI GTSAC 1 cut(s) 316
TseI GCWGC 3 cut(s) 66, 360, 377
Tsp45I GTSAC 1 cut(s) 316
TspDTI ATGAA 3 cut(s) 17, 201, 498
TspRI CASTG 1 cut(s) 634
Vha464I CTTAAG 1 cut(s) 61
VpaK11BI GGWCC 1 cut(s) 472
XapI RAATTY 1 cut(s) 219
XceI RCATGY 1 cut(s) 118
XcmI CCANNNNNNNNNTGG 1 cut(s) 276
XmaJI CCTAGG 1 cut(s) 70
XmnI GAANNNNTTC 1 cut(s) 293
XspI CTAG 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.