Prupe.3G002600_v2.0.a1

Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0013569
Physical Location & Seq
Forward (+)
176105 .. 178417
2313 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G002600.1

Sequence Viewer

Length: 588 bp
ATGCCACCCAGAAACAAAGACTCTAAAGGGCGCATCATCAACGCTTCCAAGTCTCAAGACCAAGATTGCTATGAAGGGGAACGTCTCGATCGTCTGTTCCAATCAATTCAGAGAAAGATAGAGTCAGCAAGACTTGATAGCAATTGTTTACCCGAAAAGATGTGGTTCAAGCAACAATTTGCAATAGGGGTGAATGAAGTCACTCGTGTCCTTGAACGCATGCCACCAGTGACACCAATGGTGGCGCCAAGCTTAGCTTCTAATCGTACTAAAGCACCATACATCGGGCTTCAGGCTGTTCTGATAGCTTCTGATTGCAATCCACGATGGCTGTCAAAGCATCTGCCAAGCTTGGCCCTGTCAAGGAAGGTCCCCTTGATCTTTCTCAAAGATAACAAGGGAGCTTCTTTAAGATTGGGTCAACTTGTTCAACTTAAAACCGCCATTGCCATTGGAGTTAAGGCCAAAGGAAATGCCATCAATCAACTTATTGAGGAAATTCTCCGCGGCAATACAATTCAACTTGGAATTGAACGCCTCAACTCGACTCCAATGCTTACAACAGCACATGGACAAGTCCAGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_L7Ae

Protein Analysis

196

Amino Acids

21.75

Weight (kDa)

10.11

Isoelectric Point (pI)

47.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013569)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01790
fragaria_vesca FvH4_1g26230 FvH4_1g26230 FvH4_1g26230
malus_domestica MD09G1290400.v1.1 MD17G1285100.v1.1
prunus_persica Prupe.3G002600_v2.0.a1
pyrus_communis pycom09g19840
rosa_chinensis RchiOBHm_Chr3g0485771
rosa_laevigata RLG00000023126
rosa_multiflora Rmu_sc0012870.1_g000001
rosa_roxburghii Rroxscaffold_6G00396320
rosa_rugosa Rorug03G0221300
rosa_samantha Rh3AG270600 Rh3BG306100 Rh3CG304500 Rh3DG300600
rosa_wichuraiana Rw3G024100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 244
AccII CGCG 1 cut(s) 507
AciI CCGC 3 cut(s) 441, 505, 507
AcsI RAATTY 1 cut(s) 498
AcuI CTGAAG 1 cut(s) 275
AcyI GRCGYC 1 cut(s) 245
AfaI GTAC 1 cut(s) 268
AfiI CCNNNNNNNGG 2 cut(s) 284, 363
AgsI TTSAA 5 cut(s) 169, 215, 431, 521, 533
AjuI GAANNNNNNNTTGG 2 cut(s) 241, 273
AluBI AGCT 5 cut(s) 252, 257, 308, 351, 404
AluI AGCT 5 cut(s) 252, 257, 308, 351, 404
Alw26I GTCTC 2 cut(s) 57, 89
AoxI GGCC 2 cut(s) 354, 462
ApoI RAATTY 1 cut(s) 498
AspLEI GCGC 2 cut(s) 33, 247
AspS9I GGNCC 2 cut(s) 355, 370
AsuHPI GGTGA 1 cut(s) 202
AvaII GGWCC 1 cut(s) 370
BanI GGYRCC 1 cut(s) 244
BauI CACGAG 1 cut(s) 204
BccI CCATC 2 cut(s) 321, 485
BcgI CGANNNNNNTGC 2 cut(s) 535, 569
BcoDI GTCTC 2 cut(s) 57, 89
BfoI RGCGCY 1 cut(s) 248
BisI GCNGC 1 cut(s) 508
BlpI GCTNAGC 1 cut(s) 253
BlsI GCNGC 1 cut(s) 509
Bme18I GGWCC 1 cut(s) 370
BmgT120I GGNCC 2 cut(s) 355, 370
BmiI GGNNCC 2 cut(s) 246, 372
BmsI GCATC 2 cut(s) 42, 349
Bpu1102I GCTNAGC 1 cut(s) 253
BpuEI CTTGAG 1 cut(s) 39
BsaBI GATNNNNATC 1 cut(s) 318
BsaHI GRCGYC 1 cut(s) 245
BsaJI CCNNGG 1 cut(s) 505
Bsc4I CCNNNNNNNGG 2 cut(s) 284, 363
Bse1I ACTGG 1 cut(s) 227
Bse3DI GCAATG 1 cut(s) 444
Bse8I GATNNNNATC 1 cut(s) 318
BseDI CCNNGG 1 cut(s) 505
BseJI GATNNNNATC 1 cut(s) 318
BseLI CCNNNNNNNGG 2 cut(s) 284, 363
BseMI GCAATG 1 cut(s) 444
BseNI ACTGG 1 cut(s) 227
Bsh1236I CGCG 1 cut(s) 507
Bsh1285I CGRYCG 1 cut(s) 91
BshFI GGCC 2 cut(s) 356, 464
BshNI GGYRCC 1 cut(s) 244
BsiEI CGRYCG 1 cut(s) 91
BslFI GGGAC 1 cut(s) 356
BslI CCNNNNNNNGG 2 cut(s) 284, 363
BsmAI GTCTC 2 cut(s) 57, 89
BsmBI CGTCTC 1 cut(s) 89
BsmFI GGGAC 1 cut(s) 356
BsnI GGCC 2 cut(s) 356, 464
Bsp143I GATC 2 cut(s) 88, 378
Bsp1720I GCTNAGC 1 cut(s) 253
BspACI CCGC 3 cut(s) 441, 505, 507
BspANI GGCC 2 cut(s) 356, 464
BspFNI CGCG 1 cut(s) 507
BspLI GGNNCC 2 cut(s) 246, 372
BspT107I GGYRCC 1 cut(s) 244
BsrDI GCAATG 1 cut(s) 444
BsrI ACTGG 1 cut(s) 227
BssECI CCNNGG 1 cut(s) 505
BssMI GATC 2 cut(s) 88, 378
BssNI GRCGYC 1 cut(s) 245
BssSI CACGAG 1 cut(s) 204
Bst2BI CACGAG 1 cut(s) 204
BstACI GRCGYC 1 cut(s) 245
BstC8I GCNNGC 1 cut(s) 221
BstDEI CTNAG 1 cut(s) 253
BstDSI CCRYGG 1 cut(s) 505
BstFNI CGCG 1 cut(s) 507
BstH2I RGCGCY 1 cut(s) 248
BstHHI GCGC 2 cut(s) 33, 247
BstKTI GATC 2 cut(s) 91, 381
BstMAI GTCTC 2 cut(s) 57, 89
BstMBI GATC 2 cut(s) 88, 378
BstMCI CGRYCG 1 cut(s) 91
BstMWI GCNNNNNNNGC 1 cut(s) 337
BstNSI RCATGY 1 cut(s) 223
BstUI CGCG 1 cut(s) 507
BsuRI GGCC 2 cut(s) 356, 464
BtgI CCRYGG 1 cut(s) 505
BtsIMutI CAGTG 1 cut(s) 234
Cac8I GCNNGC 1 cut(s) 221
CfoI GCGC 2 cut(s) 33, 247
Cfr13I GGNCC 2 cut(s) 355, 370
Cfr42I CCGCGG 1 cut(s) 508
Csp6I GTAC 1 cut(s) 267
CviAII CATG 2 cut(s) 220, 569
CviQI GTAC 1 cut(s) 267
DdeI CTNAG 1 cut(s) 253
DinI GGCGCC 1 cut(s) 246
DpnI GATC 2 cut(s) 90, 380
DpnII GATC 2 cut(s) 88, 378
Eco47I GGWCC 1 cut(s) 370
Eco57I CTGAAG 1 cut(s) 275
EcoO109I RGGNCCY 1 cut(s) 370
EgeI GGCGCC 1 cut(s) 246
EheI GGCGCC 1 cut(s) 246
Esp3I CGTCTC 1 cut(s) 89
FaeI CATG 2 cut(s) 223, 572
FaiI YATR 4 cut(s) 72, 221, 280, 570
FalI AAGNNNNNCTT 4 cut(s) 241, 273, 359, 391
FaqI GGGAC 1 cut(s) 356
FatI CATG 2 cut(s) 219, 568
Fnu4HI GCNGC 1 cut(s) 508
Fsp4HI GCNGC 1 cut(s) 508
GlaI GCGC 2 cut(s) 32, 246
GluI GCNGC 1 cut(s) 508
HaeII RGCGCY 1 cut(s) 248
HaeIII GGCC 2 cut(s) 356, 464
HhaI GCGC 2 cut(s) 33, 247
Hin1I GRCGYC 1 cut(s) 245
Hin1II CATG 2 cut(s) 223, 572
Hin6I GCGC 2 cut(s) 31, 245
HinP1I GCGC 2 cut(s) 31, 245
HincII GTYRAC 1 cut(s) 422
HindII GTYRAC 1 cut(s) 422
HindIII AAGCTT 2 cut(s) 250, 349
HinfI GANTC 3 cut(s) 20, 122, 547
HphI GGTGA 1 cut(s) 202
Hpy166II GTNNAC 2 cut(s) 149, 422
Hpy188I TCNGA 3 cut(s) 111, 303, 313
Hpy188III TCNNGA 3 cut(s) 56, 86, 580
Hpy8I GTNNAC 2 cut(s) 149, 422
HpyAV CCTTC 2 cut(s) 68, 361
HpyCH4IV ACGT 1 cut(s) 82
HpyCH4V TGCA 2 cut(s) 182, 318
HpyF10VI GCNNNNNNNGC 1 cut(s) 337
HpyF3I CTNAG 1 cut(s) 253
HpySE526I ACGT 1 cut(s) 82
Hsp92I GRCGYC 1 cut(s) 245
Hsp92II CATG 2 cut(s) 223, 572
HspAI GCGC 2 cut(s) 31, 245
KasI GGCGCC 1 cut(s) 244
KspI CCGCGG 1 cut(s) 508
Kzo9I GATC 2 cut(s) 88, 378
LmnI GCTCC 1 cut(s) 401
LpnPI CCDG 4 cut(s) 22, 240, 278, 371
LweI GCATC 2 cut(s) 42, 349
MaeII ACGT 1 cut(s) 82
MaeIII GTNAC 2 cut(s) 199, 229
MalI GATC 2 cut(s) 90, 380
MboI GATC 2 cut(s) 88, 378
MfeI CAATTG 1 cut(s) 142
MluCI AATT 6 cut(s) 105, 142, 176, 498, 516, 528
Mly113I GGCGCC 1 cut(s) 245
MlyI GAGTC 3 cut(s) 14, 131, 541
MnlI CCTC 2 cut(s) 487, 548
MseI TTAA 3 cut(s) 410, 435, 459
MspA1I CMGCKG 1 cut(s) 507
MunI CAATTG 1 cut(s) 142
MvnI CGCG 1 cut(s) 507
MwoI GCNNNNNNNGC 1 cut(s) 337
NarI GGCGCC 1 cut(s) 245
NdeII GATC 2 cut(s) 88, 378
NlaIII CATG 2 cut(s) 223, 572
NlaIV GGNNCC 2 cut(s) 246, 372
NmuCI GTSAC 2 cut(s) 199, 229
NspI RCATGY 1 cut(s) 223
PaeI GCATGC 1 cut(s) 223
PcsI WCGNNNNNNNCGW 1 cut(s) 88
PkrI GCNGC 1 cut(s) 509
Ple19I CGATCG 1 cut(s) 91
PleI GAGTC 3 cut(s) 14, 130, 541
PluTI GGCGCC 1 cut(s) 248
PpsI GAGTC 3 cut(s) 14, 130, 541
PpuMI RGGWCCY 1 cut(s) 370
Psp5II RGGWCCY 1 cut(s) 370
PspN4I GGNNCC 2 cut(s) 246, 372
PspPI GGNCC 2 cut(s) 355, 370
PspPPI RGGWCCY 1 cut(s) 370
PvuI CGATCG 1 cut(s) 91
RsaI GTAC 1 cut(s) 268
RsaNI GTAC 1 cut(s) 267
SacII CCGCGG 1 cut(s) 508
SaqAI TTAA 3 cut(s) 410, 435, 459
SatI GCNGC 1 cut(s) 508
Sau3AI GATC 2 cut(s) 88, 378
Sau96I GGNCC 2 cut(s) 355, 370
SchI GAGTC 3 cut(s) 14, 131, 541
SetI ASST 7 cut(s) 85, 254, 259, 310, 353, 372, 406
SfaNI GCATC 2 cut(s) 42, 349
SfoI GGCGCC 1 cut(s) 246
Sfr303I CCGCGG 1 cut(s) 508
SgrBI CCGCGG 1 cut(s) 508
SinI GGWCC 1 cut(s) 370
SmlI CTYRAG 1 cut(s) 54
SmoI CTYRAG 1 cut(s) 54
SphI GCATGC 1 cut(s) 223
Sse9I AATT 6 cut(s) 105, 142, 176, 498, 516, 528
SsiI CCGC 3 cut(s) 441, 505, 507
SspDI GGCGCC 1 cut(s) 244
TaiI ACGT 1 cut(s) 85
TaqI TCGA 2 cut(s) 87, 545
TasI AATT 6 cut(s) 105, 142, 176, 498, 516, 528
TauI GCSGC 1 cut(s) 510
Tru1I TTAA 3 cut(s) 410, 435, 459
Tru9I TTAA 3 cut(s) 410, 435, 459
TscAI CASTG 1 cut(s) 234
TseFI GTSAC 2 cut(s) 199, 229
Tsp45I GTSAC 2 cut(s) 199, 229
TspDTI ATGAA 2 cut(s) 87, 210
TspRI CASTG 1 cut(s) 234
VpaK11BI GGWCC 1 cut(s) 370
XapI RAATTY 1 cut(s) 498
XceI RCATGY 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.