Rh3AG270600

Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0013569
Physical Location & Seq
Forward (+)
30842088 .. 30843022
935 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG270600.1

Sequence Viewer

Length: 672 bp
ATGGCGCCCAGAAAGAAACATGGGAACAACAACTCCGTCCGTCCTTCCAAGTCGGGCCTTCACCCTCAACACCAACCCCAAGATTGCTATGAAGGGGAACGTCTGGATCATCTTCTCCAATCTATTCAGAGGTCAGTAGGTTACCTTATGTTCGAGTATATAGTTTTAAGTATCATTGGTGAATTAACTTGCTATACATTTATGTTGTACAGAAAAATAGAGTCAGCTAGACTAATGGATAATTGCTTGCCCGAAAAGATATGGTTCAAGCTACAATTTGCAGTTGGGGTGAATGATGTGACTCGTGTTCTTGAACGCATGAAACCAGTGACATCACCAATGGCGGCAGGCTTAGCAACCGAGTGTAATCCCCCTGCTCCTCCTCCTAAAGCTAAAGCAGCATCTAATGAGCTTCAGGCTGTGCTGATAGCCGCTGATTCCAATCCGCGGTGGCTCACGAAACATCTGCCAAGCTTGGCCCTTTCTAGGAATGTCCCGTTGATCTTTCTCAAGGATAACAAGGGGGCTTCTTTAAGATTGGGTCAGCTTGTTAAACTTAAAACTGCCATTGCTATTGGAGTTAAGGCCAAAGGAAATGCCATCAACCAACTTGTTGACGAAATTCTTAGTGGCACCGGTCAAGGTCATCTTGGAACCAAATGTCTCGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_L7Ae

Protein Analysis

223

Amino Acids

24.55

Weight (kDa)

9.49

Isoelectric Point (pI)

39.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013569)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01790
fragaria_vesca FvH4_1g26230 FvH4_1g26230 FvH4_1g26230
malus_domestica MD09G1290400.v1.1 MD17G1285100.v1.1
prunus_persica Prupe.3G002600_v2.0.a1
pyrus_communis pycom09g19840
rosa_chinensis RchiOBHm_Chr3g0485771
rosa_laevigata RLG00000023126
rosa_multiflora Rmu_sc0012870.1_g000001
rosa_roxburghii Rroxscaffold_6G00396320
rosa_rugosa Rorug03G0221300
rosa_samantha Rh3AG270600 Rh3BG306100 Rh3CG304500 Rh3DG300600
rosa_wichuraiana Rw3G024100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 4, 632
AccII CGCG 1 cut(s) 448
AciI CCGC 4 cut(s) 344, 432, 446, 448
AclWI GGATC 1 cut(s) 114
AcsI RAATTY 1 cut(s) 621
AcuI CTGAAG 1 cut(s) 398
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 209
AfiI CCNNNNNNNGG 2 cut(s) 447, 486
AgeI ACCGGT 1 cut(s) 635
AgsI TTSAA 2 cut(s) 268, 314
AloI GAACNNNNNNTCC 2 cut(s) 17, 49
AluBI AGCT 6 cut(s) 227, 271, 392, 412, 474, 547
AluI AGCT 6 cut(s) 227, 271, 392, 412, 474, 547
Alw26I GTCTC 1 cut(s) 668
AlwI GGATC 1 cut(s) 114
AoxI GGCC 3 cut(s) 55, 477, 585
ApeKI GCWGC 1 cut(s) 398
ApoI RAATTY 1 cut(s) 621
AsiGI ACCGGT 1 cut(s) 635
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 2 cut(s) 55, 478
AsuHPI GGTGA 4 cut(s) 53, 191, 301, 327
BanI GGYRCC 2 cut(s) 4, 632
BauI CACGAG 1 cut(s) 303
BbvI GCAGC 1 cut(s) 410
BccI CCATC 1 cut(s) 608
BcgI CGANNNNNNTGC 2 cut(s) 448, 482
BcoDI GTCTC 1 cut(s) 668
BfaI CTAG 2 cut(s) 228, 486
BfoI RGCGCY 1 cut(s) 8
BisI GCNGC 3 cut(s) 345, 399, 432
BlpI GCTNAGC 1 cut(s) 352
BlsI GCNGC 3 cut(s) 346, 400, 433
BmgT120I GGNCC 2 cut(s) 55, 478
BmiI GGNNCC 3 cut(s) 6, 634, 655
BmsI GCATC 1 cut(s) 410
Bpu1102I GCTNAGC 1 cut(s) 352
BpuEI CTTGAG 1 cut(s) 494
BsaBI GATNNNNATC 1 cut(s) 441
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 446
BsaWI WCCGGW 1 cut(s) 635
BsaXI ACNNNNNCTCC 2 cut(s) 17, 47
Bsc4I CCNNNNNNNGG 2 cut(s) 447, 486
Bse118I RCCGGY 1 cut(s) 635
Bse1I ACTGG 1 cut(s) 326
Bse3DI GCAATG 1 cut(s) 567
Bse8I GATNNNNATC 1 cut(s) 441
BseDI CCNNGG 1 cut(s) 446
BseJI GATNNNNATC 1 cut(s) 441
BseLI CCNNNNNNNGG 2 cut(s) 447, 486
BseMI GCAATG 1 cut(s) 567
BseNI ACTGG 1 cut(s) 326
BseRI GAGGAG 2 cut(s) 369, 372
BseXI GCAGC 1 cut(s) 410
Bsh1236I CGCG 1 cut(s) 448
BshFI GGCC 3 cut(s) 57, 479, 587
BshNI GGYRCC 2 cut(s) 4, 632
BshTI ACCGGT 1 cut(s) 635
BsiSI CCGG 1 cut(s) 636
BslFI GGGAC 1 cut(s) 479
BslI CCNNNNNNNGG 2 cut(s) 447, 486
BsmAI GTCTC 1 cut(s) 668
BsmFI GGGAC 1 cut(s) 479
BsnI GGCC 3 cut(s) 57, 479, 587
Bsp1407I TGTACA 1 cut(s) 207
Bsp143I GATC 2 cut(s) 106, 501
Bsp1720I GCTNAGC 1 cut(s) 352
BspACI CCGC 4 cut(s) 344, 432, 446, 448
BspANI GGCC 3 cut(s) 57, 479, 587
BspFNI CGCG 1 cut(s) 448
BspLI GGNNCC 3 cut(s) 6, 634, 655
BspPI GGATC 1 cut(s) 114
BspT107I GGYRCC 2 cut(s) 4, 632
BsrDI GCAATG 1 cut(s) 567
BsrFI RCCGGY 1 cut(s) 635
BsrGI TGTACA 1 cut(s) 207
BsrI ACTGG 1 cut(s) 326
BssAI RCCGGY 1 cut(s) 635
BssECI CCNNGG 1 cut(s) 446
BssMI GATC 2 cut(s) 106, 501
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 303
Bst2BI CACGAG 1 cut(s) 303
BstACI GRCGYC 1 cut(s) 5
BstAUI TGTACA 1 cut(s) 207
BstC8I GCNNGC 2 cut(s) 248, 349
BstDEI CTNAG 2 cut(s) 352, 626
BstDSI CCRYGG 1 cut(s) 446
BstEII GGTNACC 1 cut(s) 140
BstFNI CGCG 1 cut(s) 448
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 2 cut(s) 109, 504
BstMAI GTCTC 1 cut(s) 668
BstMBI GATC 2 cut(s) 106, 501
BstMWI GCNNNNNNNGC 2 cut(s) 353, 398
BstPI GGTNACC 1 cut(s) 140
BstUI CGCG 1 cut(s) 448
BstV1I GCAGC 1 cut(s) 410
BsuRI GGCC 3 cut(s) 57, 479, 587
BtgI CCRYGG 1 cut(s) 446
BtsIMutI CAGTG 1 cut(s) 333
Cac8I GCNNGC 2 cut(s) 248, 349
CfoI GCGC 1 cut(s) 7
Cfr10I RCCGGY 1 cut(s) 635
Cfr13I GGNCC 2 cut(s) 55, 478
Cfr42I CCGCGG 1 cut(s) 449
Csp6I GTAC 1 cut(s) 208
CspAI ACCGGT 1 cut(s) 635
CviAII CATG 2 cut(s) 20, 319
CviQI GTAC 1 cut(s) 208
DdeI CTNAG 2 cut(s) 352, 626
DinI GGCGCC 1 cut(s) 6
DpnI GATC 2 cut(s) 108, 503
DpnII GATC 2 cut(s) 106, 501
Eco57I CTGAAG 1 cut(s) 398
Eco91I GGTNACC 1 cut(s) 140
EcoO65I GGTNACC 1 cut(s) 140
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
FaeI CATG 2 cut(s) 23, 322
FaiI YATR 9 cut(s) 21, 90, 149, 159, 161, 195, 203, 262, 320
FalI AAGNNNNNCTT 2 cut(s) 633, 665
FaqI GGGAC 1 cut(s) 479
FatI CATG 2 cut(s) 19, 318
Fnu4HI GCNGC 3 cut(s) 345, 399, 432
Fsp4HI GCNGC 3 cut(s) 345, 399, 432
FspBI CTAG 2 cut(s) 228, 486
GlaI GCGC 1 cut(s) 6
GluI GCNGC 3 cut(s) 345, 399, 432
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 3 cut(s) 57, 479, 587
HapII CCGG 1 cut(s) 636
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 2 cut(s) 23, 322
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HincII GTYRAC 1 cut(s) 616
HindII GTYRAC 1 cut(s) 616
HindIII AAGCTT 1 cut(s) 472
HinfI GANTC 3 cut(s) 221, 301, 437
HpaII CCGG 1 cut(s) 636
HphI GGTGA 4 cut(s) 53, 191, 301, 327
Hpy166II GTNNAC 1 cut(s) 616
Hpy188I TCNGA 1 cut(s) 129
Hpy188III TCNNGA 4 cut(s) 104, 311, 457, 665
Hpy8I GTNNAC 1 cut(s) 616
HpyAV CCTTC 3 cut(s) 54, 68, 86
HpyCH4IV ACGT 1 cut(s) 100
HpyCH4V TGCA 1 cut(s) 281
HpyF10VI GCNNNNNNNGC 2 cut(s) 353, 398
HpyF3I CTNAG 2 cut(s) 352, 626
HpySE526I ACGT 1 cut(s) 100
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 2 cut(s) 23, 322
HspAI GCGC 1 cut(s) 5
KasI GGCGCC 1 cut(s) 4
KspI CCGCGG 1 cut(s) 449
Kzo9I GATC 2 cut(s) 106, 501
LmnI GCTCC 1 cut(s) 382
LpnPI CCDG 7 cut(s) 22, 89, 333, 339, 387, 401, 649
Lsp1109I GCAGC 1 cut(s) 410
LweI GCATC 1 cut(s) 410
MaeI CTAG 2 cut(s) 228, 486
MaeII ACGT 1 cut(s) 100
MaeIII GTNAC 3 cut(s) 140, 298, 328
MalI GATC 2 cut(s) 108, 503
MboI GATC 2 cut(s) 106, 501
MboII GAAGA 1 cut(s) 104
MluCI AATT 4 cut(s) 182, 241, 275, 621
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 2 cut(s) 230, 295
MnlI CCTC 4 cut(s) 75, 123, 390, 393
MseI TTAA 6 cut(s) 167, 185, 533, 552, 558, 582
MspA1I CMGCKG 2 cut(s) 434, 448
MspI CCGG 1 cut(s) 636
MvnI CGCG 1 cut(s) 448
MwoI GCNNNNNNNGC 2 cut(s) 353, 398
NarI GGCGCC 1 cut(s) 5
NdeII GATC 2 cut(s) 106, 501
NlaIII CATG 2 cut(s) 23, 322
NlaIV GGNNCC 3 cut(s) 6, 634, 655
NmuCI GTSAC 2 cut(s) 298, 328
PfeI GAWTC 1 cut(s) 437
PinAI ACCGGT 1 cut(s) 635
PkrI GCNGC 3 cut(s) 346, 400, 433
PleI GAGTC 2 cut(s) 229, 295
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 2 cut(s) 229, 295
PspEI GGTNACC 1 cut(s) 140
PspN4I GGNNCC 3 cut(s) 6, 634, 655
PspPI GGNCC 2 cut(s) 55, 478
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
SacII CCGCGG 1 cut(s) 449
SaqAI TTAA 6 cut(s) 167, 185, 533, 552, 558, 582
SatI GCNGC 3 cut(s) 345, 399, 432
Sau3AI GATC 2 cut(s) 106, 501
Sau96I GGNCC 2 cut(s) 55, 478
SchI GAGTC 2 cut(s) 230, 295
SfaNI GCATC 1 cut(s) 410
SfoI GGCGCC 1 cut(s) 6
Sfr303I CCGCGG 1 cut(s) 449
SgrBI CCGCGG 1 cut(s) 449
SmlI CTYRAG 1 cut(s) 509
SmoI CTYRAG 1 cut(s) 509
Sse9I AATT 4 cut(s) 182, 241, 275, 621
SsiI CCGC 4 cut(s) 344, 432, 446, 448
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 2 cut(s) 228, 486
TaiI ACGT 1 cut(s) 103
TaqI TCGA 2 cut(s) 153, 666
TasI AATT 4 cut(s) 182, 241, 275, 621
TatI WGTACW 1 cut(s) 207
TauI GCSGC 2 cut(s) 347, 434
TfiI GAWTC 1 cut(s) 437
Tru1I TTAA 6 cut(s) 167, 185, 533, 552, 558, 582
Tru9I TTAA 6 cut(s) 167, 185, 533, 552, 558, 582
TscAI CASTG 1 cut(s) 333
TseFI GTSAC 2 cut(s) 298, 328
TseI GCWGC 1 cut(s) 398
Tsp45I GTSAC 2 cut(s) 298, 328
TspDTI ATGAA 2 cut(s) 105, 335
TspGWI ACGGA 2 cut(s) 25, 29
TspRI CASTG 1 cut(s) 333
XapI RAATTY 1 cut(s) 621
XspI CTAG 2 cut(s) 228, 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.