Rh3CG304500

Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0013569
Physical Location & Seq
Forward (+)
31740648 .. 31741641
994 bp
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UTR
Exon/CDS
Intron
Rh3CG304500.1

Sequence Viewer

Length: 732 bp
ATGGCGCCCAGAAAGAAACATGGGAACAACAACTCCGTCCGTCCTTCCAAGTCTGGCCTTCACCCTCAACACCAACCCCAAGATTGCTATGAAGGGGAACGTCTGGATCATCTTCTCCAATCTATTCAGAGGTTAGTAGGTTACTTCATGTTTGAGTATATAGATTTAAGTTTCATTGGTGAATTAACTTGCTATACATTTATGTTGTACAGAAAAATTGAGTCAGCTAGACTAATGGATAATACCTTGCCTGAAAAGATATGGTTCAAGCTACAATTTGCAGTTGGGGTGAATGATGTGACTCGTGTTCTTGAACGCATGAAACCAGTGACATCACCAATGGCGGCAGGCTTAGCATCCGAGTGTAATCCCCCTGCTCCTCCTCCTAAAGCTAAAGCAGCATCTAATGCCAATGCCAATGCCACTGCGCTTCAGGCTGTGCTGATAGCCGCTGATTCCAACCCGCGGTGGCTCACGAAACATCTGCCAAGCTTGGCCCTTTCTAGGAATGTCCCGTTGATCTTTCTCAAGGATAACAAGGGGGCTTCTTTAAGATTGGGTCAGCTTGTTAAACTTAAAACTGCCATTGCTATTGGAGTTAAGGCCAAAGGAAATGCCATCAATCAACTTGTTGACGAAATTCTTAGTGGCAGCAGTCAAGGTCATCTTGGAACCGAATGTCTCGATTCAACTCAACTGCTTCCTACACCTAAAGGGCAAGTGCAGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_L7Ae

Protein Analysis

243

Amino Acids

26.68

Weight (kDa)

9.56

Isoelectric Point (pI)

39.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013569)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01790
fragaria_vesca FvH4_1g26230 FvH4_1g26230 FvH4_1g26230
malus_domestica MD09G1290400.v1.1 MD17G1285100.v1.1
prunus_persica Prupe.3G002600_v2.0.a1
pyrus_communis pycom09g19840
rosa_chinensis RchiOBHm_Chr3g0485771
rosa_laevigata RLG00000023126
rosa_multiflora Rmu_sc0012870.1_g000001
rosa_roxburghii Rroxscaffold_6G00396320
rosa_rugosa Rorug03G0221300
rosa_samantha Rh3AG270600 Rh3BG306100 Rh3CG304500 Rh3DG300600
rosa_wichuraiana Rw3G024100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AccII CGCG 1 cut(s) 466
AciI CCGC 4 cut(s) 344, 450, 464, 466
AclWI GGATC 1 cut(s) 114
AcsI RAATTY 1 cut(s) 639
AcuI CTGAAG 1 cut(s) 416
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 209
AfiI CCNNNNNNNGG 2 cut(s) 465, 504
AgsI TTSAA 3 cut(s) 268, 314, 690
AloI GAACNNNNNNTCC 2 cut(s) 17, 49
AluBI AGCT 5 cut(s) 227, 271, 392, 492, 565
AluI AGCT 5 cut(s) 227, 271, 392, 492, 565
Alw26I GTCTC 1 cut(s) 686
AlwI GGATC 1 cut(s) 114
AoxI GGCC 3 cut(s) 55, 495, 603
ApeKI GCWGC 2 cut(s) 398, 651
ApoI RAATTY 1 cut(s) 639
AspLEI GCGC 2 cut(s) 7, 430
AspS9I GGNCC 1 cut(s) 496
AsuHPI GGTGA 4 cut(s) 53, 191, 301, 327
BanI GGYRCC 1 cut(s) 4
BauI CACGAG 1 cut(s) 303
BbvI GCAGC 2 cut(s) 410, 663
BccI CCATC 1 cut(s) 626
BcgI CGANNNNNNTGC 2 cut(s) 466, 500
BcoDI GTCTC 1 cut(s) 686
BfaI CTAG 2 cut(s) 228, 504
BfoI RGCGCY 1 cut(s) 8
BisI GCNGC 4 cut(s) 345, 399, 450, 652
BlpI GCTNAGC 1 cut(s) 352
BlsI GCNGC 4 cut(s) 346, 400, 451, 653
BmgT120I GGNCC 1 cut(s) 496
BmiI GGNNCC 2 cut(s) 6, 673
BmsI GCATC 2 cut(s) 365, 410
Bpu1102I GCTNAGC 1 cut(s) 352
BpuEI CTTGAG 1 cut(s) 512
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 464
BsaXI ACNNNNNCTCC 2 cut(s) 17, 47
Bsc4I CCNNNNNNNGG 2 cut(s) 465, 504
Bse1I ACTGG 1 cut(s) 326
Bse3DI GCAATG 1 cut(s) 585
BseDI CCNNGG 1 cut(s) 464
BseGI GGATG 1 cut(s) 356
BseLI CCNNNNNNNGG 2 cut(s) 465, 504
BseMI GCAATG 1 cut(s) 585
BseNI ACTGG 1 cut(s) 326
BseRI GAGGAG 2 cut(s) 369, 372
BseXI GCAGC 2 cut(s) 410, 663
Bsh1236I CGCG 1 cut(s) 466
BshFI GGCC 3 cut(s) 57, 497, 605
BshNI GGYRCC 1 cut(s) 4
BslFI GGGAC 1 cut(s) 497
BslI CCNNNNNNNGG 2 cut(s) 465, 504
BsmAI GTCTC 1 cut(s) 686
BsmFI GGGAC 1 cut(s) 497
BsnI GGCC 3 cut(s) 57, 497, 605
Bsp1407I TGTACA 1 cut(s) 207
Bsp143I GATC 2 cut(s) 106, 519
Bsp1720I GCTNAGC 1 cut(s) 352
BspACI CCGC 4 cut(s) 344, 450, 464, 466
BspANI GGCC 3 cut(s) 57, 497, 605
BspFNI CGCG 1 cut(s) 466
BspLI GGNNCC 2 cut(s) 6, 673
BspPI GGATC 1 cut(s) 114
BspT107I GGYRCC 1 cut(s) 4
BsrDI GCAATG 1 cut(s) 585
BsrGI TGTACA 1 cut(s) 207
BsrI ACTGG 1 cut(s) 326
BssECI CCNNGG 1 cut(s) 464
BssMI GATC 2 cut(s) 106, 519
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 303
Bst2BI CACGAG 1 cut(s) 303
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 407
BstAUI TGTACA 1 cut(s) 207
BstC8I GCNNGC 1 cut(s) 349
BstDEI CTNAG 2 cut(s) 352, 644
BstDSI CCRYGG 1 cut(s) 464
BstF5I GGATG 1 cut(s) 356
BstFNI CGCG 1 cut(s) 466
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 430
BstKTI GATC 2 cut(s) 109, 522
BstMAI GTCTC 1 cut(s) 686
BstMBI GATC 2 cut(s) 106, 519
BstMWI GCNNNNNNNGC 4 cut(s) 353, 398, 407, 434
BstUI CGCG 1 cut(s) 466
BstV1I GCAGC 2 cut(s) 410, 663
BsuRI GGCC 3 cut(s) 57, 497, 605
BtgI CCRYGG 1 cut(s) 464
BtsCI GGATG 1 cut(s) 356
BtsI GCAGTG 1 cut(s) 423
BtsIMutI CAGTG 2 cut(s) 333, 423
Cac8I GCNNGC 1 cut(s) 349
CfoI GCGC 2 cut(s) 7, 430
Cfr13I GGNCC 1 cut(s) 496
Cfr42I CCGCGG 1 cut(s) 467
Csp6I GTAC 1 cut(s) 208
CviAII CATG 3 cut(s) 20, 148, 319
CviQI GTAC 1 cut(s) 208
DdeI CTNAG 2 cut(s) 352, 644
DinI GGCGCC 1 cut(s) 6
DpnI GATC 2 cut(s) 108, 521
DpnII GATC 2 cut(s) 106, 519
Eco57I CTGAAG 1 cut(s) 416
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
FaeI CATG 3 cut(s) 23, 151, 322
FaiI YATR 9 cut(s) 21, 90, 149, 159, 161, 195, 203, 262, 320
FalI AAGNNNNNCTT 2 cut(s) 651, 683
FaqI GGGAC 1 cut(s) 497
FatI CATG 3 cut(s) 19, 147, 318
FauI CCCGC 1 cut(s) 471
Fnu4HI GCNGC 4 cut(s) 345, 399, 450, 652
FokI GGATG 1 cut(s) 343
Fsp4HI GCNGC 4 cut(s) 345, 399, 450, 652
FspBI CTAG 2 cut(s) 228, 504
GlaI GCGC 2 cut(s) 6, 429
GluI GCNGC 4 cut(s) 345, 399, 450, 652
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 3 cut(s) 57, 497, 605
HhaI GCGC 2 cut(s) 7, 430
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 3 cut(s) 23, 151, 322
Hin6I GCGC 2 cut(s) 5, 428
HinP1I GCGC 2 cut(s) 5, 428
HincII GTYRAC 1 cut(s) 634
HindII GTYRAC 1 cut(s) 634
HindIII AAGCTT 1 cut(s) 490
HinfI GANTC 4 cut(s) 221, 301, 455, 686
HphI GGTGA 4 cut(s) 53, 191, 301, 327
Hpy166II GTNNAC 1 cut(s) 634
Hpy188I TCNGA 2 cut(s) 129, 361
Hpy188III TCNNGA 4 cut(s) 104, 311, 475, 683
Hpy8I GTNNAC 1 cut(s) 634
HpyAV CCTTC 3 cut(s) 54, 68, 86
HpyCH4IV ACGT 1 cut(s) 100
HpyCH4V TGCA 2 cut(s) 281, 724
HpyF10VI GCNNNNNNNGC 4 cut(s) 353, 398, 407, 434
HpyF3I CTNAG 2 cut(s) 352, 644
HpySE526I ACGT 1 cut(s) 100
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 3 cut(s) 23, 151, 322
HspAI GCGC 2 cut(s) 5, 428
KasI GGCGCC 1 cut(s) 4
KspI CCGCGG 1 cut(s) 467
Kzo9I GATC 2 cut(s) 106, 519
LmnI GCTCC 1 cut(s) 382
LpnPI CCDG 8 cut(s) 22, 39, 89, 264, 333, 339, 387, 419
Lsp1109I GCAGC 2 cut(s) 410, 663
LweI GCATC 2 cut(s) 365, 410
MaeI CTAG 2 cut(s) 228, 504
MaeII ACGT 1 cut(s) 100
MaeIII GTNAC 3 cut(s) 140, 298, 328
MalI GATC 2 cut(s) 108, 521
MboI GATC 2 cut(s) 106, 519
MboII GAAGA 1 cut(s) 104
MluCI AATT 4 cut(s) 182, 216, 275, 639
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 2 cut(s) 230, 295
MmeI TCCRAC 1 cut(s) 483
MnlI CCTC 4 cut(s) 75, 123, 390, 393
MseI TTAA 6 cut(s) 167, 185, 551, 570, 576, 600
MslI CAYNNNNRTG 1 cut(s) 361
MspA1I CMGCKG 2 cut(s) 452, 466
MvnI CGCG 1 cut(s) 466
MwoI GCNNNNNNNGC 4 cut(s) 353, 398, 407, 434
NarI GGCGCC 1 cut(s) 5
NdeII GATC 2 cut(s) 106, 519
NlaIII CATG 3 cut(s) 23, 151, 322
NlaIV GGNNCC 2 cut(s) 6, 673
NmuCI GTSAC 2 cut(s) 298, 328
PfeI GAWTC 2 cut(s) 455, 686
PkrI GCNGC 4 cut(s) 346, 400, 451, 653
PleI GAGTC 2 cut(s) 229, 295
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 2 cut(s) 229, 295
PspN4I GGNNCC 2 cut(s) 6, 673
PspPI GGNCC 1 cut(s) 496
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
RseI CAYNNNNRTG 1 cut(s) 361
SacII CCGCGG 1 cut(s) 467
SaqAI TTAA 6 cut(s) 167, 185, 551, 570, 576, 600
SatI GCNGC 4 cut(s) 345, 399, 450, 652
Sau3AI GATC 2 cut(s) 106, 519
Sau96I GGNCC 1 cut(s) 496
SchI GAGTC 2 cut(s) 230, 295
SfaNI GCATC 2 cut(s) 365, 410
SfoI GGCGCC 1 cut(s) 6
Sfr303I CCGCGG 1 cut(s) 467
SgrBI CCGCGG 1 cut(s) 467
SmiMI CAYNNNNRTG 1 cut(s) 361
SmlI CTYRAG 1 cut(s) 527
SmoI CTYRAG 1 cut(s) 527
Sse9I AATT 4 cut(s) 182, 216, 275, 639
SsiI CCGC 4 cut(s) 344, 450, 464, 466
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 2 cut(s) 228, 504
TaiI ACGT 1 cut(s) 103
TaqI TCGA 1 cut(s) 684
TasI AATT 4 cut(s) 182, 216, 275, 639
TatI WGTACW 1 cut(s) 207
TauI GCSGC 2 cut(s) 347, 452
TfiI GAWTC 2 cut(s) 455, 686
Tru1I TTAA 6 cut(s) 167, 185, 551, 570, 576, 600
Tru9I TTAA 6 cut(s) 167, 185, 551, 570, 576, 600
TscAI CASTG 2 cut(s) 333, 430
TseFI GTSAC 2 cut(s) 298, 328
TseI GCWGC 2 cut(s) 398, 651
Tsp45I GTSAC 2 cut(s) 298, 328
TspDTI ATGAA 4 cut(s) 105, 136, 163, 335
TspGWI ACGGA 2 cut(s) 25, 29
TspRI CASTG 2 cut(s) 333, 430
XapI RAATTY 1 cut(s) 639
XspI CTAG 2 cut(s) 228, 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.