RLG00000023126

Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0013569
Physical Location & Seq
Reverse (-)
18532923 .. 18533879
957 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023126

Sequence Viewer

Length: 621 bp
ATGGCGCCCAGAAAGAAACATGGGAACAACAACTCCATCCGTCCTTCCAAGTCTGGCCTTCACCCTCAACACCAACCCCAAGATTGCTATGAAGGGGAACGTCTGGATCATCTTCTCCAATCTATTCAGAGAAAAATTGAGTCAGCTAGACTACTGGATAATTCCTTGCCTGAAAAGATATGGTTCAAGCTACAATTTGCAGTTGGGGTGAATGATGTGACTCGTGTTCTTGAACGCATGAAACCAGTGACATCACCGATGGCGGCAGGCTTAGCATCCGAGTGTAATCCCCCTGCTCCTCCTCCTAAAGCTAAAGCAGCATCTAATGCCAATGCCACTGCGCTTCAGGCTGTGCTGATAGCCGCTGATTCCAACCCGCGGTGGCTCACGAAGCATCTGCCAAGCTTGGCCCTTTCTAGGAATGTCCCGTTGATATTTCTCAAGGATAACAAGGGGGCTTCTTTAAGATTGGGTCAGCTTGTTAAACTTAAAACTGCCATTGCTATTGGAGTTAAGGCCAAGGGAAATGCCATCAATCAACTTGTTGACGAAATTCTTAGTGGCAGCAGTCAAGGTCATCTTGAGAAGTCTCGATTGAACTCAACTGCTTCCTACACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_L7Ae

Protein Analysis

207

Amino Acids

22.34

Weight (kDa)

10.05

Isoelectric Point (pI)

43.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013569)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01790
fragaria_vesca FvH4_1g26230 FvH4_1g26230 FvH4_1g26230
malus_domestica MD09G1290400.v1.1 MD17G1285100.v1.1
prunus_persica Prupe.3G002600_v2.0.a1
pyrus_communis pycom09g19840
rosa_chinensis RchiOBHm_Chr3g0485771
rosa_laevigata RLG00000023126
rosa_multiflora Rmu_sc0012870.1_g000001
rosa_roxburghii Rroxscaffold_6G00396320
rosa_rugosa Rorug03G0221300
rosa_samantha Rh3AG270600 Rh3BG306100 Rh3CG304500 Rh3DG300600
rosa_wichuraiana Rw3G024100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AccII CGCG 1 cut(s) 379
AciI CCGC 4 cut(s) 263, 363, 377, 379
AclWI GGATC 1 cut(s) 114
AcsI RAATTY 1 cut(s) 552
AcuI CTGAAG 1 cut(s) 329
AcyI GRCGYC 1 cut(s) 5
AfiI CCNNNNNNNGG 2 cut(s) 378, 417
AgsI TTSAA 3 cut(s) 187, 233, 598
AloI GAACNNNNNNTCC 2 cut(s) 17, 49
AluBI AGCT 5 cut(s) 146, 190, 311, 405, 478
AluI AGCT 5 cut(s) 146, 190, 311, 405, 478
Alw26I GTCTC 1 cut(s) 594
AlwI GGATC 1 cut(s) 114
AoxI GGCC 3 cut(s) 55, 408, 516
ApeKI GCWGC 2 cut(s) 317, 564
ApoI RAATTY 1 cut(s) 552
AspLEI GCGC 2 cut(s) 7, 343
AspS9I GGNCC 1 cut(s) 409
AsuHPI GGTGA 3 cut(s) 53, 220, 246
BanI GGYRCC 1 cut(s) 4
BauI CACGAG 1 cut(s) 222
BbvI GCAGC 2 cut(s) 329, 576
BccI CCATC 3 cut(s) 44, 253, 539
BcgI CGANNNNNNTGC 2 cut(s) 379, 413
BcoDI GTCTC 1 cut(s) 594
BfaI CTAG 2 cut(s) 147, 417
BfoI RGCGCY 1 cut(s) 8
BisI GCNGC 4 cut(s) 264, 318, 363, 565
BlpI GCTNAGC 1 cut(s) 271
BlsI GCNGC 4 cut(s) 265, 319, 364, 566
BmgT120I GGNCC 1 cut(s) 409
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 3 cut(s) 284, 329, 403
Bpu1102I GCTNAGC 1 cut(s) 271
BpuEI CTTGAG 2 cut(s) 425, 602
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 2 cut(s) 377, 519
BsaXI ACNNNNNCTCC 2 cut(s) 17, 47
Bsc4I CCNNNNNNNGG 2 cut(s) 378, 417
Bse1I ACTGG 2 cut(s) 159, 245
Bse3DI GCAATG 1 cut(s) 498
BseDI CCNNGG 2 cut(s) 377, 519
BseGI GGATG 2 cut(s) 36, 275
BseLI CCNNNNNNNGG 2 cut(s) 378, 417
BseMI GCAATG 1 cut(s) 498
BseNI ACTGG 2 cut(s) 159, 245
BseRI GAGGAG 2 cut(s) 288, 291
BseXI GCAGC 2 cut(s) 329, 576
Bsh1236I CGCG 1 cut(s) 379
BshFI GGCC 3 cut(s) 57, 410, 518
BshNI GGYRCC 1 cut(s) 4
BslFI GGGAC 1 cut(s) 410
BslI CCNNNNNNNGG 2 cut(s) 378, 417
BsmAI GTCTC 1 cut(s) 594
BsmFI GGGAC 1 cut(s) 410
BsnI GGCC 3 cut(s) 57, 410, 518
Bsp143I GATC 1 cut(s) 106
Bsp1720I GCTNAGC 1 cut(s) 271
BspACI CCGC 4 cut(s) 263, 363, 377, 379
BspANI GGCC 3 cut(s) 57, 410, 518
BspFNI CGCG 1 cut(s) 379
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 114
BspT107I GGYRCC 1 cut(s) 4
BsrDI GCAATG 1 cut(s) 498
BsrI ACTGG 2 cut(s) 159, 245
BssECI CCNNGG 2 cut(s) 377, 519
BssMI GATC 1 cut(s) 106
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 222
BssT1I CCWWGG 1 cut(s) 519
Bst2BI CACGAG 1 cut(s) 222
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 326
BstC8I GCNNGC 1 cut(s) 268
BstDEI CTNAG 2 cut(s) 271, 557
BstDSI CCRYGG 1 cut(s) 377
BstF5I GGATG 2 cut(s) 36, 275
BstFNI CGCG 1 cut(s) 379
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 343
BstKTI GATC 1 cut(s) 109
BstMAI GTCTC 1 cut(s) 594
BstMBI GATC 1 cut(s) 106
BstMWI GCNNNNNNNGC 5 cut(s) 272, 317, 326, 347, 391
BstUI CGCG 1 cut(s) 379
BstV1I GCAGC 2 cut(s) 329, 576
BsuRI GGCC 3 cut(s) 57, 410, 518
BtgI CCRYGG 1 cut(s) 377
BtsCI GGATG 2 cut(s) 36, 275
BtsI GCAGTG 1 cut(s) 336
BtsIMutI CAGTG 2 cut(s) 252, 336
Cac8I GCNNGC 1 cut(s) 268
CfoI GCGC 2 cut(s) 7, 343
Cfr13I GGNCC 1 cut(s) 409
Cfr42I CCGCGG 1 cut(s) 380
CviAII CATG 2 cut(s) 20, 238
DdeI CTNAG 2 cut(s) 271, 557
DinI GGCGCC 1 cut(s) 6
DpnI GATC 1 cut(s) 108
DpnII GATC 1 cut(s) 106
Eco130I CCWWGG 1 cut(s) 519
Eco57I CTGAAG 1 cut(s) 329
EcoT14I CCWWGG 1 cut(s) 519
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 519
FaeI CATG 2 cut(s) 23, 241
FaiI YATR 4 cut(s) 21, 90, 181, 239
FalI AAGNNNNNCTT 2 cut(s) 564, 596
FaqI GGGAC 1 cut(s) 410
FatI CATG 2 cut(s) 19, 237
FauI CCCGC 1 cut(s) 384
Fnu4HI GCNGC 4 cut(s) 264, 318, 363, 565
FokI GGATG 2 cut(s) 23, 262
Fsp4HI GCNGC 4 cut(s) 264, 318, 363, 565
FspBI CTAG 2 cut(s) 147, 417
GlaI GCGC 2 cut(s) 6, 342
GluI GCNGC 4 cut(s) 264, 318, 363, 565
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 3 cut(s) 57, 410, 518
HhaI GCGC 2 cut(s) 7, 343
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 2 cut(s) 23, 241
Hin6I GCGC 2 cut(s) 5, 341
HinP1I GCGC 2 cut(s) 5, 341
HincII GTYRAC 1 cut(s) 547
HindII GTYRAC 1 cut(s) 547
HindIII AAGCTT 1 cut(s) 403
HinfI GANTC 3 cut(s) 140, 220, 368
HphI GGTGA 3 cut(s) 53, 220, 246
Hpy166II GTNNAC 1 cut(s) 547
Hpy188I TCNGA 2 cut(s) 129, 280
Hpy188III TCNNGA 5 cut(s) 104, 230, 388, 581, 591
Hpy8I GTNNAC 1 cut(s) 547
HpyAV CCTTC 3 cut(s) 54, 68, 86
HpyCH4IV ACGT 1 cut(s) 100
HpyCH4V TGCA 1 cut(s) 200
HpyF10VI GCNNNNNNNGC 5 cut(s) 272, 317, 326, 347, 391
HpyF3I CTNAG 2 cut(s) 271, 557
HpySE526I ACGT 1 cut(s) 100
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 2 cut(s) 23, 241
HspAI GCGC 2 cut(s) 5, 341
KasI GGCGCC 1 cut(s) 4
KspI CCGCGG 1 cut(s) 380
Kzo9I GATC 1 cut(s) 106
LmnI GCTCC 1 cut(s) 301
LpnPI CCDG 9 cut(s) 22, 39, 89, 140, 183, 252, 258, 306, 332
Lsp1109I GCAGC 2 cut(s) 329, 576
LweI GCATC 3 cut(s) 284, 329, 403
MaeI CTAG 2 cut(s) 147, 417
MaeII ACGT 1 cut(s) 100
MaeIII GTNAC 2 cut(s) 217, 247
MalI GATC 1 cut(s) 108
MboI GATC 1 cut(s) 106
MboII GAAGA 1 cut(s) 104
MluCI AATT 4 cut(s) 135, 160, 194, 552
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 2 cut(s) 149, 214
MmeI TCCRAC 1 cut(s) 396
MnlI CCTC 3 cut(s) 75, 309, 312
MseI TTAA 4 cut(s) 464, 483, 489, 513
MslI CAYNNNNRTG 1 cut(s) 280
MspA1I CMGCKG 2 cut(s) 365, 379
MvnI CGCG 1 cut(s) 379
MwoI GCNNNNNNNGC 5 cut(s) 272, 317, 326, 347, 391
NarI GGCGCC 1 cut(s) 5
NdeII GATC 1 cut(s) 106
NlaIII CATG 2 cut(s) 23, 241
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 2 cut(s) 217, 247
PfeI GAWTC 1 cut(s) 368
PkrI GCNGC 4 cut(s) 265, 319, 364, 566
PleI GAGTC 2 cut(s) 148, 214
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 2 cut(s) 148, 214
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 409
RseI CAYNNNNRTG 1 cut(s) 280
SacII CCGCGG 1 cut(s) 380
SaqAI TTAA 4 cut(s) 464, 483, 489, 513
SatI GCNGC 4 cut(s) 264, 318, 363, 565
Sau3AI GATC 1 cut(s) 106
Sau96I GGNCC 1 cut(s) 409
SchI GAGTC 2 cut(s) 149, 214
SetI ASST 8 cut(s) 103, 148, 192, 313, 407, 480, 577, 620
SfaNI GCATC 3 cut(s) 284, 329, 403
SfoI GGCGCC 1 cut(s) 6
Sfr303I CCGCGG 1 cut(s) 380
SgrBI CCGCGG 1 cut(s) 380
SmiMI CAYNNNNRTG 1 cut(s) 280
SmlI CTYRAG 2 cut(s) 440, 581
SmoI CTYRAG 2 cut(s) 440, 581
Sse9I AATT 4 cut(s) 135, 160, 194, 552
SsiI CCGC 4 cut(s) 263, 363, 377, 379
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 2 cut(s) 147, 417
StyI CCWWGG 1 cut(s) 519
TaiI ACGT 1 cut(s) 103
TaqI TCGA 1 cut(s) 592
TasI AATT 4 cut(s) 135, 160, 194, 552
TauI GCSGC 2 cut(s) 266, 365
TfiI GAWTC 1 cut(s) 368
Tru1I TTAA 4 cut(s) 464, 483, 489, 513
Tru9I TTAA 4 cut(s) 464, 483, 489, 513
TscAI CASTG 2 cut(s) 252, 343
TseFI GTSAC 2 cut(s) 217, 247
TseI GCWGC 2 cut(s) 317, 564
Tsp45I GTSAC 2 cut(s) 217, 247
TspDTI ATGAA 2 cut(s) 105, 254
TspGWI ACGGA 1 cut(s) 29
TspRI CASTG 2 cut(s) 252, 343
XapI RAATTY 1 cut(s) 552
XspI CTAG 2 cut(s) 147, 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.