Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008226

Physical Location & Seq

Genomic Coordinates Reverse (-)

1557120 .. 1559437

Gene Structure 2318 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G03510.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGCCTTAGATCAATCTTTTGAAGATGCTGCTTTACTTGGAGAACTCTATGGAGAAGGTGCATTTTGTTTCAAGAGCAAGAAACCTGAACCCATTACAGTCTCGGTTCCTTCTGATGATACTGATGATTCGAATTTTGACTGCAATATTTGCTTAGACTCGGTGCAAGAACCTGTTGTGACTCTCTGTGGTCACCTCTTTTGCTGGCCTTGTATTCACAAATGGCTTGATGTACAGAGCTTCTCAACAAGTGATGAATACCAAAGACATAGACAGTGTCCTGTTTGTAAATCTAAAGTTTCTCATTCTACTTTGGTTCCTTTGTATGGTAGAGGCCGTTGTACTACTCAGGAGGAAGGTAAAAACAGTGTGCCTAAAAGACCCGTAGGACCGGTTTATCGGCTTGAAATGCCGAATTCACCTTATGCAAGTACTGATCTGCGGTTATCACAACGGGTTCATTTCAATAGCCCACAGGAAGGTTACTACCCTGTCTCAGGGGTGATGAGCTCGAACAGTTTATCATACTCTGCTGTTTTGGATCCGGTGATGGTGATGGTTGGAGAAATGGTAGCTACGAGGTTGTTTGGAACACGAGTGATGGATAGATTTGCGTATCCGGACACTTACAATCTCGCAGGGACTAGCGGGCCGAGGATGAGAAGGCGGATAATGCAGGCAGATAAATCGCTGGGAAGAATCTTCTTCTTCTTTATGTGTTGTGTTGTTCTGTGTCTTCTCTTGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009611 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010243 GO:0010498 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031984 GO:0032446 GO:0032527 GO:0032991 GO:0033036 GO:0033554 GO:0034613 GO:0034976 GO:0035966 GO:0035967 GO:0036211 GO:0036503 GO:0036513 GO:0042175 GO:0042221 GO:0042886 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050896 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0051788 GO:0070647 GO:0070727 GO:0070887 GO:0071218 GO:0071310 GO:0071702 GO:0071704 GO:0071705 GO:0071712 GO:0098796 GO:0098827 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

zf-C3HC4 zf-C3HC4_2

Protein Analysis

249

Amino Acids

28.01

Weight (kDa)

6.51

Isoelectric Point (pI)

47.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_5	PF14634	47 - 97	6.8e-08	zinc-RING finger domain
zf-RING_2	PF13639	47 - 97	8.1e-07	Ring finger domain
zf-C3HC4_3	PF13920	47 - 102	3.6e-06	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	48 - 96	2.1e-10	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	48 - 78	2.9e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	48 - 94	4.5e-09	RING-type zinc-finger
RING_XB3-XBAT31	PF24921	48 - 101	3.3e-08	E3 ubiquitin-protein ligase XB3/XBAT31 RING finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0008226)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03510 AT4G03510 AT4G03510 AT4G03510
fragaria_vesca	FvH4_6g26170
malus_domestica	MD09G1248700.v1.1 MD17G1241200.v1.1
prunus_persica	Prupe.3G137000_v2.0.a1
pyrus_communis	pycom09g16560 pycom17g24430 pycom17g24440 pycom17g24450
rosa_chinensis	RchiOBHm_Chr2g0126321
rosa_laevigata	RLG00000018901
rosa_multiflora	Rmu_ssc0000264.1_g000040
rosa_roxburghii	Rroxscaffold_2G00117240
rosa_rugosa	Rorug02G0262600 Rorug02G0262700
rosa_samantha	Rh2AG319500 Rh2BG327900 Rh2CG307800 Rh2DG347600
rosa_wichuraiana	Rw2G025890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	619
AciI	CCGC	3 cut(s)	442, 648, 667
AclWI	GGATC	2 cut(s)	536, 549
AcsI	RAATTY	2 cut(s)	133, 415
AfaI	GTAC	3 cut(s)	234, 343, 433
AfiI	CCNNNNNNNGG	3 cut(s)	326, 479, 497
AgeI	ACCGGT	1 cut(s)	391
AgsI	TTSAA	4 cut(s)	23, 73, 407, 466
AluBI	AGCT	3 cut(s)	240, 510, 575
AluI	AGCT	3 cut(s)	240, 510, 575
Alw21I	GWGCWC	1 cut(s)	512
Alw26I	GTCTC	2 cut(s)	106, 499
AlwI	GGATC	2 cut(s)	536, 549
Aor13HI	TCCGGA	1 cut(s)	619
AoxI	GGCC	4 cut(s)	3, 206, 334, 650
ApeKI	GCWGC	1 cut(s)	29
ApoI	RAATTY	2 cut(s)	133, 415
AsiGI	ACCGGT	1 cut(s)	391
AspS9I	GGNCC	2 cut(s)	389, 650
AsuHPI	GGTGA	5 cut(s)	185, 411, 514, 559, 565
AsuII	TTCGAA	1 cut(s)	131
AvaII	GGWCC	1 cut(s)	389
BamHI	GGATCC	1 cut(s)	541
BanII	GRGCYC	1 cut(s)	512
BauI	CACGAG	1 cut(s)	594
BbsI	GAAGAC	1 cut(s)	728
Bbv12I	GWGCWC	1 cut(s)	512
BbvI	GCAGC	1 cut(s)	16
BccI	CCATC	3 cut(s)	544, 550, 595
BceAI	ACGGC	1 cut(s)	321
BcgI	CGANNNNNNTGC	2 cut(s)	669, 703
BciVI	GTATCC	1 cut(s)	627
BcoDI	GTCTC	2 cut(s)	106, 499
BfaI	CTAG	1 cut(s)	645
BfuI	GTATCC	1 cut(s)	627
BisI	GCNGC	1 cut(s)	30
BlsI	GCNGC	1 cut(s)	31
BmcAI	AGTACT	1 cut(s)	433
Bme18I	GGWCC	1 cut(s)	389
BmgT120I	GGNCC	2 cut(s)	389, 650
BmiI	GGNNCC	3 cut(s)	108, 318, 543
BmsI	GCATC	1 cut(s)	16
BpiI	GAAGAC	1 cut(s)	728
Bpu14I	TTCGAA	1 cut(s)	131
BsaJI	CCNNGG	1 cut(s)	653
BsaWI	WCCGGW	3 cut(s)	391, 544, 619
BsaXI	ACNNNNNCTCC	2 cut(s)	555, 585
Bsc4I	CCNNNNNNNGG	3 cut(s)	326, 479, 497
Bse118I	RCCGGY	1 cut(s)	391
BseAI	TCCGGA	1 cut(s)	619
BseDI	CCNNGG	1 cut(s)	653
BseGI	GGATG	1 cut(s)	663
BseLI	CCNNNNNNNGG	3 cut(s)	326, 479, 497
BseMII	CTCAG	2 cut(s)	362, 510
BseXI	GCAGC	1 cut(s)	16
BseYI	CCCAGC	1 cut(s)	691
BshFI	GGCC	4 cut(s)	5, 208, 336, 652
BshTI	ACCGGT	1 cut(s)	391
BsiHKAI	GWGCWC	1 cut(s)	512
BsiSI	CCGG	3 cut(s)	392, 545, 620
BslFI	GGGAC	1 cut(s)	655
BslI	CCNNNNNNNGG	3 cut(s)	326, 479, 497
BsmAI	GTCTC	2 cut(s)	106, 499
BsmFI	GGGAC	1 cut(s)	655
BsnI	GGCC	4 cut(s)	5, 208, 336, 652
Bsp119I	TTCGAA	1 cut(s)	131
Bsp1286I	GDGCHC	1 cut(s)	512
Bsp13I	TCCGGA	1 cut(s)	619
Bsp1407I	TGTACA	1 cut(s)	232
Bsp143I	GATC	3 cut(s)	10, 436, 541
BspACI	CCGC	3 cut(s)	442, 648, 667
BspANI	GGCC	4 cut(s)	5, 208, 336, 652
BspCNI	CTCAG	2 cut(s)	361, 509
BspEI	TCCGGA	1 cut(s)	619
BspLI	GGNNCC	3 cut(s)	108, 318, 543
BspPI	GGATC	2 cut(s)	536, 549
BspT104I	TTCGAA	1 cut(s)	131
BsrFI	RCCGGY	1 cut(s)	391
BsrGI	TGTACA	1 cut(s)	232
BssAI	RCCGGY	1 cut(s)	391
BssECI	CCNNGG	1 cut(s)	653
BssMI	GATC	3 cut(s)	10, 436, 541
BssSI	CACGAG	1 cut(s)	594
Bst2BI	CACGAG	1 cut(s)	594
Bst4CI	ACNGT	4 cut(s)	100, 276, 368, 518
BstAPI	GCANNNNNTGC	1 cut(s)	150
BstAUI	TGTACA	1 cut(s)	232
BstBI	TTCGAA	1 cut(s)	131
BstC8I	GCNNGC	3 cut(s)	206, 650, 678
BstDEI	CTNAG	4 cut(s)	7, 154, 348, 496
BstEII	GGTNACC	1 cut(s)	191
BstENI	CCTNNNNNAGG	1 cut(s)	495
BstF5I	GGATG	1 cut(s)	663
BstKTI	GATC	3 cut(s)	13, 439, 544
BstMAI	GTCTC	2 cut(s)	106, 499
BstMBI	GATC	3 cut(s)	10, 436, 541
BstMWI	GCNNNNNNNGC	3 cut(s)	150, 409, 673
BstPI	GGTNACC	1 cut(s)	191
BstV1I	GCAGC	1 cut(s)	16
BstV2I	GAAGAC	1 cut(s)	728
BstX2I	RGATCY	1 cut(s)	541
BstYI	RGATCY	1 cut(s)	541
BsuI	GTATCC	1 cut(s)	627
BsuRI	GGCC	4 cut(s)	5, 208, 336, 652
BtsCI	GGATG	1 cut(s)	663
BtsIMutI	CAGTG	2 cut(s)	281, 373
Cac8I	GCNNGC	3 cut(s)	206, 650, 678
Cfr10I	RCCGGY	1 cut(s)	391
Cfr13I	GGNCC	2 cut(s)	389, 650
Csp6I	GTAC	3 cut(s)	233, 342, 432
CspAI	ACCGGT	1 cut(s)	391
CviQI	GTAC	3 cut(s)	233, 342, 432
DdeI	CTNAG	4 cut(s)	7, 154, 348, 496
DpnI	GATC	3 cut(s)	12, 438, 543
DpnII	GATC	3 cut(s)	10, 436, 541
EciI	GGCGGA	1 cut(s)	682
Ecl136II	GAGCTC	1 cut(s)	510
Eco24I	GRGCYC	1 cut(s)	512
Eco47I	GGWCC	1 cut(s)	389
Eco53kI	GAGCTC	1 cut(s)	510
Eco91I	GGTNACC	1 cut(s)	191
EcoICRI	GAGCTC	1 cut(s)	510
EcoNI	CCTNNNNNAGG	1 cut(s)	495
EcoO65I	GGTNACC	1 cut(s)	191
EcoRI	GAATTC	1 cut(s)	415
EcoT38I	GRGCYC	1 cut(s)	512
FaiI	YATR	6 cut(s)	51, 270, 327, 426, 526, 716
FaqI	GGGAC	1 cut(s)	655
FauI	CCCGC	1 cut(s)	641
Fnu4HI	GCNGC	1 cut(s)	30
FokI	GGATG	1 cut(s)	670
FriOI	GRGCYC	1 cut(s)	512
Fsp4HI	GCNGC	1 cut(s)	30
FspBI	CTAG	1 cut(s)	645
GluI	GCNGC	1 cut(s)	30
GsaI	CCCAGC	1 cut(s)	695
HaeIII	GGCC	4 cut(s)	5, 208, 336, 652
HapII	CCGG	3 cut(s)	392, 545, 620
HinfI	GANTC	4 cut(s)	128, 158, 181, 699
HpaII	CCGG	3 cut(s)	392, 545, 620
HphI	GGTGA	5 cut(s)	185, 411, 514, 559, 565
Hpy188I	TCNGA	1 cut(s)	115
Hpy188III	TCNNGA	3 cut(s)	73, 350, 620
HpyAV	CCTTC	5 cut(s)	50, 120, 350, 473, 657
HpyCH4III	ACNGT	4 cut(s)	100, 276, 368, 518
HpyCH4V	TGCA	5 cut(s)	62, 144, 166, 428, 676
HpyF10VI	GCNNNNNNNGC	3 cut(s)	150, 409, 673
HpyF3I	CTNAG	4 cut(s)	7, 154, 348, 496
Kpn2I	TCCGGA	1 cut(s)	619
Kzo9I	GATC	3 cut(s)	10, 436, 541
Lsp1109I	GCAGC	1 cut(s)	16
LweI	GCATC	1 cut(s)	16
MaeI	CTAG	1 cut(s)	645
MaeIII	GTNAC	3 cut(s)	178, 191, 482
MalI	GATC	3 cut(s)	12, 438, 543
MboI	GATC	3 cut(s)	10, 436, 541
MboII	GAAGA	6 cut(s)	35, 694, 697, 700, 708, 728
MflI	RGATCY	1 cut(s)	541
MhlI	GDGCHC	1 cut(s)	512
MluCI	AATT	2 cut(s)	133, 415
MlyI	GAGTC	2 cut(s)	152, 175
MmeI	TCCRAC	1 cut(s)	541
MnlI	CCTC	5 cut(s)	206, 326, 346, 573, 648
MroI	TCCGGA	1 cut(s)	619
MspI	CCGG	3 cut(s)	392, 545, 620
MwoI	GCNNNNNNNGC	3 cut(s)	150, 409, 673
NdeII	GATC	3 cut(s)	10, 436, 541
NlaIV	GGNNCC	3 cut(s)	108, 318, 543
NmeAIII	GCCGAG	1 cut(s)	678
NmuCI	GTSAC	2 cut(s)	178, 191
NspV	TTCGAA	1 cut(s)	131
PfeI	GAWTC	2 cut(s)	128, 699
PflFI	GACNNNGTC	1 cut(s)	276
PinAI	ACCGGT	1 cut(s)	391
PkrI	GCNGC	1 cut(s)	31
PleI	GAGTC	2 cut(s)	152, 175
PpsI	GAGTC	2 cut(s)	152, 175
Psp124BI	GAGCTC	1 cut(s)	512
PspEI	GGTNACC	1 cut(s)	191
PspFI	CCCAGC	1 cut(s)	691
PspN4I	GGNNCC	3 cut(s)	108, 318, 543
PspPI	GGNCC	2 cut(s)	389, 650
PsuI	RGATCY	1 cut(s)	541
PsyI	GACNNNGTC	1 cut(s)	276
RsaI	GTAC	3 cut(s)	234, 343, 433
RsaNI	GTAC	3 cut(s)	233, 342, 432
SacI	GAGCTC	1 cut(s)	512
SatI	GCNGC	1 cut(s)	30
Sau3AI	GATC	3 cut(s)	10, 436, 541
Sau96I	GGNCC	2 cut(s)	389, 650
ScaI	AGTACT	1 cut(s)	433
SchI	GAGTC	2 cut(s)	152, 175
SduI	GDGCHC	1 cut(s)	512
SfaNI	GCATC	1 cut(s)	16
SfuI	TTCGAA	1 cut(s)	131
SinI	GGWCC	1 cut(s)	389
Sse9I	AATT	2 cut(s)	133, 415
SsiI	CCGC	3 cut(s)	442, 648, 667
SspI	AATATT	1 cut(s)	148
SspMI	CTAG	1 cut(s)	645
SstI	GAGCTC	1 cut(s)	512
TaaI	ACNGT	4 cut(s)	100, 276, 368, 518
TaqI	TCGA	2 cut(s)	131, 512
TasI	AATT	2 cut(s)	133, 415
TatI	WGTACW	3 cut(s)	232, 341, 431
TfiI	GAWTC	2 cut(s)	128, 699
TscAI	CASTG	2 cut(s)	281, 373
TseFI	GTSAC	2 cut(s)	178, 191
TseI	GCWGC	1 cut(s)	29
Tsp45I	GTSAC	2 cut(s)	178, 191
TspDTI	ATGAA	2 cut(s)	270, 449
TspRI	CASTG	2 cut(s)	281, 373
Tth111I	GACNNNGTC	1 cut(s)	276
VpaK11BI	GGWCC	1 cut(s)	389
XagI	CCTNNNNNAGG	1 cut(s)	495
XapI	RAATTY	2 cut(s)	133, 415
XspI	CTAG	1 cut(s)	645
ZrmI	AGTACT	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.