Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0008226

Physical Location & Seq

Genomic Coordinates Reverse (-)

14458296 .. 14460748

Gene Structure 2453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G137000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGCCCTAGAGCAGCACTTTCCAGAGGCTATGGTTCAAAATGACTCCATTGGACAAGATAAATGTTCCTTTGAAAAGTGGAACTCTGTTTCTGATGAAGTCACAGACTCTGAAAACAAATCCTGTGGTAATTTCGACTGCAGCATATGCTTGGACTCTGTGCACGAACCAGTAGTCACCCTCTGCGGTCACCTCTTCTGCTGGCCTTGCATATACAAGTGGCTTCAGTTCCAGAGCCCGCCCTCTGAATACCAGGATGAGCAAAAACAGCCGCAGTGCCCTGTATGCAAAGCTGAAGTCAATGAATCTTCTCTAGTCCCACTCTACGGTCGGGGCCAAACGACAAAGCCTACAAAGCCCTCCAAAGGCAAGGCTTCCCATCTTGGTATAGTCATTCCGCGAAGACCTTTTCGTCCTTGCGGGGTTGACACACCACGAACAGCCGGTACCCCCACCAGTCCATACGTTACTCAGCAACTCCATCATCGGAGTTCTCCTTACAGTTCACAACTAAACACTCCACAACAAGGCAGTAACACTGCTTTACCGATGCAAAGCCCTGGAAGCACCACCACAATCAATCCAGTAATTGGAATGTTCGGCGAAATGGTATACGCAAGGGTCTTTGGTAACTCAATGACAAACTTGTACACTTATTCGAATTCGTACAATCTTGCCGGGAGCGGTAGTCCAAGGGTTAGAAGGCATGTAATGCAGGCTGATAAGTCGCTCAGCAGAATATGTTTTTTCCTCTTCTGTTGCTTTATGTTGTGCCTTCTTTTGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009611 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010243 GO:0010498 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031984 GO:0032446 GO:0032527 GO:0032991 GO:0033036 GO:0033554 GO:0034613 GO:0034976 GO:0035966 GO:0035967 GO:0036211 GO:0036503 GO:0036513 GO:0042175 GO:0042221 GO:0042886 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050896 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0051788 GO:0070647 GO:0070727 GO:0070887 GO:0071218 GO:0071310 GO:0071702 GO:0071704 GO:0071705 GO:0071712 GO:0098796 GO:0098827 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

zf-C3HC4 zf-C3HC4_2 zf-RING_UBOX

Protein Analysis

263

Amino Acids

29.22

Weight (kDa)

7.9

Isoelectric Point (pI)

50.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008226)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03510 AT4G03510 AT4G03510 AT4G03510
fragaria_vesca	FvH4_6g26170
malus_domestica	MD09G1248700.v1.1 MD17G1241200.v1.1
prunus_persica	Prupe.3G137000_v2.0.a1
pyrus_communis	pycom09g16560 pycom17g24430 pycom17g24440 pycom17g24450
rosa_chinensis	RchiOBHm_Chr2g0126321
rosa_laevigata	RLG00000018901
rosa_multiflora	Rmu_ssc0000264.1_g000040
rosa_roxburghii	Rroxscaffold_2G00117240
rosa_rugosa	Rorug02G0262600 Rorug02G0262700
rosa_samantha	Rh2AG319500 Rh2BG327900 Rh2CG307800 Rh2DG347600
rosa_wichuraiana	Rw2G025890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	411
Acc65I	GGTACC	1 cut(s)	446
AccB1I	GGYRCC	1 cut(s)	446
AccB7I	CCANNNNNTGG	1 cut(s)	590
AccBSI	CCGCTC	1 cut(s)	684
AccI	GTMKAC	1 cut(s)	612
AccII	CGCG	1 cut(s)	400
AciI	CCGC	6 cut(s)	186, 239, 272, 398, 420, 684
AcsI	RAATTY	1 cut(s)	661
AcuI	CTGAAG	2 cut(s)	209, 315
AfaI	GTAC	3 cut(s)	448, 650, 668
AfiI	CCNNNNNNNGG	4 cut(s)	326, 365, 527, 590
AgsI	TTSAA	2 cut(s)	38, 74
AjnI	CCWGG	2 cut(s)	252, 559
AluBI	AGCT	1 cut(s)	293
AluI	AGCT	1 cut(s)	293
Alw21I	GWGCWC	1 cut(s)	165
Alw44I	GTGCAC	1 cut(s)	161
AlwNI	CAGNNNCTG	1 cut(s)	110
AoxI	GGCC	3 cut(s)	3, 203, 334
ApaLI	GTGCAC	1 cut(s)	161
ApeKI	GCWGC	2 cut(s)	13, 141
ApoI	RAATTY	1 cut(s)	661
ArsI	GACNNNNNNTTYG	4 cut(s)	159, 191, 282, 314
Asp718I	GGTACC	1 cut(s)	446
AspS9I	GGNCC	2 cut(s)	4, 334
AsuC2I	CCSGG	1 cut(s)	679
AsuHPI	GGTGA	2 cut(s)	169, 182
AsuII	TTCGAA	1 cut(s)	659
BaeGI	GKGCMC	2 cut(s)	165, 281
BanI	GGYRCC	1 cut(s)	446
BanII	GRGCYC	1 cut(s)	239
BbsI	GAAGAC	1 cut(s)	409
Bbv12I	GWGCWC	1 cut(s)	165
BbvI	GCAGC	2 cut(s)	25, 153
BccI	CCATC	2 cut(s)	387, 489
BciT130I	CCWGG	2 cut(s)	254, 561
BcnI	CCSGG	1 cut(s)	679
BfaI	CTAG	2 cut(s)	8, 314
BfmI	CTRYAG	1 cut(s)	139
BisI	GCNGC	3 cut(s)	14, 142, 272
BlpI	GCTNAGC	1 cut(s)	731
BlsI	GCNGC	3 cut(s)	15, 143, 273
Bme1390I	CCNGG	3 cut(s)	254, 561, 679
BmgT120I	GGNCC	2 cut(s)	4, 334
BmiI	GGNNCC	2 cut(s)	335, 448
BmrFI	CCNGG	3 cut(s)	254, 561, 679
BmsI	GCATC	1 cut(s)	540
BpiI	GAAGAC	1 cut(s)	409
Bpu1102I	GCTNAGC	1 cut(s)	731
Bpu14I	TTCGAA	1 cut(s)	659
BpuMI	CCSGG	1 cut(s)	679
BsaJI	CCNNGG	2 cut(s)	559, 692
BsaXI	ACNNNNNCTCC	2 cut(s)	673, 703
Bsc4I	CCNNNNNNNGG	4 cut(s)	326, 365, 527, 590
Bse118I	RCCGGY	1 cut(s)	443
Bse1I	ACTGG	3 cut(s)	170, 456, 584
BseBI	CCWGG	2 cut(s)	254, 561
BseDI	CCNNGG	2 cut(s)	559, 692
BseGI	GGATG	1 cut(s)	262
BseLI	CCNNNNNNNGG	4 cut(s)	326, 365, 527, 590
BseMII	CTCAG	2 cut(s)	485, 745
BseNI	ACTGG	3 cut(s)	170, 456, 584
BseSI	GKGCMC	2 cut(s)	165, 281
BseXI	GCAGC	2 cut(s)	25, 153
Bsh1236I	CGCG	1 cut(s)	400
Bsh1285I	CGRYCG	1 cut(s)	331
BshFI	GGCC	3 cut(s)	5, 205, 336
BshNI	GGYRCC	1 cut(s)	446
BsiEI	CGRYCG	1 cut(s)	331
BsiHKAI	GWGCWC	1 cut(s)	165
BsiSI	CCGG	2 cut(s)	444, 678
BslFI	GGGAC	1 cut(s)	302
BslI	CCNNNNNNNGG	4 cut(s)	326, 365, 527, 590
BsmFI	GGGAC	1 cut(s)	302
BsnI	GGCC	3 cut(s)	5, 205, 336
Bsp119I	TTCGAA	1 cut(s)	659
Bsp1286I	GDGCHC	3 cut(s)	165, 239, 281
Bsp1407I	TGTACA	1 cut(s)	648
Bsp1720I	GCTNAGC	1 cut(s)	731
BspACI	CCGC	6 cut(s)	186, 239, 272, 398, 420, 684
BspANI	GGCC	3 cut(s)	5, 205, 336
BspCNI	CTCAG	2 cut(s)	484, 744
BspFNI	CGCG	1 cut(s)	400
BspLI	GGNNCC	2 cut(s)	335, 448
BspMAI	CTGCAG	1 cut(s)	143
BspT104I	TTCGAA	1 cut(s)	659
BspT107I	GGYRCC	1 cut(s)	446
BsrBI	CCGCTC	1 cut(s)	684
BsrFI	RCCGGY	1 cut(s)	443
BsrGI	TGTACA	1 cut(s)	648
BsrI	ACTGG	3 cut(s)	170, 456, 584
BssAI	RCCGGY	1 cut(s)	443
BssECI	CCNNGG	2 cut(s)	559, 692
BssNAI	GTATAC	1 cut(s)	613
BssT1I	CCWWGG	1 cut(s)	692
Bst1107I	GTATAC	1 cut(s)	613
Bst2UI	CCWGG	2 cut(s)	254, 561
Bst4CI	ACNGT	2 cut(s)	329, 503
Bst6I	CTCTTC	2 cut(s)	200, 758
BstAPI	GCANNNNNTGC	2 cut(s)	147, 712
BstAUI	TGTACA	1 cut(s)	648
BstBI	TTCGAA	1 cut(s)	659
BstC8I	GCNNGC	3 cut(s)	203, 239, 717
BstDEI	CTNAG	2 cut(s)	471, 731
BstEII	GGTNACC	1 cut(s)	188
BstF5I	GGATG	1 cut(s)	262
BstFNI	CGCG	1 cut(s)	400
BstMCI	CGRYCG	1 cut(s)	331
BstMWI	GCNNNNNNNGC	7 cut(s)	147, 207, 268, 285, 355, 564, 712
BstNI	CCWGG	2 cut(s)	254, 561
BstNSI	RCATGY	1 cut(s)	710
BstPI	GGTNACC	1 cut(s)	188
BstSCI	CCNGG	3 cut(s)	252, 559, 677
BstSFI	CTRYAG	1 cut(s)	139
BstSLI	GKGCMC	2 cut(s)	165, 281
BstUI	CGCG	1 cut(s)	400
BstV1I	GCAGC	2 cut(s)	25, 153
BstV2I	GAAGAC	1 cut(s)	409
BstZ17I	GTATAC	1 cut(s)	613
BsuRI	GGCC	3 cut(s)	5, 205, 336
BtsCI	GGATG	1 cut(s)	262
BtsI	GCAGTG	2 cut(s)	281, 537
BtsIMutI	CAGTG	2 cut(s)	281, 537
Cac8I	GCNNGC	3 cut(s)	203, 239, 717
CaiI	CAGNNNCTG	1 cut(s)	110
Cfr10I	RCCGGY	1 cut(s)	443
Cfr13I	GGNCC	2 cut(s)	4, 334
Csp6I	GTAC	3 cut(s)	447, 649, 667
CspCI	CAANNNNNGTGG	2 cut(s)	106, 141
CviAII	CATG	1 cut(s)	707
CviQI	GTAC	3 cut(s)	447, 649, 667
DdeI	CTNAG	2 cut(s)	471, 731
DrdI	GACNNNNNNGTC	1 cut(s)	411
DseDI	GACNNNNNNGTC	1 cut(s)	411
Eam1104I	CTCTTC	2 cut(s)	200, 758
EarI	CTCTTC	2 cut(s)	200, 758
Eco130I	CCWWGG	1 cut(s)	692
Eco24I	GRGCYC	1 cut(s)	239
Eco57I	CTGAAG	2 cut(s)	209, 315
Eco91I	GGTNACC	1 cut(s)	188
EcoO65I	GGTNACC	1 cut(s)	188
EcoRI	GAATTC	1 cut(s)	661
EcoRII	CCWGG	2 cut(s)	252, 559
EcoT14I	CCWWGG	1 cut(s)	692
EcoT38I	GRGCYC	1 cut(s)	239
ErhI	CCWWGG	1 cut(s)	692
FaeI	CATG	1 cut(s)	710
FaqI	GGGAC	1 cut(s)	302
FatI	CATG	1 cut(s)	706
FauI	CCCGC	2 cut(s)	246, 413
FauNDI	CATATG	1 cut(s)	146
FblI	GTMKAC	1 cut(s)	612
Fnu4HI	GCNGC	3 cut(s)	14, 142, 272
FokI	GGATG	1 cut(s)	269
FriOI	GRGCYC	1 cut(s)	239
Fsp4HI	GCNGC	3 cut(s)	14, 142, 272
FspBI	CTAG	2 cut(s)	8, 314
GluI	GCNGC	3 cut(s)	14, 142, 272
HaeIII	GGCC	3 cut(s)	5, 205, 336
HapII	CCGG	2 cut(s)	444, 678
Hin1II	CATG	1 cut(s)	710
HincII	GTYRAC	1 cut(s)	427
HindII	GTYRAC	1 cut(s)	427
HinfI	GANTC	4 cut(s)	44, 107, 155, 305
HpaII	CCGG	2 cut(s)	444, 678
HphI	GGTGA	2 cut(s)	169, 182
Hpy166II	GTNNAC	5 cut(s)	163, 427, 506, 613, 651
Hpy188I	TCNGA	5 cut(s)	94, 112, 247, 489, 788
Hpy188III	TCNNGA	2 cut(s)	23, 232
Hpy8I	GTNNAC	5 cut(s)	163, 427, 506, 613, 651
HpyAV	CCTTC	2 cut(s)	696, 785
HpyCH4III	ACNGT	2 cut(s)	329, 503
HpyCH4IV	ACGT	1 cut(s)	465
HpyCH4V	TGCA	6 cut(s)	141, 163, 210, 288, 553, 715
HpyF10VI	GCNNNNNNNGC	7 cut(s)	147, 207, 268, 285, 355, 564, 712
HpyF3I	CTNAG	2 cut(s)	471, 731
HpySE526I	ACGT	1 cut(s)	465
Hsp92II	CATG	1 cut(s)	710
KpnI	GGTACC	1 cut(s)	450
LmnI	GCTCC	1 cut(s)	681
Lsp1109I	GCAGC	2 cut(s)	25, 153
LweI	GCATC	1 cut(s)	540
MaeI	CTAG	2 cut(s)	8, 314
MaeII	ACGT	1 cut(s)	465
MaeIII	GTNAC	6 cut(s)	100, 175, 188, 466, 533, 629
MbiI	CCGCTC	1 cut(s)	684
MboII	GAAGA	4 cut(s)	187, 300, 414, 745
MhlI	GDGCHC	3 cut(s)	165, 239, 281
MluCI	AATT	3 cut(s)	130, 588, 661
MlyI	GAGTC	3 cut(s)	38, 101, 149
MnlI	CCTC	6 cut(s)	19, 191, 203, 253, 370, 761
MspI	CCGG	2 cut(s)	444, 678
MspR9I	CCNGG	3 cut(s)	254, 561, 679
MvaI	CCWGG	2 cut(s)	254, 561
MvnI	CGCG	1 cut(s)	400
MwoI	GCNNNNNNNGC	7 cut(s)	147, 207, 268, 285, 355, 564, 712
NciI	CCSGG	1 cut(s)	679
NdeI	CATATG	1 cut(s)	146
NlaIII	CATG	1 cut(s)	710
NlaIV	GGNNCC	2 cut(s)	335, 448
NmuCI	GTSAC	3 cut(s)	100, 175, 188
NspI	RCATGY	1 cut(s)	710
NspV	TTCGAA	1 cut(s)	659
PfeI	GAWTC	1 cut(s)	305
PflMI	CCANNNNNTGG	1 cut(s)	590
PkrI	GCNGC	3 cut(s)	15, 143, 273
PleI	GAGTC	3 cut(s)	38, 101, 149
PpsI	GAGTC	3 cut(s)	38, 101, 149
Psp6I	CCWGG	2 cut(s)	252, 559
PspEI	GGTNACC	1 cut(s)	188
PspGI	CCWGG	2 cut(s)	252, 559
PspN4I	GGNNCC	2 cut(s)	335, 448
PspPI	GGNCC	2 cut(s)	4, 334
PsrI	GAACNNNNNNTAC	2 cut(s)	430, 462
PstI	CTGCAG	1 cut(s)	143
PstNI	CAGNNNCTG	1 cut(s)	110
RsaI	GTAC	3 cut(s)	448, 650, 668
RsaNI	GTAC	3 cut(s)	447, 649, 667
SatI	GCNGC	3 cut(s)	14, 142, 272
Sau96I	GGNCC	2 cut(s)	4, 334
SchI	GAGTC	3 cut(s)	38, 101, 149
ScrFI	CCNGG	3 cut(s)	254, 561, 679
SduI	GDGCHC	3 cut(s)	165, 239, 281
SetI	ASST	4 cut(s)	195, 295, 409, 468
SfaNI	GCATC	1 cut(s)	540
SfcI	CTRYAG	1 cut(s)	139
SfuI	TTCGAA	1 cut(s)	659
Sse9I	AATT	3 cut(s)	130, 588, 661
SsiI	CCGC	6 cut(s)	186, 239, 272, 398, 420, 684
SspMI	CTAG	2 cut(s)	8, 314
StyD4I	CCNGG	3 cut(s)	252, 559, 677
StyI	CCWWGG	1 cut(s)	692
TaaI	ACNGT	2 cut(s)	329, 503
TaiI	ACGT	1 cut(s)	468
TaqI	TCGA	2 cut(s)	135, 659
TasI	AATT	3 cut(s)	130, 588, 661
TatI	WGTACW	1 cut(s)	648
TauI	GCSGC	1 cut(s)	274
TfiI	GAWTC	1 cut(s)	305
TscAI	CASTG	2 cut(s)	281, 544
TseFI	GTSAC	3 cut(s)	100, 175, 188
TseI	GCWGC	2 cut(s)	13, 141
Tsp45I	GTSAC	3 cut(s)	100, 175, 188
TspDTI	ATGAA	2 cut(s)	111, 318
TspRI	CASTG	2 cut(s)	281, 544
Van91I	CCANNNNNTGG	1 cut(s)	590
VneI	GTGCAC	1 cut(s)	161
XapI	RAATTY	1 cut(s)	661
XceI	RCATGY	1 cut(s)	710
XmiI	GTMKAC	1 cut(s)	612
XspI	CTAG	2 cut(s)	8, 314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.