Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0008226

Physical Location & Seq

Genomic Coordinates Reverse (-)

20023077 .. 20025606

Gene Structure 2530 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g26170.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGCAACAGAGCAATACTTTGAAGATGCTGTGGTCCAGTCTAATTCCAGTGGAGACGCTAAATGTTCCTTCGGAAAATGGAATCCTGTTTCTGAAGTCCCAGATACTGAAAACAAGTCATGTGCTAACTTCGACTGCAGCATTTGCTTAGACTCTGTGCGCGATCCGGTGGTTACCCTCTGTGGTCATTTATACTGCTGGCCTTGCATATACAAGTGGATTCAATTCCAGACCCCTTCTTCGGAAAGCCAAGAGGACCAAAAACAGCCACAGTGCCCTGTTTGCAAAACTGAAGTCTCTGAATCCTCTCTAGTCCCACTTTATGGTCGTGGTCAAACAACAAAGCCCACAAAGCCATCTAAAGGCAAGCCTCCCCATCTTGGTATAGTCATTCCAAAAAGACCTCTCGCTCCTTGCGCGGTTGACACACCACGAACCCCAAGTACCAGCCCTTATAGTATTCAGCGAAGTCATCCTTATCAATCCCAAATAAACAGCCCTTTAGGAGGTAGCTATACAGCAGCTTCACCAATGCATAGTCCTGGTGATACATCAACACAAGTCTTCAATCCGATGGTCGGCATGTTTGGTGAAATGGTGTATGCTAGGGTGTTTGGTAACTCGATAACAAATGTTTACACTTACCCGAATTCGTATAATCTTACTGGCAGCACTAGTCCGAGGGTGAGAAGGCATGTAATGCAGGCTGATAAGTCACTCAACAGAATGTGTTTATTTCTGTTTTGTTGCTTCTTGTTGTGCCTAATTTTGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009611 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010243 GO:0010498 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031984 GO:0032446 GO:0032527 GO:0032991 GO:0033036 GO:0033554 GO:0034613 GO:0034976 GO:0035966 GO:0035967 GO:0036211 GO:0036503 GO:0036513 GO:0042175 GO:0042221 GO:0042886 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050896 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0051788 GO:0070647 GO:0070727 GO:0070887 GO:0071218 GO:0071310 GO:0071702 GO:0071704 GO:0071705 GO:0071712 GO:0098796 GO:0098827 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

zf-C3HC4 zf-C3HC4_2 zf-RING_UBOX

Protein Analysis

259

Amino Acids

28.58

Weight (kDa)

8.16

Isoelectric Point (pI)

49.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	45 - 101	1.6e-06	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	45 - 96	1.6e-06	Ring finger domain
RING_XB3-XBAT31	PF24921	46 - 100	3.2e-10	E3 ubiquitin-protein ligase XB3/XBAT31 RING finger
zf-C3HC4	PF00097	46 - 95	4.2e-10	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	46 - 93	7.4e-10	RING-type zinc-finger
zf-C3HC4_2	PF13923	46 - 75	1.7e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_5	PF14634	46 - 97	8.9e-06	zinc-RING finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0008226)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03510 AT4G03510 AT4G03510 AT4G03510
fragaria_vesca	FvH4_6g26170
malus_domestica	MD09G1248700.v1.1 MD17G1241200.v1.1
prunus_persica	Prupe.3G137000_v2.0.a1
pyrus_communis	pycom09g16560 pycom17g24430 pycom17g24440 pycom17g24450
rosa_chinensis	RchiOBHm_Chr2g0126321
rosa_laevigata	RLG00000018901
rosa_multiflora	Rmu_ssc0000264.1_g000040
rosa_roxburghii	Rroxscaffold_2G00117240
rosa_rugosa	Rorug02G0262600 Rorug02G0262700
rosa_samantha	Rh2AG319500 Rh2BG327900 Rh2CG307800 Rh2DG347600
rosa_wichuraiana	Rw2G025890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	323
AccII	CGCG	2 cut(s)	162, 419
AciI	CCGC	1 cut(s)	419
AclWI	GGATC	1 cut(s)	158
AcsI	RAATTY	1 cut(s)	649
AcuI	CTGAAG	2 cut(s)	114, 312
AfaI	GTAC	1 cut(s)	445
AfiI	CCNNNNNNNGG	6 cut(s)	241, 323, 362, 380, 506, 578
AgsI	TTSAA	3 cut(s)	23, 224, 568
AhlI	ACTAGT	1 cut(s)	674
AjnI	CCWGG	1 cut(s)	541
AluBI	AGCT	2 cut(s)	513, 524
AluI	AGCT	2 cut(s)	513, 524
Alw26I	GTCTC	2 cut(s)	48, 301
AlwI	GGATC	1 cut(s)	158
AlwNI	CAGNNNCTG	1 cut(s)	107
AoxI	GGCC	1 cut(s)	200
ApeKI	GCWGC	3 cut(s)	138, 521, 669
ApoI	RAATTY	1 cut(s)	649
ArsI	GACNNNNNNTTYG	4 cut(s)	223, 255, 279, 311
AspLEI	GCGC	2 cut(s)	162, 419
AspS9I	GGNCC	2 cut(s)	34, 256
AsuHPI	GGTGA	4 cut(s)	519, 557, 602, 697
AvaII	GGWCC	2 cut(s)	34, 256
BaeGI	GKGCMC	1 cut(s)	278
BbsI	GAAGAC	1 cut(s)	556
BbvI	GCAGC	3 cut(s)	150, 533, 681
BccI	CCATC	3 cut(s)	364, 384, 568
BciT130I	CCWGG	1 cut(s)	543
BcoDI	GTCTC	2 cut(s)	48, 301
BcuI	ACTAGT	1 cut(s)	674
BfaI	CTAG	3 cut(s)	311, 606, 675
BfmI	CTRYAG	1 cut(s)	136
BisI	GCNGC	3 cut(s)	139, 522, 670
BlsI	GCNGC	3 cut(s)	140, 523, 671
Bme1390I	CCNGG	1 cut(s)	543
Bme18I	GGWCC	2 cut(s)	34, 256
BmgT120I	GGNCC	2 cut(s)	34, 256
BmrFI	CCNGG	1 cut(s)	543
BmsI	GCATC	1 cut(s)	16
BpiI	GAAGAC	1 cut(s)	556
BsaJI	CCNNGG	1 cut(s)	680
BsaWI	WCCGGW	1 cut(s)	166
Bsc4I	CCNNNNNNNGG	6 cut(s)	241, 323, 362, 380, 506, 578
Bse1I	ACTGG	3 cut(s)	37, 48, 670
BseBI	CCWGG	1 cut(s)	543
BseDI	CCNNGG	1 cut(s)	680
BseGI	GGATG	1 cut(s)	472
BseLI	CCNNNNNNNGG	6 cut(s)	241, 323, 362, 380, 506, 578
BseNI	ACTGG	3 cut(s)	37, 48, 670
BseSI	GKGCMC	1 cut(s)	278
BseXI	GCAGC	3 cut(s)	150, 533, 681
Bsh1236I	CGCG	2 cut(s)	162, 419
BshFI	GGCC	1 cut(s)	202
BsiSI	CCGG	1 cut(s)	167
BslFI	GGGAC	2 cut(s)	83, 299
BslI	CCNNNNNNNGG	6 cut(s)	241, 323, 362, 380, 506, 578
BsmAI	GTCTC	2 cut(s)	48, 301
BsmBI	CGTCTC	1 cut(s)	48
BsmFI	GGGAC	2 cut(s)	83, 299
BsnI	GGCC	1 cut(s)	202
Bsp1286I	GDGCHC	1 cut(s)	278
Bsp143I	GATC	1 cut(s)	163
BspACI	CCGC	1 cut(s)	419
BspANI	GGCC	1 cut(s)	202
BspFNI	CGCG	2 cut(s)	162, 419
BspMAI	CTGCAG	1 cut(s)	140
BspPI	GGATC	1 cut(s)	158
BsrI	ACTGG	3 cut(s)	37, 48, 670
BssECI	CCNNGG	1 cut(s)	680
BssMI	GATC	1 cut(s)	163
Bst2UI	CCWGG	1 cut(s)	543
Bst4CI	ACNGT	1 cut(s)	273
BstAPI	GCANNNNNTGC	2 cut(s)	144, 700
BstC8I	GCNNGC	3 cut(s)	200, 368, 705
BstDEI	CTNAG	1 cut(s)	148
BstEII	GGTNACC	1 cut(s)	172
BstENI	CCTNNNNNAGG	1 cut(s)	504
BstF5I	GGATG	1 cut(s)	472
BstFNI	CGCG	2 cut(s)	162, 419
BstHHI	GCGC	2 cut(s)	162, 419
BstKTI	GATC	1 cut(s)	166
BstMAI	GTCTC	2 cut(s)	48, 301
BstMBI	GATC	1 cut(s)	163
BstMWI	GCNNNNNNNGC	6 cut(s)	144, 204, 282, 352, 416, 700
BstNI	CCWGG	1 cut(s)	543
BstNSI	RCATGY	2 cut(s)	586, 698
BstPI	GGTNACC	1 cut(s)	172
BstSCI	CCNGG	1 cut(s)	541
BstSFI	CTRYAG	1 cut(s)	136
BstSLI	GKGCMC	1 cut(s)	278
BstUI	CGCG	2 cut(s)	162, 419
BstV1I	GCAGC	3 cut(s)	150, 533, 681
BstV2I	GAAGAC	1 cut(s)	556
BsuRI	GGCC	1 cut(s)	202
BtsCI	GGATG	1 cut(s)	472
BtsIMutI	CAGTG	2 cut(s)	55, 278
Cac8I	GCNNGC	3 cut(s)	200, 368, 705
CaiI	CAGNNNCTG	1 cut(s)	107
CfoI	GCGC	2 cut(s)	162, 419
Cfr13I	GGNCC	2 cut(s)	34, 256
CseI	GACGC	1 cut(s)	65
Csp6I	GTAC	1 cut(s)	444
CviAII	CATG	3 cut(s)	120, 583, 695
CviQI	GTAC	1 cut(s)	444
DdeI	CTNAG	1 cut(s)	148
DpnI	GATC	1 cut(s)	165
DpnII	GATC	1 cut(s)	163
Eco47I	GGWCC	2 cut(s)	34, 256
Eco57I	CTGAAG	2 cut(s)	114, 312
Eco91I	GGTNACC	1 cut(s)	172
EcoNI	CCTNNNNNAGG	1 cut(s)	504
EcoO65I	GGTNACC	1 cut(s)	172
EcoRI	GAATTC	1 cut(s)	649
EcoRII	CCWGG	1 cut(s)	541
EcoT22I	ATGCAT	1 cut(s)	537
Esp3I	CGTCTC	1 cut(s)	48
FaeI	CATG	3 cut(s)	123, 586, 698
FalI	AAGNNNNNCTT	2 cut(s)	460, 492
FaqI	GGGAC	2 cut(s)	83, 299
FatI	CATG	3 cut(s)	119, 582, 694
Fnu4HI	GCNGC	3 cut(s)	139, 522, 670
FokI	GGATG	1 cut(s)	459
Fsp4HI	GCNGC	3 cut(s)	139, 522, 670
FspBI	CTAG	3 cut(s)	311, 606, 675
GlaI	GCGC	2 cut(s)	161, 418
GluI	GCNGC	3 cut(s)	139, 522, 670
HaeIII	GGCC	1 cut(s)	202
HapII	CCGG	1 cut(s)	167
HgaI	GACGC	1 cut(s)	65
HhaI	GCGC	2 cut(s)	162, 419
Hin1II	CATG	3 cut(s)	123, 586, 698
Hin6I	GCGC	2 cut(s)	160, 417
HinP1I	GCGC	2 cut(s)	160, 417
HincII	GTYRAC	1 cut(s)	424
HindII	GTYRAC	1 cut(s)	424
HinfI	GANTC	4 cut(s)	82, 152, 220, 302
HpaII	CCGG	1 cut(s)	167
HphI	GGTGA	4 cut(s)	519, 557, 602, 697
Hpy166II	GTNNAC	2 cut(s)	424, 637
Hpy188I	TCNGA	6 cut(s)	74, 94, 244, 301, 573, 681
Hpy188III	TCNNGA	1 cut(s)	229
Hpy8I	GTNNAC	2 cut(s)	424, 637
HpyAV	CCTTC	3 cut(s)	79, 246, 684
HpyCH4III	ACNGT	1 cut(s)	273
HpyCH4V	TGCA	5 cut(s)	138, 207, 285, 535, 703
HpyF10VI	GCNNNNNNNGC	6 cut(s)	144, 204, 282, 352, 416, 700
HpyF3I	CTNAG	1 cut(s)	148
Hsp92II	CATG	3 cut(s)	123, 586, 698
HspAI	GCGC	2 cut(s)	160, 417
Kzo9I	GATC	1 cut(s)	163
LmnI	GCTCC	1 cut(s)	415
Lsp1109I	GCAGC	3 cut(s)	150, 533, 681
LweI	GCATC	1 cut(s)	16
MaeI	CTAG	3 cut(s)	311, 606, 675
MaeIII	GTNAC	3 cut(s)	172, 617, 714
MalI	GATC	1 cut(s)	165
MboI	GATC	1 cut(s)	163
MboII	GAAGA	3 cut(s)	35, 231, 556
MhlI	GDGCHC	1 cut(s)	278
MluCI	AATT	4 cut(s)	43, 224, 649, 765
MlyI	GAGTC	1 cut(s)	146
MnlI	CCTC	7 cut(s)	188, 247, 316, 381, 414, 500, 675
Mph1103I	ATGCAT	1 cut(s)	537
MspI	CCGG	1 cut(s)	167
MspR9I	CCNGG	1 cut(s)	543
MvaI	CCWGG	1 cut(s)	543
MvnI	CGCG	2 cut(s)	162, 419
MwoI	GCNNNNNNNGC	6 cut(s)	144, 204, 282, 352, 416, 700
NdeII	GATC	1 cut(s)	163
NlaIII	CATG	3 cut(s)	123, 586, 698
NmuCI	GTSAC	1 cut(s)	714
NsiI	ATGCAT	1 cut(s)	537
NspI	RCATGY	2 cut(s)	586, 698
PfeI	GAWTC	3 cut(s)	82, 220, 302
PflMI	CCANNNNNTGG	1 cut(s)	323
PkrI	GCNGC	3 cut(s)	140, 523, 671
PleI	GAGTC	1 cut(s)	146
PpsI	GAGTC	1 cut(s)	146
Psp6I	CCWGG	1 cut(s)	541
PspEI	GGTNACC	1 cut(s)	172
PspGI	CCWGG	1 cut(s)	541
PspPI	GGNCC	2 cut(s)	34, 256
PsrI	GAACNNNNNNTAC	2 cut(s)	427, 459
PstI	CTGCAG	1 cut(s)	140
PstNI	CAGNNNCTG	1 cut(s)	107
RsaI	GTAC	1 cut(s)	445
RsaNI	GTAC	1 cut(s)	444
SatI	GCNGC	3 cut(s)	139, 522, 670
Sau3AI	GATC	1 cut(s)	163
Sau96I	GGNCC	2 cut(s)	34, 256
SchI	GAGTC	1 cut(s)	146
ScrFI	CCNGG	1 cut(s)	543
SduI	GDGCHC	1 cut(s)	278
SetI	ASST	4 cut(s)	406, 511, 515, 526
SfaNI	GCATC	1 cut(s)	16
SfcI	CTRYAG	1 cut(s)	136
SinI	GGWCC	2 cut(s)	34, 256
SpeI	ACTAGT	1 cut(s)	674
Sse9I	AATT	4 cut(s)	43, 224, 649, 765
SsiI	CCGC	1 cut(s)	419
SspMI	CTAG	3 cut(s)	311, 606, 675
StyD4I	CCNGG	1 cut(s)	541
TaaI	ACNGT	1 cut(s)	273
TaqI	TCGA	2 cut(s)	132, 623
TasI	AATT	4 cut(s)	43, 224, 649, 765
TfiI	GAWTC	3 cut(s)	82, 220, 302
TscAI	CASTG	2 cut(s)	55, 278
TseFI	GTSAC	1 cut(s)	714
TseI	GCWGC	3 cut(s)	138, 521, 669
Tsp45I	GTSAC	1 cut(s)	714
TspRI	CASTG	2 cut(s)	55, 278
Van91I	CCANNNNNTGG	1 cut(s)	323
VpaK11BI	GGWCC	2 cut(s)	34, 256
XagI	CCTNNNNNAGG	1 cut(s)	504
XapI	RAATTY	1 cut(s)	649
XceI	RCATGY	2 cut(s)	586, 698
XspI	CTAG	3 cut(s)	311, 606, 675
Zsp2I	ATGCAT	1 cut(s)	537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.