Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0008226

Physical Location & Seq

Genomic Coordinates Reverse (-)

42493159 .. 42496491

Gene Structure 3333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018901

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGATCGCCCCGGTCAAAAAGATACCCGGCTCTTATTACGCGTTCACAAACAAAACCCACTTCTCTACTCTTGCTGATTTAAGCAACTCAAGAATACATCTGTCCCAATCCATTAAGATGGCAACAGAGCAATACTTTGAAGATGCTGTGGTCCAGTCTAACTCCATTGGAGATGATAAATGTTCATTTGGAAAATGGAATCCTGTTTCTGAAGTCGCAGAGTCTGAAAACAAGTCCTGTGGTAACTTCGACTGCAGCGTATGCTTAGACTCTGTGCACGATCCGGTGGTGACCCTCTGTGGCCATCTATACTGCTGGCCGTGCATATACAAGTGGATTCAGTTCCAGACTCCGTCTTCTGAAAACCAAGAGAACCAAAAACAGCCACAGTGCCCTGTTTGCAAAACTGAAATCTCCGAATCCTCTCTAGTCCCACTCTATGGTCGTGGTCAAACAACGAAGCCCACAAAGCCATCTAAAGGCAAGGCTCCCAATCTTGGTATAGTCATTCCAAAAAGACCTCTCGCTCCTTGCGTGGTTGACACACCACGAACCCCAAGTACCAGCCCTTACGGTACTCAGCAACTCCATCACCGGATTAATCCTTATCAATCCCAACTGAACAGCCCTCAAGGAGGTAGTTATGCAGCTGCTGCTTTACCGATGCATGGTCATGGTCCTGGTGATACAGCAACACAAGTCTTAAATCCGATGGTCGGCTTGTTTGGTGAAATGGTGTATGCTAGGGTGTTTGGTAACTCGATAACAAATGTCTACACATACCCTAATTCGTATAATCTTGCTGGCAGCACTAGTCCTAGGTTAGGATCAACTTTTGGAATTGATACTTCTGGTAACATTGACGACGTTATGTGCTTCCTCTGCTTCCAAGAAGTAGAGAAATATAAATGGTCGATTCGAAGCACTTCAACTCCCGGCCAAAAGAATAAGACTTGTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009611 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010243 GO:0010498 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031984 GO:0032446 GO:0032527 GO:0032991 GO:0033036 GO:0033554 GO:0034613 GO:0034976 GO:0035966 GO:0035967 GO:0036211 GO:0036503 GO:0036513 GO:0042175 GO:0042221 GO:0042886 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050896 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0051788 GO:0070647 GO:0070727 GO:0070887 GO:0071218 GO:0071310 GO:0071702 GO:0071704 GO:0071705 GO:0071712 GO:0098796 GO:0098827 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

zf-C3HC4 zf-C3HC4_2 zf-RING_UBOX

Protein Analysis

321

Amino Acids

35.09

Weight (kDa)

7.9

Isoelectric Point (pI)

43.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RING_XB3-XBAT31	PF24921	85 - 139	8.7e-10	E3 ubiquitin-protein ligase XB3/XBAT31 RING finger
zf-RING_UBOX	PF13445	85 - 132	2.8e-09	RING-type zinc-finger
zf-C3HC4	PF00097	85 - 134	6.1e-09	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	85 - 114	7.2e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008226)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03510 AT4G03510 AT4G03510 AT4G03510
fragaria_vesca	FvH4_6g26170
malus_domestica	MD09G1248700.v1.1 MD17G1241200.v1.1
prunus_persica	Prupe.3G137000_v2.0.a1
pyrus_communis	pycom09g16560 pycom17g24430 pycom17g24440 pycom17g24450
rosa_chinensis	RchiOBHm_Chr2g0126321
rosa_laevigata	RLG00000018901
rosa_multiflora	Rmu_ssc0000264.1_g000040
rosa_roxburghii	Rroxscaffold_2G00117240
rosa_rugosa	Rorug02G0262600 Rorug02G0262700
rosa_samantha	Rh2AG319500 Rh2BG327900 Rh2CG307800 Rh2DG347600
rosa_wichuraiana	Rw2G025890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	440
AccI	GTMKAC	1 cut(s)	774
AccII	CGCG	1 cut(s)	41
AclWI	GGATC	2 cut(s)	275, 835
AcoI	YGGCCR	3 cut(s)	301, 317, 937
AcuI	CTGAAG	1 cut(s)	231
AfaI	GTAC	2 cut(s)	562, 577
AfiI	CCNNNNNNNGG	7 cut(s)	440, 479, 497, 635, 668, 716, 824
AflIII	ACRYGT	1 cut(s)	39
AgsI	TTSAA	2 cut(s)	140, 930
AhlI	ACTAGT	1 cut(s)	812
AjnI	CCWGG	1 cut(s)	679
AluBI	AGCT	1 cut(s)	650
AluI	AGCT	1 cut(s)	650
Alw21I	GWGCWC	1 cut(s)	279
Alw44I	GTGCAC	1 cut(s)	275
AlwI	GGATC	2 cut(s)	275, 835
AlwNI	CAGNNNCTG	2 cut(s)	224, 653
AoxI	GGCC	3 cut(s)	301, 317, 937
ApaLI	GTGCAC	1 cut(s)	275
ApeKI	GCWGC	5 cut(s)	255, 647, 650, 653, 807
AseI	ATTAAT	1 cut(s)	600
Asp700I	GAANNNNTTC	1 cut(s)	925
AspA2I	CCTAGG	1 cut(s)	818
AspS9I	GGNCC	2 cut(s)	151, 677
AsuC2I	CCSGG	3 cut(s)	11, 27, 936
AsuHPI	GGTGA	4 cut(s)	301, 584, 695, 740
AsuII	TTCGAA	1 cut(s)	919
AvaII	GGWCC	2 cut(s)	151, 677
AvrII	CCTAGG	1 cut(s)	818
BaeGI	GKGCMC	2 cut(s)	279, 395
BalI	TGGCCA	1 cut(s)	303
BbsI	GAAGAC	1 cut(s)	348
Bbv12I	GWGCWC	1 cut(s)	279
BbvI	GCAGC	5 cut(s)	267, 637, 640, 659, 819
BccI	CCATC	5 cut(s)	112, 312, 481, 597, 706
BceAI	ACGGC	1 cut(s)	304
BciT130I	CCWGG	1 cut(s)	681
BcnI	CCSGG	3 cut(s)	11, 27, 936
BcuI	ACTAGT	1 cut(s)	812
BfaI	CTAG	4 cut(s)	428, 744, 813, 819
BfmI	CTRYAG	1 cut(s)	253
BisI	GCNGC	5 cut(s)	256, 648, 651, 654, 808
BlnI	CCTAGG	1 cut(s)	818
BlsI	GCNGC	5 cut(s)	257, 649, 652, 655, 809
Bme1390I	CCNGG	4 cut(s)	11, 27, 681, 936
Bme18I	GGWCC	2 cut(s)	151, 677
BmgT120I	GGNCC	2 cut(s)	151, 677
BmiI	GGNNCC	1 cut(s)	489
BmrFI	CCNGG	4 cut(s)	11, 27, 681, 936
BmsI	GCATC	2 cut(s)	133, 654
BpiI	GAAGAC	1 cut(s)	348
Bpu14I	TTCGAA	1 cut(s)	919
BpuEI	CTTGAG	2 cut(s)	73, 615
BpuMI	CCSGG	3 cut(s)	11, 27, 936
BsaJI	CCNNGG	2 cut(s)	9, 818
BsaWI	WCCGGW	2 cut(s)	283, 594
BsaXI	ACNNNNNCTCC	2 cut(s)	916, 946
Bsc4I	CCNNNNNNNGG	7 cut(s)	440, 479, 497, 635, 668, 716, 824
Bse1I	ACTGG	1 cut(s)	154
BseBI	CCWGG	1 cut(s)	681
BseDI	CCNNGG	2 cut(s)	9, 818
BseLI	CCNNNNNNNGG	7 cut(s)	440, 479, 497, 635, 668, 716, 824
BseMII	CTCAG	1 cut(s)	593
BseNI	ACTGG	1 cut(s)	154
BseSI	GKGCMC	2 cut(s)	279, 395
BseXI	GCAGC	5 cut(s)	267, 637, 640, 659, 819
Bsh1236I	CGCG	1 cut(s)	41
BshFI	GGCC	3 cut(s)	303, 319, 939
BsiHKAI	GWGCWC	1 cut(s)	279
BsiSI	CCGG	5 cut(s)	11, 27, 284, 595, 936
BslFI	GGGAC	2 cut(s)	88, 416
BslI	CCNNNNNNNGG	7 cut(s)	440, 479, 497, 635, 668, 716, 824
BsmFI	GGGAC	2 cut(s)	88, 416
BsnI	GGCC	3 cut(s)	303, 319, 939
Bsp119I	TTCGAA	1 cut(s)	919
Bsp1286I	GDGCHC	2 cut(s)	279, 395
Bsp143I	GATC	3 cut(s)	3, 280, 827
BspANI	GGCC	3 cut(s)	303, 319, 939
BspCNI	CTCAG	1 cut(s)	592
BspFNI	CGCG	1 cut(s)	41
BspLI	GGNNCC	1 cut(s)	489
BspMAI	CTGCAG	1 cut(s)	257
BspPI	GGATC	2 cut(s)	275, 835
BspT104I	TTCGAA	1 cut(s)	919
BsrI	ACTGG	1 cut(s)	154
BssECI	CCNNGG	2 cut(s)	9, 818
BssMI	GATC	3 cut(s)	3, 280, 827
BssT1I	CCWWGG	1 cut(s)	818
Bst2UI	CCWGG	1 cut(s)	681
Bst4CI	ACNGT	2 cut(s)	390, 575
BstAPI	GCANNNNNTGC	2 cut(s)	261, 653
BstBI	TTCGAA	1 cut(s)	919
BstC8I	GCNNGC	2 cut(s)	317, 805
BstDEI	CTNAG	2 cut(s)	265, 579
BstEII	GGTNACC	1 cut(s)	289
BstENI	CCTNNNNNAGG	2 cut(s)	633, 822
BstFNI	CGCG	1 cut(s)	41
BstKTI	GATC	3 cut(s)	6, 283, 830
BstMBI	GATC	3 cut(s)	3, 280, 827
BstMWI	GCNNNNNNNGC	6 cut(s)	261, 321, 399, 469, 653, 882
BstNI	CCWGG	1 cut(s)	681
BstPI	GGTNACC	1 cut(s)	289
BstSCI	CCNGG	4 cut(s)	9, 25, 679, 934
BstSFI	CTRYAG	1 cut(s)	253
BstSLI	GKGCMC	2 cut(s)	279, 395
BstUI	CGCG	1 cut(s)	41
BstV1I	GCAGC	5 cut(s)	267, 637, 640, 659, 819
BstV2I	GAAGAC	1 cut(s)	348
BstXI	CCANNNNNNTGG	1 cut(s)	118
BsuRI	GGCC	3 cut(s)	303, 319, 939
BtsIMutI	CAGTG	1 cut(s)	395
Cac8I	GCNNGC	2 cut(s)	317, 805
CaiI	CAGNNNCTG	2 cut(s)	224, 653
Cfr13I	GGNCC	2 cut(s)	151, 677
Csp6I	GTAC	2 cut(s)	561, 576
CspCI	CAANNNNNGTGG	2 cut(s)	220, 255
CviAII	CATG	2 cut(s)	668, 674
CviQI	GTAC	2 cut(s)	561, 576
DdeI	CTNAG	2 cut(s)	265, 579
DpnI	GATC	3 cut(s)	5, 282, 829
DpnII	GATC	3 cut(s)	3, 280, 827
EaeI	YGGCCR	3 cut(s)	301, 317, 937
Eco130I	CCWWGG	1 cut(s)	818
Eco47I	GGWCC	2 cut(s)	151, 677
Eco57I	CTGAAG	1 cut(s)	231
Eco91I	GGTNACC	1 cut(s)	289
EcoNI	CCTNNNNNAGG	2 cut(s)	633, 822
EcoO65I	GGTNACC	1 cut(s)	289
EcoRII	CCWGG	1 cut(s)	679
EcoT14I	CCWWGG	1 cut(s)	818
EcoT22I	ATGCAT	1 cut(s)	669
ErhI	CCWWGG	1 cut(s)	818
FaeI	CATG	2 cut(s)	671, 677
FaqI	GGGAC	2 cut(s)	88, 416
FatI	CATG	2 cut(s)	667, 673
FblI	GTMKAC	1 cut(s)	774
Fnu4HI	GCNGC	5 cut(s)	256, 648, 651, 654, 808
Fsp4HI	GCNGC	5 cut(s)	256, 648, 651, 654, 808
FspBI	CTAG	4 cut(s)	428, 744, 813, 819
GluI	GCNGC	5 cut(s)	256, 648, 651, 654, 808
HaeIII	GGCC	3 cut(s)	303, 319, 939
HapII	CCGG	5 cut(s)	11, 27, 284, 595, 936
Hin1II	CATG	2 cut(s)	671, 677
HincII	GTYRAC	1 cut(s)	541
HindII	GTYRAC	1 cut(s)	541
HinfI	GANTC	7 cut(s)	199, 221, 269, 337, 349, 419, 916
HpaII	CCGG	5 cut(s)	11, 27, 284, 595, 936
HphI	GGTGA	4 cut(s)	301, 584, 695, 740
Hpy166II	GTNNAC	4 cut(s)	45, 277, 541, 775
Hpy188I	TCNGA	5 cut(s)	211, 226, 361, 418, 711
Hpy188III	TCNNGA	2 cut(s)	90, 346
Hpy8I	GTNNAC	4 cut(s)	45, 277, 541, 775
Hpy99I	CGWCG	1 cut(s)	869
HpyCH4III	ACNGT	2 cut(s)	390, 575
HpyCH4IV	ACGT	1 cut(s)	867
HpyCH4V	TGCA	6 cut(s)	255, 277, 324, 402, 647, 667
HpyF10VI	GCNNNNNNNGC	6 cut(s)	261, 321, 399, 469, 653, 882
HpyF3I	CTNAG	2 cut(s)	265, 579
HpySE526I	ACGT	1 cut(s)	867
Hsp92II	CATG	2 cut(s)	671, 677
Kzo9I	GATC	3 cut(s)	3, 280, 827
LmnI	GCTCC	2 cut(s)	493, 532
Lsp1109I	GCAGC	5 cut(s)	267, 637, 640, 659, 819
LweI	GCATC	2 cut(s)	133, 654
MaeI	CTAG	4 cut(s)	428, 744, 813, 819
MaeII	ACGT	1 cut(s)	867
MaeIII	GTNAC	4 cut(s)	242, 289, 755, 854
MalI	GATC	3 cut(s)	5, 282, 829
MboI	GATC	3 cut(s)	3, 280, 827
MboII	GAAGA	2 cut(s)	152, 348
MhlI	GDGCHC	2 cut(s)	279, 395
MlsI	TGGCCA	1 cut(s)	303
MluCI	AATT	2 cut(s)	787, 840
MluI	ACGCGT	1 cut(s)	39
MluNI	TGGCCA	1 cut(s)	303
MlyI	GAGTC	3 cut(s)	230, 263, 343
MnlI	CCTC	6 cut(s)	305, 433, 531, 629, 639, 890
Mox20I	TGGCCA	1 cut(s)	303
Mph1103I	ATGCAT	1 cut(s)	669
MroXI	GAANNNNTTC	1 cut(s)	925
MscI	TGGCCA	1 cut(s)	303
MseI	TTAA	4 cut(s)	80, 114, 600, 704
MslI	CAYNNNNRTG	2 cut(s)	116, 672
Msp20I	TGGCCA	1 cut(s)	303
MspA1I	CMGCKG	1 cut(s)	650
MspI	CCGG	5 cut(s)	11, 27, 284, 595, 936
MspR9I	CCNGG	4 cut(s)	11, 27, 681, 936
MvaI	CCWGG	1 cut(s)	681
MvnI	CGCG	1 cut(s)	41
MwoI	GCNNNNNNNGC	6 cut(s)	261, 321, 399, 469, 653, 882
NciI	CCSGG	3 cut(s)	11, 27, 936
NdeII	GATC	3 cut(s)	3, 280, 827
NlaIII	CATG	2 cut(s)	671, 677
NlaIV	GGNNCC	1 cut(s)	489
NmuCI	GTSAC	1 cut(s)	289
NsiI	ATGCAT	1 cut(s)	669
NspV	TTCGAA	1 cut(s)	919
PcsI	WCGNNNNNNNCGW	2 cut(s)	255, 531
PdmI	GAANNNNTTC	1 cut(s)	925
PfeI	GAWTC	4 cut(s)	199, 337, 419, 916
PflFI	GACNNNGTC	1 cut(s)	352
PflMI	CCANNNNNTGG	1 cut(s)	440
PkrI	GCNGC	5 cut(s)	257, 649, 652, 655, 809
PleI	GAGTC	3 cut(s)	229, 263, 343
PpsI	GAGTC	3 cut(s)	229, 263, 343
PshBI	ATTAAT	1 cut(s)	600
Psp6I	CCWGG	1 cut(s)	679
PspEI	GGTNACC	1 cut(s)	289
PspGI	CCWGG	1 cut(s)	679
PspN4I	GGNNCC	1 cut(s)	489
PspPI	GGNCC	2 cut(s)	151, 677
PsrI	GAACNNNNNNTAC	2 cut(s)	544, 576
PstI	CTGCAG	1 cut(s)	257
PstNI	CAGNNNCTG	2 cut(s)	224, 653
PsyI	GACNNNGTC	1 cut(s)	352
PvuII	CAGCTG	1 cut(s)	650
RsaI	GTAC	2 cut(s)	562, 577
RsaNI	GTAC	2 cut(s)	561, 576
RseI	CAYNNNNRTG	2 cut(s)	116, 672
SaqAI	TTAA	4 cut(s)	80, 114, 600, 704
SatI	GCNGC	5 cut(s)	256, 648, 651, 654, 808
Sau3AI	GATC	3 cut(s)	3, 280, 827
Sau96I	GGNCC	2 cut(s)	151, 677
SchI	GAGTC	3 cut(s)	230, 263, 343
ScrFI	CCNGG	4 cut(s)	11, 27, 681, 936
SduI	GDGCHC	2 cut(s)	279, 395
SetI	ASST	5 cut(s)	523, 640, 652, 824, 870
SfaNI	GCATC	2 cut(s)	133, 654
SfcI	CTRYAG	1 cut(s)	253
SfuI	TTCGAA	1 cut(s)	919
SinI	GGWCC	2 cut(s)	151, 677
SmiMI	CAYNNNNRTG	2 cut(s)	116, 672
SmlI	CTYRAG	2 cut(s)	88, 630
SmoI	CTYRAG	2 cut(s)	88, 630
SpeI	ACTAGT	1 cut(s)	812
Sse9I	AATT	2 cut(s)	787, 840
SspMI	CTAG	4 cut(s)	428, 744, 813, 819
StyD4I	CCNGG	4 cut(s)	9, 25, 679, 934
StyI	CCWWGG	1 cut(s)	818
TaaI	ACNGT	2 cut(s)	390, 575
TaiI	ACGT	1 cut(s)	870
TaqI	TCGA	4 cut(s)	249, 761, 914, 919
TasI	AATT	2 cut(s)	787, 840
TfiI	GAWTC	4 cut(s)	199, 337, 419, 916
Tru1I	TTAA	4 cut(s)	80, 114, 600, 704
Tru9I	TTAA	4 cut(s)	80, 114, 600, 704
TscAI	CASTG	1 cut(s)	395
TseFI	GTSAC	1 cut(s)	289
TseI	GCWGC	5 cut(s)	255, 647, 650, 653, 807
Tsp45I	GTSAC	1 cut(s)	289
TspDTI	ATGAA	1 cut(s)	174
TspGWI	ACGGA	1 cut(s)	342
TspRI	CASTG	1 cut(s)	395
Tth111I	GACNNNGTC	1 cut(s)	352
Van91I	CCANNNNNTGG	1 cut(s)	440
VneI	GTGCAC	1 cut(s)	275
VpaK11BI	GGWCC	2 cut(s)	151, 677
VspI	ATTAAT	1 cut(s)	600
XagI	CCTNNNNNAGG	2 cut(s)	633, 822
XmaJI	CCTAGG	1 cut(s)	818
XmiI	GTMKAC	1 cut(s)	774
XmnI	GAANNNNTTC	1 cut(s)	925
XspI	CTAG	4 cut(s)	428, 744, 813, 819
Zsp2I	ATGCAT	1 cut(s)	669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.