Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0008226

Physical Location & Seq

Genomic Coordinates Reverse (-)

38246525 .. 38249017

Gene Structure 2493 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG307800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGCAACAGAGCAATACTTTGAAGATGCCGTGGTCCAGTCTAACTCCATTGGAGACGATAAATGTTCATTTGGAAAATGGGATCCTGTTTCCGAGGTCTCAGAGTCTGAAAACAAGTCCTGTGGTAACTTCGACTGCAGCATATGCTTAGACTCTGTGCACGATCCGGTGGTGACCCTGTGTGGCCATCTATACTGCTGGCCATGCATATACAAGTGGATTCAGTTCCAGACTCCGTCTTCTGCAAGCCAAGAGAACCAAAAACAGCCACAGTGCCCTGTTTGCAAAACTGAAGTCTCCGAATCCTCTCTAGTCCCACTCTATGGTCGTGGTCAAACAACAAAGCAGCCCACGAAGCCATCTAAAGGCAAGGCTCCCAATCTTGGTATAGTCATTCCAAAAAGACCTCTCGCTCCTTGCGGGGTTGACACACCACGAACCCCAAGTACCAGCCCTTACGGTACTCAGCAACTCCATCACCGGATTAATCCTTATCAATCCCAACTGAACAGCACTCAAGGAGGTAGTTATGCAGCTGCTGCTTTACCGATGCATGGTCCTGGTGATACAGCAACACCAGTCTTAAATCCGATGGTCGGCTTGTTTGGTGAAATGGTGTATGCTAGGGTGTTTGGTAACTCGATAACAAATGTCTACACATACCCTAATTCGTATAACCTTGCTGGCAGCGCTAGTCCTAGGGTGAGAAGGCATGTATTGCAGGCTGATAAGTCGCTCAACAGAATGTGTTTTTTTCTGTTTTGTTGCTTTATGTTGTGCCTAATTTTGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009611 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010243 GO:0010498 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031984 GO:0032446 GO:0032527 GO:0032991 GO:0033036 GO:0033554 GO:0034613 GO:0034976 GO:0035966 GO:0035967 GO:0036211 GO:0036503 GO:0036513 GO:0042175 GO:0042221 GO:0042886 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050896 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0051788 GO:0070647 GO:0070727 GO:0070887 GO:0071218 GO:0071310 GO:0071702 GO:0071704 GO:0071705 GO:0071712 GO:0098796 GO:0098827 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

zf-C3HC4 zf-C3HC4_2 zf-RING_UBOX

Protein Analysis

264

Amino Acids

29.02

Weight (kDa)

7.89

Isoelectric Point (pI)

45.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	45 - 96	3.4e-06	Ring finger domain
zf-C3HC4_3	PF13920	45 - 101	8.3e-06	Zinc finger, C3HC4 type (RING finger)
RING_XB3-XBAT31	PF24921	46 - 100	7.5e-10	E3 ubiquitin-protein ligase XB3/XBAT31 RING finger
zf-C3HC4	PF00097	46 - 95	1.2e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	46 - 93	1e-09	RING-type zinc-finger
zf-C3HC4_2	PF13923	46 - 75	4.1e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0008226)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03510 AT4G03510 AT4G03510 AT4G03510
fragaria_vesca	FvH4_6g26170
malus_domestica	MD09G1248700.v1.1 MD17G1241200.v1.1
prunus_persica	Prupe.3G137000_v2.0.a1
pyrus_communis	pycom09g16560 pycom17g24430 pycom17g24440 pycom17g24450
rosa_chinensis	RchiOBHm_Chr2g0126321
rosa_laevigata	RLG00000018901
rosa_multiflora	Rmu_ssc0000264.1_g000040
rosa_roxburghii	Rroxscaffold_2G00117240
rosa_rugosa	Rorug02G0262600 Rorug02G0262700
rosa_samantha	Rh2AG319500 Rh2BG327900 Rh2CG307800 Rh2DG347600
rosa_wichuraiana	Rw2G025890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	323
AccI	GTMKAC	1 cut(s)	654
AciI	CCGC	1 cut(s)	420
AclWI	GGATC	3 cut(s)	77, 90, 158
AcoI	YGGCCR	2 cut(s)	184, 200
AcuI	CTGAAG	1 cut(s)	312
AfaI	GTAC	2 cut(s)	448, 463
AfeI	AGCGCT	1 cut(s)	691
AfiI	CCNNNNNNNGG	5 cut(s)	323, 365, 383, 554, 596
AgsI	TTSAA	1 cut(s)	23
AjnI	CCWGG	1 cut(s)	559
AluBI	AGCT	1 cut(s)	536
AluI	AGCT	1 cut(s)	536
Alw21I	GWGCWC	1 cut(s)	162
Alw26I	GTCTC	3 cut(s)	48, 103, 301
Alw44I	GTGCAC	1 cut(s)	158
AlwI	GGATC	3 cut(s)	77, 90, 158
AlwNI	CAGNNNCTG	2 cut(s)	107, 539
Aor51HI	AGCGCT	1 cut(s)	691
AoxI	GGCC	2 cut(s)	184, 200
ApaLI	GTGCAC	1 cut(s)	158
ApeKI	GCWGC	6 cut(s)	138, 346, 533, 536, 539, 687
ArsI	GACNNNNNNTTYG	2 cut(s)	279, 311
AseI	ATTAAT	1 cut(s)	486
AspA2I	CCTAGG	1 cut(s)	698
AspLEI	GCGC	1 cut(s)	692
AspS9I	GGNCC	2 cut(s)	34, 557
AsuHPI	GGTGA	5 cut(s)	184, 470, 575, 620, 715
AvaII	GGWCC	2 cut(s)	34, 557
AvrII	CCTAGG	1 cut(s)	698
BaeGI	GKGCMC	2 cut(s)	162, 278
BalI	TGGCCA	2 cut(s)	186, 202
BamHI	GGATCC	1 cut(s)	82
BbsI	GAAGAC	1 cut(s)	231
Bbv12I	GWGCWC	1 cut(s)	162
BbvI	GCAGC	6 cut(s)	150, 358, 523, 526, 545, 699
BccI	CCATC	4 cut(s)	195, 367, 483, 586
BceAI	ACGGC	1 cut(s)	14
BciT130I	CCWGG	1 cut(s)	561
BcoDI	GTCTC	3 cut(s)	48, 103, 301
BfaI	CTAG	4 cut(s)	311, 624, 693, 699
BfmI	CTRYAG	1 cut(s)	136
BfoI	RGCGCY	1 cut(s)	693
BisI	GCNGC	6 cut(s)	139, 347, 534, 537, 540, 688
BlnI	CCTAGG	1 cut(s)	698
BlsI	GCNGC	6 cut(s)	140, 348, 535, 538, 541, 689
Bme1390I	CCNGG	1 cut(s)	561
Bme18I	GGWCC	2 cut(s)	34, 557
BmgT120I	GGNCC	2 cut(s)	34, 557
BmiI	GGNNCC	2 cut(s)	84, 375
BmrFI	CCNGG	1 cut(s)	561
BmsI	GCATC	2 cut(s)	16, 540
BpiI	GAAGAC	1 cut(s)	231
BpuEI	CTTGAG	1 cut(s)	501
BsaI	GGTCTC	1 cut(s)	103
BsaJI	CCNNGG	3 cut(s)	30, 93, 698
BsaWI	WCCGGW	2 cut(s)	166, 480
Bsc4I	CCNNNNNNNGG	5 cut(s)	323, 365, 383, 554, 596
Bse1I	ACTGG	2 cut(s)	37, 578
BseBI	CCWGG	1 cut(s)	561
BseDI	CCNNGG	3 cut(s)	30, 93, 698
BseLI	CCNNNNNNNGG	5 cut(s)	323, 365, 383, 554, 596
BseMII	CTCAG	2 cut(s)	114, 479
BseNI	ACTGG	2 cut(s)	37, 578
BseSI	GKGCMC	2 cut(s)	162, 278
BseXI	GCAGC	6 cut(s)	150, 358, 523, 526, 545, 699
BshFI	GGCC	2 cut(s)	186, 202
BsiHKAI	GWGCWC	1 cut(s)	162
BsiSI	CCGG	2 cut(s)	167, 481
BslFI	GGGAC	1 cut(s)	299
BslI	CCNNNNNNNGG	5 cut(s)	323, 365, 383, 554, 596
BsmAI	GTCTC	3 cut(s)	48, 103, 301
BsmBI	CGTCTC	1 cut(s)	48
BsmFI	GGGAC	1 cut(s)	299
BsnI	GGCC	2 cut(s)	186, 202
Bso31I	GGTCTC	1 cut(s)	103
Bsp1286I	GDGCHC	2 cut(s)	162, 278
Bsp143I	GATC	2 cut(s)	82, 163
BspACI	CCGC	1 cut(s)	420
BspANI	GGCC	2 cut(s)	186, 202
BspCNI	CTCAG	2 cut(s)	113, 478
BspLI	GGNNCC	2 cut(s)	84, 375
BspMAI	CTGCAG	1 cut(s)	140
BspPI	GGATC	3 cut(s)	77, 90, 158
BspTNI	GGTCTC	1 cut(s)	103
BsrI	ACTGG	2 cut(s)	37, 578
BssECI	CCNNGG	3 cut(s)	30, 93, 698
BssMI	GATC	2 cut(s)	82, 163
BssT1I	CCWWGG	1 cut(s)	698
Bst2UI	CCWGG	1 cut(s)	561
Bst4CI	ACNGT	2 cut(s)	273, 461
BstAPI	GCANNNNNTGC	3 cut(s)	144, 539, 718
BstC8I	GCNNGC	4 cut(s)	200, 247, 685, 723
BstDEI	CTNAG	3 cut(s)	100, 148, 465
BstDSI	CCRYGG	1 cut(s)	30
BstEII	GGTNACC	1 cut(s)	172
BstH2I	RGCGCY	1 cut(s)	693
BstHHI	GCGC	1 cut(s)	692
BstKTI	GATC	2 cut(s)	85, 166
BstMAI	GTCTC	3 cut(s)	48, 103, 301
BstMBI	GATC	2 cut(s)	82, 163
BstMWI	GCNNNNNNNGC	7 cut(s)	144, 204, 282, 355, 539, 689, 718
BstNI	CCWGG	1 cut(s)	561
BstNSI	RCATGY	1 cut(s)	716
BstPI	GGTNACC	1 cut(s)	172
BstSCI	CCNGG	1 cut(s)	559
BstSFI	CTRYAG	1 cut(s)	136
BstSLI	GKGCMC	2 cut(s)	162, 278
BstV1I	GCAGC	6 cut(s)	150, 358, 523, 526, 545, 699
BstV2I	GAAGAC	1 cut(s)	231
BstX2I	RGATCY	1 cut(s)	82
BstYI	RGATCY	1 cut(s)	82
BsuRI	GGCC	2 cut(s)	186, 202
BtgI	CCRYGG	1 cut(s)	30
BtsIMutI	CAGTG	1 cut(s)	278
Cac8I	GCNNGC	4 cut(s)	200, 247, 685, 723
CaiI	CAGNNNCTG	2 cut(s)	107, 539
CfoI	GCGC	1 cut(s)	692
Cfr13I	GGNCC	2 cut(s)	34, 557
Csp6I	GTAC	2 cut(s)	447, 462
CspCI	CAANNNNNGTGG	2 cut(s)	103, 138
CviAII	CATG	3 cut(s)	204, 554, 713
CviQI	GTAC	2 cut(s)	447, 462
DdeI	CTNAG	3 cut(s)	100, 148, 465
DpnI	GATC	2 cut(s)	84, 165
DpnII	GATC	2 cut(s)	82, 163
EaeI	YGGCCR	2 cut(s)	184, 200
Eco130I	CCWWGG	1 cut(s)	698
Eco31I	GGTCTC	1 cut(s)	103
Eco47I	GGWCC	2 cut(s)	34, 557
Eco47III	AGCGCT	1 cut(s)	691
Eco57I	CTGAAG	1 cut(s)	312
Eco91I	GGTNACC	1 cut(s)	172
EcoO65I	GGTNACC	1 cut(s)	172
EcoRII	CCWGG	1 cut(s)	559
EcoT14I	CCWWGG	1 cut(s)	698
EcoT22I	ATGCAT	2 cut(s)	209, 555
ErhI	CCWWGG	1 cut(s)	698
Esp3I	CGTCTC	1 cut(s)	48
FaeI	CATG	3 cut(s)	207, 557, 716
FaqI	GGGAC	1 cut(s)	299
FatI	CATG	3 cut(s)	203, 553, 712
FauI	CCCGC	1 cut(s)	413
FauNDI	CATATG	1 cut(s)	143
FblI	GTMKAC	1 cut(s)	654
Fnu4HI	GCNGC	6 cut(s)	139, 347, 534, 537, 540, 688
Fsp4HI	GCNGC	6 cut(s)	139, 347, 534, 537, 540, 688
FspBI	CTAG	4 cut(s)	311, 624, 693, 699
GlaI	GCGC	1 cut(s)	691
GluI	GCNGC	6 cut(s)	139, 347, 534, 537, 540, 688
HaeII	RGCGCY	1 cut(s)	693
HaeIII	GGCC	2 cut(s)	186, 202
HapII	CCGG	2 cut(s)	167, 481
HhaI	GCGC	1 cut(s)	692
Hin1II	CATG	3 cut(s)	207, 557, 716
Hin6I	GCGC	1 cut(s)	690
HinP1I	GCGC	1 cut(s)	690
HincII	GTYRAC	1 cut(s)	427
HindII	GTYRAC	1 cut(s)	427
HinfI	GANTC	5 cut(s)	104, 152, 220, 232, 302
HpaII	CCGG	2 cut(s)	167, 481
HphI	GGTGA	5 cut(s)	184, 470, 575, 620, 715
Hpy166II	GTNNAC	3 cut(s)	160, 427, 655
Hpy188I	TCNGA	5 cut(s)	94, 103, 109, 301, 591
Hpy188III	TCNNGA	1 cut(s)	229
Hpy8I	GTNNAC	3 cut(s)	160, 427, 655
HpyAV	CCTTC	1 cut(s)	702
HpyCH4III	ACNGT	2 cut(s)	273, 461
HpyCH4V	TGCA	8 cut(s)	138, 160, 207, 245, 285, 533, 553, 721
HpyF10VI	GCNNNNNNNGC	7 cut(s)	144, 204, 282, 355, 539, 689, 718
HpyF3I	CTNAG	3 cut(s)	100, 148, 465
Hsp92II	CATG	3 cut(s)	207, 557, 716
HspAI	GCGC	1 cut(s)	690
Kzo9I	GATC	2 cut(s)	82, 163
LmnI	GCTCC	2 cut(s)	379, 418
Lsp1109I	GCAGC	6 cut(s)	150, 358, 523, 526, 545, 699
LweI	GCATC	2 cut(s)	16, 540
MaeI	CTAG	4 cut(s)	311, 624, 693, 699
MaeIII	GTNAC	3 cut(s)	125, 172, 635
MalI	GATC	2 cut(s)	84, 165
MboI	GATC	2 cut(s)	82, 163
MboII	GAAGA	2 cut(s)	35, 231
MflI	RGATCY	1 cut(s)	82
MhlI	GDGCHC	2 cut(s)	162, 278
MlsI	TGGCCA	2 cut(s)	186, 202
MluCI	AATT	2 cut(s)	667, 783
MluNI	TGGCCA	2 cut(s)	186, 202
MlyI	GAGTC	3 cut(s)	113, 146, 226
MnlI	CCTC	4 cut(s)	88, 316, 417, 515
Mox20I	TGGCCA	2 cut(s)	186, 202
Mph1103I	ATGCAT	2 cut(s)	209, 555
MscI	TGGCCA	2 cut(s)	186, 202
MseI	TTAA	2 cut(s)	486, 584
Msp20I	TGGCCA	2 cut(s)	186, 202
MspA1I	CMGCKG	1 cut(s)	536
MspI	CCGG	2 cut(s)	167, 481
MspR9I	CCNGG	1 cut(s)	561
MvaI	CCWGG	1 cut(s)	561
MwoI	GCNNNNNNNGC	7 cut(s)	144, 204, 282, 355, 539, 689, 718
NdeI	CATATG	1 cut(s)	143
NdeII	GATC	2 cut(s)	82, 163
NlaIII	CATG	3 cut(s)	207, 557, 716
NlaIV	GGNNCC	2 cut(s)	84, 375
NmuCI	GTSAC	1 cut(s)	172
NsiI	ATGCAT	2 cut(s)	209, 555
NspI	RCATGY	1 cut(s)	716
PfeI	GAWTC	2 cut(s)	220, 302
PflFI	GACNNNGTC	1 cut(s)	235
PflMI	CCANNNNNTGG	1 cut(s)	323
PkrI	GCNGC	6 cut(s)	140, 348, 535, 538, 541, 689
PleI	GAGTC	3 cut(s)	112, 146, 226
PpsI	GAGTC	3 cut(s)	112, 146, 226
PshBI	ATTAAT	1 cut(s)	486
Psp6I	CCWGG	1 cut(s)	559
PspEI	GGTNACC	1 cut(s)	172
PspGI	CCWGG	1 cut(s)	559
PspN4I	GGNNCC	2 cut(s)	84, 375
PspPI	GGNCC	2 cut(s)	34, 557
PsrI	GAACNNNNNNTAC	2 cut(s)	430, 462
PstI	CTGCAG	1 cut(s)	140
PstNI	CAGNNNCTG	2 cut(s)	107, 539
PsuI	RGATCY	1 cut(s)	82
PsyI	GACNNNGTC	1 cut(s)	235
PvuII	CAGCTG	1 cut(s)	536
RsaI	GTAC	2 cut(s)	448, 463
RsaNI	GTAC	2 cut(s)	447, 462
SaqAI	TTAA	2 cut(s)	486, 584
SatI	GCNGC	6 cut(s)	139, 347, 534, 537, 540, 688
Sau3AI	GATC	2 cut(s)	82, 163
Sau96I	GGNCC	2 cut(s)	34, 557
SchI	GAGTC	3 cut(s)	113, 146, 226
ScrFI	CCNGG	1 cut(s)	561
SduI	GDGCHC	2 cut(s)	162, 278
SetI	ASST	5 cut(s)	99, 409, 526, 538, 681
SfaNI	GCATC	2 cut(s)	16, 540
SfcI	CTRYAG	1 cut(s)	136
SinI	GGWCC	2 cut(s)	34, 557
SmlI	CTYRAG	1 cut(s)	516
SmoI	CTYRAG	1 cut(s)	516
Sse9I	AATT	2 cut(s)	667, 783
SsiI	CCGC	1 cut(s)	420
SspMI	CTAG	4 cut(s)	311, 624, 693, 699
StyD4I	CCNGG	1 cut(s)	559
StyI	CCWWGG	1 cut(s)	698
TaaI	ACNGT	2 cut(s)	273, 461
TaqI	TCGA	2 cut(s)	132, 641
TasI	AATT	2 cut(s)	667, 783
TfiI	GAWTC	2 cut(s)	220, 302
Tru1I	TTAA	2 cut(s)	486, 584
Tru9I	TTAA	2 cut(s)	486, 584
TscAI	CASTG	1 cut(s)	278
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	6 cut(s)	138, 346, 533, 536, 539, 687
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	1 cut(s)	57
TspGWI	ACGGA	1 cut(s)	225
TspRI	CASTG	1 cut(s)	278
Tth111I	GACNNNGTC	1 cut(s)	235
Van91I	CCANNNNNTGG	1 cut(s)	323
VneI	GTGCAC	1 cut(s)	158
VpaK11BI	GGWCC	2 cut(s)	34, 557
VspI	ATTAAT	1 cut(s)	486
XceI	RCATGY	1 cut(s)	716
XmaJI	CCTAGG	1 cut(s)	698
XmiI	GTMKAC	1 cut(s)	654
XspI	CTAG	4 cut(s)	311, 624, 693, 699
Zsp2I	ATGCAT	2 cut(s)	209, 555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.