Rh2BG327900

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Reverse (-)
42529799 .. 42532183
2385 bp
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UTR
Exon/CDS
Intron
Rh2BG327900.1

Sequence Viewer

Length: 1068 bp
ATGGCTCCTCATGGATTTATCATTTCTATGAAATTTAATAACAAATCTATTCTCCCGAGACGTGATATGTTTTGTCTCTCTATATATATTGCAACCCCATTGCCTCTTTCCTATCATCCTTTCCATTCTCCGTTCTTCGTTCTTCTCAAGCCTCTCGTTCTCTGTGTTCCGCCGTTGAAGCTTCAAAGCTCTTATTACGCCTTCACAAACAAAACCCACTTCTCTACTCTTGCTGATTTAAGCAACTCAAGAATACATCTACCCCAATCCATTAAGATGGCAACAGAGCAATACTTTGAAGATGCGGTGGTCCAGTCCAACTCCATTGGAGACGATAAATGTTCATTTGGAAAATGGAATCCTGTTTCCGAGGTCTCAGAGTCTGAAAACAAGTCCTGTGGTAACTTTGACTGCAGCATATGCTTAGACTCTGTGCACGATCCGGTGGTGACCCTGTGTGGCCATCTATACTGCTGGCCATGCATATACAAGTGGATTCAGTTCCAGACTCCGTCTTCTGAAAGCCAAGAGAACCAAAAACAGCCACAGTGCCCTGTTTGCAAAACTGAAGTCTCCGAATCCTCTCTAGTCCCACTCTATGGTCGTGGTCAAACAACAAAGCCCACGAAGCCATCTAAAGGCAAGGCTCCCAATATTGGTATAGTCATTCCAAAAAGACCTCTCGCTCCTTGCGGGGTTGACACACCACGAACCCCAAGTACCAGCCCTTACGGAACTCAGCAACTCCATCACCGGATTAATCCTTATCAATCCCAACTGAGCAGCACTCAAGGAGGTAGTTATGCAGCTGCTGCTTTACCGATGCATGGTCCTGGTGATACAGCAACACAAGTCTTAAATCCGACGGTCGGCTTGTTTGGTGAAATGGTGTATGCTAGGGTGTTTGGTAACTCGATAACAAATGTCTACACATACCCTAATTCGTATAACCTTGCTGGCAGCGCTAGTCCTAGGGTGAGAAGGCATGTATTGCAGGCTGATAAGTCGCTCAACAGAATGTGTTTTTTTCTGTTTTGTTGCTTTATGTTGTGCCTAATTTTGTTTTGA

Protein Analysis

355

Amino Acids

39.46

Weight (kDa)

8.79

Isoelectric Point (pI)

51.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 137 - 188 5e-06 Ring finger domain
RING_XB3-XBAT31 PF24921 138 - 192 1.4e-09 E3 ubiquitin-protein ligase XB3/XBAT31 RING finger
zf-C3HC4 PF00097 138 - 187 2.3e-09 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 138 - 185 1.1e-09 RING-type zinc-finger
zf-C3HC4_2 PF13923 138 - 167 6.2e-07 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 599
AccI GTMKAC 1 cut(s) 927
AciI CCGC 3 cut(s) 170, 305, 693
AclWI GGATC 1 cut(s) 434
AcoI YGGCCR 2 cut(s) 460, 476
AcsI RAATTY 1 cut(s) 32
AcuI CTGAAG 1 cut(s) 588
AfaI GTAC 1 cut(s) 721
AfeI AGCGCT 1 cut(s) 964
AfiI CCNNNNNNNGG 5 cut(s) 599, 638, 656, 827, 869
AgsI TTSAA 3 cut(s) 178, 185, 299
AjiI CACGTC 1 cut(s) 62
AjnI CCWGG 1 cut(s) 832
AluBI AGCT 3 cut(s) 181, 189, 809
AluI AGCT 3 cut(s) 181, 189, 809
Alw21I GWGCWC 1 cut(s) 438
Alw26I GTCTC 5 cut(s) 52, 80, 324, 379, 577
Alw44I GTGCAC 1 cut(s) 434
AlwI GGATC 1 cut(s) 434
AlwNI CAGNNNCTG 2 cut(s) 383, 812
Ama87I CYCGRG 1 cut(s) 55
Aor51HI AGCGCT 1 cut(s) 964
AoxI GGCC 2 cut(s) 460, 476
ApaLI GTGCAC 1 cut(s) 434
ApeKI GCWGC 6 cut(s) 414, 783, 806, 809, 812, 960
ApoI RAATTY 1 cut(s) 32
ArsI GACNNNNNNTTYG 2 cut(s) 555, 587
AseI ATTAAT 1 cut(s) 759
AspA2I CCTAGG 1 cut(s) 971
AspLEI GCGC 1 cut(s) 965
AspS9I GGNCC 2 cut(s) 310, 830
AsuHPI GGTGA 5 cut(s) 460, 743, 848, 893, 988
AvaI CYCGRG 1 cut(s) 55
AvaII GGWCC 2 cut(s) 310, 830
AvrII CCTAGG 1 cut(s) 971
BaeGI GKGCMC 2 cut(s) 438, 554
BalI TGGCCA 2 cut(s) 462, 478
BbsI GAAGAC 1 cut(s) 507
Bbv12I GWGCWC 1 cut(s) 438
BbvI GCAGC 6 cut(s) 426, 795, 796, 799, 818, 972
BccI CCATC 4 cut(s) 271, 471, 640, 756
BceAI ACGGC 1 cut(s) 157
BciT130I CCWGG 1 cut(s) 834
BcoDI GTCTC 5 cut(s) 52, 80, 324, 379, 577
BfaI CTAG 4 cut(s) 587, 897, 966, 972
BfmI CTRYAG 1 cut(s) 412
BfoI RGCGCY 1 cut(s) 966
BisI GCNGC 6 cut(s) 415, 784, 807, 810, 813, 961
BlnI CCTAGG 1 cut(s) 971
BlsI GCNGC 6 cut(s) 416, 785, 808, 811, 814, 962
Bme1390I CCNGG 1 cut(s) 834
Bme18I GGWCC 2 cut(s) 310, 830
BmeT110I CYCGRG 1 cut(s) 55
BmgBI CACGTC 1 cut(s) 62
BmgT120I GGNCC 2 cut(s) 310, 830
BmiI GGNNCC 2 cut(s) 6, 648
BmrFI CCNGG 1 cut(s) 834
BmsI GCATC 2 cut(s) 292, 813
BpiI GAAGAC 1 cut(s) 507
BplI GAGNNNNNCTC 2 cut(s) 772, 804
BpuEI CTTGAG 3 cut(s) 131, 232, 774
BsaI GGTCTC 1 cut(s) 379
BsaJI CCNNGG 2 cut(s) 369, 971
BsaWI WCCGGW 2 cut(s) 442, 753
Bsc4I CCNNNNNNNGG 5 cut(s) 599, 638, 656, 827, 869
Bse1I ACTGG 1 cut(s) 313
Bse3DI GCAATG 1 cut(s) 98
BseBI CCWGG 1 cut(s) 834
BseDI CCNNGG 2 cut(s) 369, 971
BseGI GGATG 1 cut(s) 115
BseLI CCNNNNNNNGG 5 cut(s) 599, 638, 656, 827, 869
BseMI GCAATG 1 cut(s) 98
BseMII CTCAG 3 cut(s) 390, 752, 770
BseNI ACTGG 1 cut(s) 313
BseSI GKGCMC 2 cut(s) 438, 554
BseXI GCAGC 6 cut(s) 426, 795, 796, 799, 818, 972
Bsh1285I CGRYCG 1 cut(s) 870
BshFI GGCC 2 cut(s) 462, 478
BsiEI CGRYCG 1 cut(s) 870
BsiHKAI GWGCWC 1 cut(s) 438
BsiHKCI CYCGRG 1 cut(s) 55
BsiSI CCGG 2 cut(s) 443, 754
BslFI GGGAC 1 cut(s) 575
BslI CCNNNNNNNGG 5 cut(s) 599, 638, 656, 827, 869
BsmAI GTCTC 5 cut(s) 52, 80, 324, 379, 577
BsmBI CGTCTC 2 cut(s) 52, 324
BsmFI GGGAC 1 cut(s) 575
BsnI GGCC 2 cut(s) 462, 478
Bso31I GGTCTC 1 cut(s) 379
BsoBI CYCGRG 1 cut(s) 55
Bsp1286I GDGCHC 2 cut(s) 438, 554
Bsp143I GATC 1 cut(s) 439
BspACI CCGC 3 cut(s) 170, 305, 693
BspANI GGCC 2 cut(s) 462, 478
BspCNI CTCAG 3 cut(s) 389, 751, 771
BspLI GGNNCC 2 cut(s) 6, 648
BspMAI CTGCAG 1 cut(s) 416
BspPI GGATC 1 cut(s) 434
BspTNI GGTCTC 1 cut(s) 379
BsrDI GCAATG 1 cut(s) 98
BsrI ACTGG 1 cut(s) 313
BssECI CCNNGG 2 cut(s) 369, 971
BssMI GATC 1 cut(s) 439
BssT1I CCWWGG 1 cut(s) 971
Bst2UI CCWGG 1 cut(s) 834
Bst4CI ACNGT 2 cut(s) 549, 868
BstAPI GCANNNNNTGC 3 cut(s) 420, 812, 991
BstC8I GCNNGC 3 cut(s) 476, 958, 996
BstDEI CTNAG 4 cut(s) 376, 424, 738, 779
BstEII GGTNACC 1 cut(s) 448
BstF5I GGATG 1 cut(s) 115
BstH2I RGCGCY 1 cut(s) 966
BstHHI GCGC 1 cut(s) 965
BstKTI GATC 1 cut(s) 442
BstMAI GTCTC 5 cut(s) 52, 80, 324, 379, 577
BstMBI GATC 1 cut(s) 439
BstMCI CGRYCG 1 cut(s) 870
BstMWI GCNNNNNNNGC 8 cut(s) 178, 420, 480, 558, 628, 812, 962, 991
BstNI CCWGG 1 cut(s) 834
BstNSI RCATGY 1 cut(s) 989
BstPI GGTNACC 1 cut(s) 448
BstSCI CCNGG 1 cut(s) 832
BstSFI CTRYAG 1 cut(s) 412
BstSLI GKGCMC 2 cut(s) 438, 554
BstV1I GCAGC 6 cut(s) 426, 795, 796, 799, 818, 972
BstV2I GAAGAC 1 cut(s) 507
BstXI CCANNNNNNTGG 1 cut(s) 277
BsuRI GGCC 2 cut(s) 462, 478
BtrI CACGTC 1 cut(s) 62
BtsCI GGATG 1 cut(s) 115
BtsIMutI CAGTG 1 cut(s) 554
Cac8I GCNNGC 3 cut(s) 476, 958, 996
CaiI CAGNNNCTG 2 cut(s) 383, 812
CfoI GCGC 1 cut(s) 965
Cfr13I GGNCC 2 cut(s) 310, 830
Csp6I GTAC 1 cut(s) 720
CspCI CAANNNNNGTGG 2 cut(s) 379, 414
CviAII CATG 4 cut(s) 11, 480, 827, 986
CviQI GTAC 1 cut(s) 720
DdeI CTNAG 4 cut(s) 376, 424, 738, 779
DpnI GATC 1 cut(s) 441
DpnII GATC 1 cut(s) 439
EaeI YGGCCR 2 cut(s) 460, 476
EciI GGCGGA 1 cut(s) 159
Eco130I CCWWGG 1 cut(s) 971
Eco31I GGTCTC 1 cut(s) 379
Eco47I GGWCC 2 cut(s) 310, 830
Eco47III AGCGCT 1 cut(s) 964
Eco57I CTGAAG 1 cut(s) 588
Eco88I CYCGRG 1 cut(s) 55
Eco91I GGTNACC 1 cut(s) 448
EcoO65I GGTNACC 1 cut(s) 448
EcoRII CCWGG 1 cut(s) 832
EcoT14I CCWWGG 1 cut(s) 971
EcoT22I ATGCAT 2 cut(s) 485, 828
ErhI CCWWGG 1 cut(s) 971
Esp3I CGTCTC 2 cut(s) 52, 324
FaeI CATG 4 cut(s) 14, 483, 830, 989
FaqI GGGAC 1 cut(s) 575
FatI CATG 4 cut(s) 10, 479, 826, 985
FauI CCCGC 1 cut(s) 686
FauNDI CATATG 1 cut(s) 419
FblI GTMKAC 1 cut(s) 927
Fnu4HI GCNGC 6 cut(s) 415, 784, 807, 810, 813, 961
FokI GGATG 1 cut(s) 102
Fsp4HI GCNGC 6 cut(s) 415, 784, 807, 810, 813, 961
FspBI CTAG 4 cut(s) 587, 897, 966, 972
GlaI GCGC 1 cut(s) 964
GluI GCNGC 6 cut(s) 415, 784, 807, 810, 813, 961
HaeII RGCGCY 1 cut(s) 966
HaeIII GGCC 2 cut(s) 462, 478
HapII CCGG 2 cut(s) 443, 754
HhaI GCGC 1 cut(s) 965
Hin1II CATG 4 cut(s) 14, 483, 830, 989
Hin6I GCGC 1 cut(s) 963
HinP1I GCGC 1 cut(s) 963
HincII GTYRAC 1 cut(s) 700
HindII GTYRAC 1 cut(s) 700
HindIII AAGCTT 1 cut(s) 179
HinfI GANTC 6 cut(s) 358, 380, 428, 496, 508, 578
HpaII CCGG 2 cut(s) 443, 754
HphI GGTGA 5 cut(s) 460, 743, 848, 893, 988
Hpy166II GTNNAC 3 cut(s) 436, 700, 928
Hpy188I TCNGA 6 cut(s) 370, 379, 385, 520, 577, 864
Hpy188III TCNNGA 3 cut(s) 55, 249, 505
Hpy8I GTNNAC 3 cut(s) 436, 700, 928
Hpy99I CGWCG 1 cut(s) 868
HpyAV CCTTC 2 cut(s) 211, 975
HpyCH4III ACNGT 2 cut(s) 549, 868
HpyCH4IV ACGT 1 cut(s) 61
HpyCH4V TGCA 8 cut(s) 92, 414, 436, 483, 561, 806, 826, 994
HpyF10VI GCNNNNNNNGC 8 cut(s) 178, 420, 480, 558, 628, 812, 962, 991
HpyF3I CTNAG 4 cut(s) 376, 424, 738, 779
HpySE526I ACGT 1 cut(s) 61
Hsp92II CATG 4 cut(s) 14, 483, 830, 989
HspAI GCGC 1 cut(s) 963
Kzo9I GATC 1 cut(s) 439
LmnI GCTCC 3 cut(s) 10, 652, 691
Lsp1109I GCAGC 6 cut(s) 426, 795, 796, 799, 818, 972
LweI GCATC 2 cut(s) 292, 813
MaeI CTAG 4 cut(s) 587, 897, 966, 972
MaeII ACGT 1 cut(s) 61
MaeIII GTNAC 3 cut(s) 401, 448, 908
MalI GATC 1 cut(s) 441
MboI GATC 1 cut(s) 439
MboII GAAGA 4 cut(s) 127, 134, 311, 507
MhlI GDGCHC 2 cut(s) 438, 554
MlsI TGGCCA 2 cut(s) 462, 478
MluCI AATT 3 cut(s) 32, 940, 1056
MluNI TGGCCA 2 cut(s) 462, 478
MlyI GAGTC 3 cut(s) 389, 422, 502
MmeI TCCRAC 2 cut(s) 342, 887
MnlI CCTC 7 cut(s) 18, 114, 162, 364, 592, 690, 788
Mox20I TGGCCA 2 cut(s) 462, 478
Mph1103I ATGCAT 2 cut(s) 485, 828
MscI TGGCCA 2 cut(s) 462, 478
MseI TTAA 5 cut(s) 36, 239, 273, 759, 857
MslI CAYNNNNRTG 2 cut(s) 26, 275
Msp20I TGGCCA 2 cut(s) 462, 478
MspA1I CMGCKG 1 cut(s) 809
MspI CCGG 2 cut(s) 443, 754
MspR9I CCNGG 1 cut(s) 834
MvaI CCWGG 1 cut(s) 834
MwoI GCNNNNNNNGC 8 cut(s) 178, 420, 480, 558, 628, 812, 962, 991
NdeI CATATG 1 cut(s) 419
NdeII GATC 1 cut(s) 439
NlaIII CATG 4 cut(s) 14, 483, 830, 989
NlaIV GGNNCC 2 cut(s) 6, 648
NmuCI GTSAC 1 cut(s) 448
NsiI ATGCAT 2 cut(s) 485, 828
NspI RCATGY 1 cut(s) 989
PfeI GAWTC 3 cut(s) 358, 496, 578
PflFI GACNNNGTC 1 cut(s) 511
PflMI CCANNNNNTGG 1 cut(s) 599
PkrI GCNGC 6 cut(s) 416, 785, 808, 811, 814, 962
PleI GAGTC 3 cut(s) 388, 422, 502
PpsI GAGTC 3 cut(s) 388, 422, 502
PshBI ATTAAT 1 cut(s) 759
Psp6I CCWGG 1 cut(s) 832
PspEI GGTNACC 1 cut(s) 448
PspGI CCWGG 1 cut(s) 832
PspN4I GGNNCC 2 cut(s) 6, 648
PspPI GGNCC 2 cut(s) 310, 830
PsrI GAACNNNNNNTAC 2 cut(s) 703, 735
PstI CTGCAG 1 cut(s) 416
PstNI CAGNNNCTG 2 cut(s) 383, 812
PsyI GACNNNGTC 1 cut(s) 511
PvuII CAGCTG 1 cut(s) 809
RsaI GTAC 1 cut(s) 721
RsaNI GTAC 1 cut(s) 720
RseI CAYNNNNRTG 2 cut(s) 26, 275
SaqAI TTAA 5 cut(s) 36, 239, 273, 759, 857
SatI GCNGC 6 cut(s) 415, 784, 807, 810, 813, 961
Sau3AI GATC 1 cut(s) 439
Sau96I GGNCC 2 cut(s) 310, 830
SchI GAGTC 3 cut(s) 389, 422, 502
ScrFI CCNGG 1 cut(s) 834
SduI GDGCHC 2 cut(s) 438, 554
SetI ASST 8 cut(s) 64, 183, 191, 375, 682, 799, 811, 954
SfaNI GCATC 2 cut(s) 292, 813
SfcI CTRYAG 1 cut(s) 412
SinI GGWCC 2 cut(s) 310, 830
SmiMI CAYNNNNRTG 2 cut(s) 26, 275
SmlI CTYRAG 3 cut(s) 146, 247, 789
SmoI CTYRAG 3 cut(s) 146, 247, 789
Sse9I AATT 3 cut(s) 32, 940, 1056
SsiI CCGC 3 cut(s) 170, 305, 693
SspI AATATT 1 cut(s) 655
SspMI CTAG 4 cut(s) 587, 897, 966, 972
StyD4I CCNGG 1 cut(s) 832
StyI CCWWGG 1 cut(s) 971
TaaI ACNGT 2 cut(s) 549, 868
TaiI ACGT 1 cut(s) 64
TaqI TCGA 1 cut(s) 914
TasI AATT 3 cut(s) 32, 940, 1056
TfiI GAWTC 3 cut(s) 358, 496, 578
Tru1I TTAA 5 cut(s) 36, 239, 273, 759, 857
Tru9I TTAA 5 cut(s) 36, 239, 273, 759, 857
TscAI CASTG 1 cut(s) 554
TseFI GTSAC 1 cut(s) 448
TseI GCWGC 6 cut(s) 414, 783, 806, 809, 812, 960
Tsp45I GTSAC 1 cut(s) 448
TspDTI ATGAA 2 cut(s) 44, 333
TspGWI ACGGA 3 cut(s) 120, 501, 747
TspRI CASTG 1 cut(s) 554
Tth111I GACNNNGTC 1 cut(s) 511
Van91I CCANNNNNTGG 1 cut(s) 599
VneI GTGCAC 1 cut(s) 434
VpaK11BI GGWCC 2 cut(s) 310, 830
VspI ATTAAT 1 cut(s) 759
XapI RAATTY 1 cut(s) 32
XceI RCATGY 1 cut(s) 989
XmaJI CCTAGG 1 cut(s) 971
XmiI GTMKAC 1 cut(s) 927
XspI CTAG 4 cut(s) 587, 897, 966, 972
Zsp2I ATGCAT 2 cut(s) 485, 828
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.