Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008226

Physical Location & Seq

Genomic Coordinates Reverse (-)

40630093 .. 40632051

Gene Structure 1959 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ49832

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGTTTTGTCTCTCTATATATATTGCAACCCCATTGCCTCTTTCCTATCATCCTTTCCATTCTCCGTTCTTCGTTCTTCTCAAGCCTCTCGTTCTCTGTGTTCCGCCGTTGAAGCTTCAAAGCTCTTATTACGCCTTCACAAACAAAACCCACTTCTCTACTCTTGCTGATTTAAGCAACTCAAGAATACATCTACCCCAATCCATTAAGATGGCAACAGAGCAATACTTTGAAGATGCGGTGGTCCAGTCCAACTCCATTGGAGACGATAAATGTTCATTTGGAAAATGGAATCCTGTTTCCGAGGTCTCAGAGTCTGAAAACAAGTCCTGTGGTAACTTTGACTGCAGCATATGCTTAGACTCTGTGCACGATCCGGTGGTGACCCTGTGTGGCCATCTATACTGCTGGCCATGCATATACAAGTGGATTCAGTTCCAGACTCCGTCTTCTGAAAGCCAAGAGAACCAAAAACAGCCACAGTGCCCTGTTTGCAAAACTGAAGTCTCCGAATCCTCTCTAGTCCCACTCTATGGTCGTGGTCAAACAACAAAGCCCACGAAGCCATCTAAAGGCAAGGCTCCCAATATTGGTATAGTCATTCCAAAAAGACCTCTCGCTCCTTGCGGGGTTGACACACCACGAACCCCAAGTACCAGCCCTTACGGAACTCAGCAACTCCATCACCGGATTAATCCTTATCAATCCCAACTGAGCAGCACTCAAGGAGGTAGTTATGCAGCTGCTGCTTTACCGATGCATGGTCCTGGTGATACAGCAACACAAGTCTTAAATCCGACGGTCGGCTTGTTTGGTGAAATGGTGTATGCTAGGGTGTTTGGTAACTCGATAACAAATGTCTACACATACCCTAATTCGTATAACCTTGCTGGCAGCGCTAGTCCTAGGGTGAGAAGGCATGTATTGCAGGCTGATAAGTCGCTCAACAGAATGTGTTTTTTTCTGTTTTGTTGCTTTATGTTGTGCCTAATTTTGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009611 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010243 GO:0010498 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031984 GO:0032446 GO:0032527 GO:0032991 GO:0033036 GO:0033554 GO:0034613 GO:0034976 GO:0035966 GO:0035967 GO:0036211 GO:0036503 GO:0036513 GO:0042175 GO:0042221 GO:0042886 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050896 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0051788 GO:0070647 GO:0070727 GO:0070887 GO:0071218 GO:0071310 GO:0071702 GO:0071704 GO:0071705 GO:0071712 GO:0098796 GO:0098827 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

zf-C3HC4 zf-C3HC4_2 zf-RING_UBOX

Protein Analysis

333

Amino Acids

36.9

Weight (kDa)

8.53

Isoelectric Point (pI)

50.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	115 - 166	4.4e-06	Ring finger domain
RING_XB3-XBAT31	PF24921	116 - 170	1.3e-09	E3 ubiquitin-protein ligase XB3/XBAT31 RING finger
zf-C3HC4	PF00097	116 - 165	2.1e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	116 - 163	1e-09	RING-type zinc-finger
zf-C3HC4_2	PF13923	116 - 145	5.7e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008226)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03510 AT4G03510 AT4G03510 AT4G03510
fragaria_vesca	FvH4_6g26170
malus_domestica	MD09G1248700.v1.1 MD17G1241200.v1.1
prunus_persica	Prupe.3G137000_v2.0.a1
pyrus_communis	pycom09g16560 pycom17g24430 pycom17g24440 pycom17g24450
rosa_chinensis	RchiOBHm_Chr2g0126321
rosa_laevigata	RLG00000018901
rosa_multiflora	Rmu_ssc0000264.1_g000040
rosa_roxburghii	Rroxscaffold_2G00117240
rosa_rugosa	Rorug02G0262600 Rorug02G0262700
rosa_samantha	Rh2AG319500 Rh2BG327900 Rh2CG307800 Rh2DG347600
rosa_wichuraiana	Rw2G025890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	533
AccI	GTMKAC	1 cut(s)	861
AciI	CCGC	3 cut(s)	104, 239, 627
AclWI	GGATC	1 cut(s)	368
AcoI	YGGCCR	2 cut(s)	394, 410
AcuI	CTGAAG	1 cut(s)	522
AfaI	GTAC	1 cut(s)	655
AfeI	AGCGCT	1 cut(s)	898
AfiI	CCNNNNNNNGG	5 cut(s)	533, 572, 590, 761, 803
AgsI	TTSAA	3 cut(s)	112, 119, 233
AjnI	CCWGG	1 cut(s)	766
AluBI	AGCT	3 cut(s)	115, 123, 743
AluI	AGCT	3 cut(s)	115, 123, 743
Alw21I	GWGCWC	1 cut(s)	372
Alw26I	GTCTC	4 cut(s)	14, 258, 313, 511
Alw44I	GTGCAC	1 cut(s)	368
AlwI	GGATC	1 cut(s)	368
AlwNI	CAGNNNCTG	2 cut(s)	317, 746
Aor51HI	AGCGCT	1 cut(s)	898
AoxI	GGCC	2 cut(s)	394, 410
ApaLI	GTGCAC	1 cut(s)	368
ApeKI	GCWGC	6 cut(s)	348, 717, 740, 743, 746, 894
ArsI	GACNNNNNNTTYG	2 cut(s)	489, 521
AseI	ATTAAT	1 cut(s)	693
AspA2I	CCTAGG	1 cut(s)	905
AspLEI	GCGC	1 cut(s)	899
AspS9I	GGNCC	2 cut(s)	244, 764
AsuHPI	GGTGA	5 cut(s)	394, 677, 782, 827, 922
AvaII	GGWCC	2 cut(s)	244, 764
AvrII	CCTAGG	1 cut(s)	905
BaeGI	GKGCMC	2 cut(s)	372, 488
BalI	TGGCCA	2 cut(s)	396, 412
BbsI	GAAGAC	1 cut(s)	441
Bbv12I	GWGCWC	1 cut(s)	372
BbvI	GCAGC	6 cut(s)	360, 729, 730, 733, 752, 906
BccI	CCATC	4 cut(s)	205, 405, 574, 690
BceAI	ACGGC	1 cut(s)	91
BciT130I	CCWGG	1 cut(s)	768
BcoDI	GTCTC	4 cut(s)	14, 258, 313, 511
BfaI	CTAG	4 cut(s)	521, 831, 900, 906
BfmI	CTRYAG	1 cut(s)	346
BfoI	RGCGCY	1 cut(s)	900
BisI	GCNGC	6 cut(s)	349, 718, 741, 744, 747, 895
BlnI	CCTAGG	1 cut(s)	905
BlsI	GCNGC	6 cut(s)	350, 719, 742, 745, 748, 896
Bme1390I	CCNGG	1 cut(s)	768
Bme18I	GGWCC	2 cut(s)	244, 764
BmgT120I	GGNCC	2 cut(s)	244, 764
BmiI	GGNNCC	1 cut(s)	582
BmrFI	CCNGG	1 cut(s)	768
BmsI	GCATC	2 cut(s)	226, 747
BpiI	GAAGAC	1 cut(s)	441
BplI	GAGNNNNNCTC	2 cut(s)	706, 738
BpuEI	CTTGAG	3 cut(s)	65, 166, 708
BsaI	GGTCTC	1 cut(s)	313
BsaJI	CCNNGG	2 cut(s)	303, 905
BsaWI	WCCGGW	2 cut(s)	376, 687
Bsc4I	CCNNNNNNNGG	5 cut(s)	533, 572, 590, 761, 803
Bse1I	ACTGG	1 cut(s)	247
Bse3DI	GCAATG	1 cut(s)	32
BseBI	CCWGG	1 cut(s)	768
BseDI	CCNNGG	2 cut(s)	303, 905
BseGI	GGATG	1 cut(s)	49
BseLI	CCNNNNNNNGG	5 cut(s)	533, 572, 590, 761, 803
BseMI	GCAATG	1 cut(s)	32
BseMII	CTCAG	3 cut(s)	324, 686, 704
BseNI	ACTGG	1 cut(s)	247
BseSI	GKGCMC	2 cut(s)	372, 488
BseXI	GCAGC	6 cut(s)	360, 729, 730, 733, 752, 906
Bsh1285I	CGRYCG	1 cut(s)	804
BshFI	GGCC	2 cut(s)	396, 412
BsiEI	CGRYCG	1 cut(s)	804
BsiHKAI	GWGCWC	1 cut(s)	372
BsiSI	CCGG	2 cut(s)	377, 688
BslFI	GGGAC	1 cut(s)	509
BslI	CCNNNNNNNGG	5 cut(s)	533, 572, 590, 761, 803
BsmAI	GTCTC	4 cut(s)	14, 258, 313, 511
BsmBI	CGTCTC	1 cut(s)	258
BsmFI	GGGAC	1 cut(s)	509
BsnI	GGCC	2 cut(s)	396, 412
Bso31I	GGTCTC	1 cut(s)	313
Bsp1286I	GDGCHC	2 cut(s)	372, 488
Bsp143I	GATC	1 cut(s)	373
BspACI	CCGC	3 cut(s)	104, 239, 627
BspANI	GGCC	2 cut(s)	396, 412
BspCNI	CTCAG	3 cut(s)	323, 685, 705
BspLI	GGNNCC	1 cut(s)	582
BspMAI	CTGCAG	1 cut(s)	350
BspPI	GGATC	1 cut(s)	368
BspTNI	GGTCTC	1 cut(s)	313
BsrDI	GCAATG	1 cut(s)	32
BsrI	ACTGG	1 cut(s)	247
BssECI	CCNNGG	2 cut(s)	303, 905
BssMI	GATC	1 cut(s)	373
BssT1I	CCWWGG	1 cut(s)	905
Bst2UI	CCWGG	1 cut(s)	768
Bst4CI	ACNGT	2 cut(s)	483, 802
BstAPI	GCANNNNNTGC	3 cut(s)	354, 746, 925
BstC8I	GCNNGC	3 cut(s)	410, 892, 930
BstDEI	CTNAG	4 cut(s)	310, 358, 672, 713
BstEII	GGTNACC	1 cut(s)	382
BstF5I	GGATG	1 cut(s)	49
BstH2I	RGCGCY	1 cut(s)	900
BstHHI	GCGC	1 cut(s)	899
BstKTI	GATC	1 cut(s)	376
BstMAI	GTCTC	4 cut(s)	14, 258, 313, 511
BstMBI	GATC	1 cut(s)	373
BstMCI	CGRYCG	1 cut(s)	804
BstMWI	GCNNNNNNNGC	8 cut(s)	112, 354, 414, 492, 562, 746, 896, 925
BstNI	CCWGG	1 cut(s)	768
BstNSI	RCATGY	1 cut(s)	923
BstPI	GGTNACC	1 cut(s)	382
BstSCI	CCNGG	1 cut(s)	766
BstSFI	CTRYAG	1 cut(s)	346
BstSLI	GKGCMC	2 cut(s)	372, 488
BstV1I	GCAGC	6 cut(s)	360, 729, 730, 733, 752, 906
BstV2I	GAAGAC	1 cut(s)	441
BstXI	CCANNNNNNTGG	1 cut(s)	211
BsuRI	GGCC	2 cut(s)	396, 412
BtsCI	GGATG	1 cut(s)	49
BtsIMutI	CAGTG	1 cut(s)	488
Cac8I	GCNNGC	3 cut(s)	410, 892, 930
CaiI	CAGNNNCTG	2 cut(s)	317, 746
CfoI	GCGC	1 cut(s)	899
Cfr13I	GGNCC	2 cut(s)	244, 764
Csp6I	GTAC	1 cut(s)	654
CspCI	CAANNNNNGTGG	2 cut(s)	313, 348
CviAII	CATG	3 cut(s)	414, 761, 920
CviQI	GTAC	1 cut(s)	654
DdeI	CTNAG	4 cut(s)	310, 358, 672, 713
DpnI	GATC	1 cut(s)	375
DpnII	GATC	1 cut(s)	373
EaeI	YGGCCR	2 cut(s)	394, 410
EciI	GGCGGA	1 cut(s)	93
Eco130I	CCWWGG	1 cut(s)	905
Eco31I	GGTCTC	1 cut(s)	313
Eco47I	GGWCC	2 cut(s)	244, 764
Eco47III	AGCGCT	1 cut(s)	898
Eco57I	CTGAAG	1 cut(s)	522
Eco91I	GGTNACC	1 cut(s)	382
EcoO65I	GGTNACC	1 cut(s)	382
EcoRII	CCWGG	1 cut(s)	766
EcoT14I	CCWWGG	1 cut(s)	905
EcoT22I	ATGCAT	2 cut(s)	419, 762
ErhI	CCWWGG	1 cut(s)	905
Esp3I	CGTCTC	1 cut(s)	258
FaeI	CATG	3 cut(s)	417, 764, 923
FaqI	GGGAC	1 cut(s)	509
FatI	CATG	3 cut(s)	413, 760, 919
FauI	CCCGC	1 cut(s)	620
FauNDI	CATATG	1 cut(s)	353
FblI	GTMKAC	1 cut(s)	861
Fnu4HI	GCNGC	6 cut(s)	349, 718, 741, 744, 747, 895
FokI	GGATG	1 cut(s)	36
Fsp4HI	GCNGC	6 cut(s)	349, 718, 741, 744, 747, 895
FspBI	CTAG	4 cut(s)	521, 831, 900, 906
GlaI	GCGC	1 cut(s)	898
GluI	GCNGC	6 cut(s)	349, 718, 741, 744, 747, 895
HaeII	RGCGCY	1 cut(s)	900
HaeIII	GGCC	2 cut(s)	396, 412
HapII	CCGG	2 cut(s)	377, 688
HhaI	GCGC	1 cut(s)	899
Hin1II	CATG	3 cut(s)	417, 764, 923
Hin6I	GCGC	1 cut(s)	897
HinP1I	GCGC	1 cut(s)	897
HincII	GTYRAC	1 cut(s)	634
HindII	GTYRAC	1 cut(s)	634
HindIII	AAGCTT	1 cut(s)	113
HinfI	GANTC	6 cut(s)	292, 314, 362, 430, 442, 512
HpaII	CCGG	2 cut(s)	377, 688
HphI	GGTGA	5 cut(s)	394, 677, 782, 827, 922
Hpy166II	GTNNAC	3 cut(s)	370, 634, 862
Hpy188I	TCNGA	6 cut(s)	304, 313, 319, 454, 511, 798
Hpy188III	TCNNGA	2 cut(s)	183, 439
Hpy8I	GTNNAC	3 cut(s)	370, 634, 862
Hpy99I	CGWCG	1 cut(s)	802
HpyAV	CCTTC	2 cut(s)	145, 909
HpyCH4III	ACNGT	2 cut(s)	483, 802
HpyCH4V	TGCA	8 cut(s)	26, 348, 370, 417, 495, 740, 760, 928
HpyF10VI	GCNNNNNNNGC	8 cut(s)	112, 354, 414, 492, 562, 746, 896, 925
HpyF3I	CTNAG	4 cut(s)	310, 358, 672, 713
Hsp92II	CATG	3 cut(s)	417, 764, 923
HspAI	GCGC	1 cut(s)	897
Kzo9I	GATC	1 cut(s)	373
LmnI	GCTCC	2 cut(s)	586, 625
Lsp1109I	GCAGC	6 cut(s)	360, 729, 730, 733, 752, 906
LweI	GCATC	2 cut(s)	226, 747
MaeI	CTAG	4 cut(s)	521, 831, 900, 906
MaeIII	GTNAC	3 cut(s)	335, 382, 842
MalI	GATC	1 cut(s)	375
MboI	GATC	1 cut(s)	373
MboII	GAAGA	4 cut(s)	61, 68, 245, 441
MhlI	GDGCHC	2 cut(s)	372, 488
MlsI	TGGCCA	2 cut(s)	396, 412
MluCI	AATT	2 cut(s)	874, 990
MluNI	TGGCCA	2 cut(s)	396, 412
MlyI	GAGTC	3 cut(s)	323, 356, 436
MmeI	TCCRAC	2 cut(s)	276, 821
MnlI	CCTC	6 cut(s)	48, 96, 298, 526, 624, 722
Mox20I	TGGCCA	2 cut(s)	396, 412
Mph1103I	ATGCAT	2 cut(s)	419, 762
MscI	TGGCCA	2 cut(s)	396, 412
MseI	TTAA	4 cut(s)	173, 207, 693, 791
MslI	CAYNNNNRTG	1 cut(s)	209
Msp20I	TGGCCA	2 cut(s)	396, 412
MspA1I	CMGCKG	1 cut(s)	743
MspI	CCGG	2 cut(s)	377, 688
MspR9I	CCNGG	1 cut(s)	768
MvaI	CCWGG	1 cut(s)	768
MwoI	GCNNNNNNNGC	8 cut(s)	112, 354, 414, 492, 562, 746, 896, 925
NdeI	CATATG	1 cut(s)	353
NdeII	GATC	1 cut(s)	373
NlaIII	CATG	3 cut(s)	417, 764, 923
NlaIV	GGNNCC	1 cut(s)	582
NmuCI	GTSAC	1 cut(s)	382
NsiI	ATGCAT	2 cut(s)	419, 762
NspI	RCATGY	1 cut(s)	923
PfeI	GAWTC	3 cut(s)	292, 430, 512
PflFI	GACNNNGTC	1 cut(s)	445
PflMI	CCANNNNNTGG	1 cut(s)	533
PkrI	GCNGC	6 cut(s)	350, 719, 742, 745, 748, 896
PleI	GAGTC	3 cut(s)	322, 356, 436
PpsI	GAGTC	3 cut(s)	322, 356, 436
PshBI	ATTAAT	1 cut(s)	693
Psp6I	CCWGG	1 cut(s)	766
PspEI	GGTNACC	1 cut(s)	382
PspGI	CCWGG	1 cut(s)	766
PspN4I	GGNNCC	1 cut(s)	582
PspPI	GGNCC	2 cut(s)	244, 764
PsrI	GAACNNNNNNTAC	2 cut(s)	637, 669
PstI	CTGCAG	1 cut(s)	350
PstNI	CAGNNNCTG	2 cut(s)	317, 746
PsyI	GACNNNGTC	1 cut(s)	445
PvuII	CAGCTG	1 cut(s)	743
RsaI	GTAC	1 cut(s)	655
RsaNI	GTAC	1 cut(s)	654
RseI	CAYNNNNRTG	1 cut(s)	209
SaqAI	TTAA	4 cut(s)	173, 207, 693, 791
SatI	GCNGC	6 cut(s)	349, 718, 741, 744, 747, 895
Sau3AI	GATC	1 cut(s)	373
Sau96I	GGNCC	2 cut(s)	244, 764
SchI	GAGTC	3 cut(s)	323, 356, 436
ScrFI	CCNGG	1 cut(s)	768
SduI	GDGCHC	2 cut(s)	372, 488
SetI	ASST	7 cut(s)	117, 125, 309, 616, 733, 745, 888
SfaNI	GCATC	2 cut(s)	226, 747
SfcI	CTRYAG	1 cut(s)	346
SinI	GGWCC	2 cut(s)	244, 764
SmiMI	CAYNNNNRTG	1 cut(s)	209
SmlI	CTYRAG	3 cut(s)	80, 181, 723
SmoI	CTYRAG	3 cut(s)	80, 181, 723
Sse9I	AATT	2 cut(s)	874, 990
SsiI	CCGC	3 cut(s)	104, 239, 627
SspI	AATATT	1 cut(s)	589
SspMI	CTAG	4 cut(s)	521, 831, 900, 906
StyD4I	CCNGG	1 cut(s)	766
StyI	CCWWGG	1 cut(s)	905
TaaI	ACNGT	2 cut(s)	483, 802
TaqI	TCGA	1 cut(s)	848
TasI	AATT	2 cut(s)	874, 990
TfiI	GAWTC	3 cut(s)	292, 430, 512
Tru1I	TTAA	4 cut(s)	173, 207, 693, 791
Tru9I	TTAA	4 cut(s)	173, 207, 693, 791
TscAI	CASTG	1 cut(s)	488
TseFI	GTSAC	1 cut(s)	382
TseI	GCWGC	6 cut(s)	348, 717, 740, 743, 746, 894
Tsp45I	GTSAC	1 cut(s)	382
TspDTI	ATGAA	1 cut(s)	267
TspGWI	ACGGA	3 cut(s)	54, 435, 681
TspRI	CASTG	1 cut(s)	488
Tth111I	GACNNNGTC	1 cut(s)	445
Van91I	CCANNNNNTGG	1 cut(s)	533
VneI	GTGCAC	1 cut(s)	368
VpaK11BI	GGWCC	2 cut(s)	244, 764
VspI	ATTAAT	1 cut(s)	693
XceI	RCATGY	1 cut(s)	923
XmaJI	CCTAGG	1 cut(s)	905
XmiI	GTMKAC	1 cut(s)	861
XspI	CTAG	4 cut(s)	521, 831, 900, 906
Zsp2I	ATGCAT	2 cut(s)	419, 762

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.