Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0008226

Physical Location & Seq

Genomic Coordinates Forward (+)

16888232 .. 16888846

Gene Structure 615 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g16560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGATCCAGTGGTCACCCTCTGTGGTCACCTCTACTGCTGGCCTTGCATATACAAGTGGCTTCAGTTCCAAAGCCCGTCTTCTGAAAACCAAGATGAGCAGAAACAGCCCCAGTGCCCTGTATGCAAAGCTGAAGTCTCCGAGTCCTCTCTAGTCCCACTCTACGGCCGAGGACAAACAACCAAACCCCCAAAGCCCTCCAAGGGCAAGGCTCCTCATCTTGGCATAGTGATTCCGAGAAGACCCTTTCGTCCTTGTGGGGTTGACACACCGCGATCAGCCCGTACCCCCACCAGTCAATACGTTACCCCGCAACTTCATCATCGGAGTTCTCCTTACGGTTCACAACTAAACAGTCCCCTACAAGAACCAATGAATAGTCCTGGCATCGCCACAACCGCGATCAATCCAGTAGCTGACATGTTTGGTGAAATGGTATATGCAAGGGTTTTTGGCAACTCGTTAACAAACTGGTATACCAATTCGAATTCGTATAATCTGGCGGGGAGTGGTAGTCCGAGGGTTAGAAGGCATGTAATGCAGGCTGATAAGTCGCTCAGCAGAATATGTTTTTTTCTCTTCTGTTGCTTTATGCTGTGCCTTGTTTTGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009611 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010243 GO:0010498 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031984 GO:0032446 GO:0032527 GO:0032991 GO:0033036 GO:0033554 GO:0034613 GO:0034976 GO:0035966 GO:0035967 GO:0036211 GO:0036503 GO:0036513 GO:0042175 GO:0042221 GO:0042886 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050896 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0051788 GO:0070647 GO:0070727 GO:0070887 GO:0071218 GO:0071310 GO:0071702 GO:0071704 GO:0071705 GO:0071712 GO:0098796 GO:0098827 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

zf-C3HC4 zf-C3HC4_2 zf-RING_UBOX

Protein Analysis

205

Amino Acids

22.8

Weight (kDa)

9.17

Isoelectric Point (pI)

52.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4	PF00097	2 - 42	1.5e-06	Zinc finger, C3HC4 type (RING finger)
RING_XB3-XBAT31	PF24921	5 - 46	2.1e-06	E3 ubiquitin-protein ligase XB3/XBAT31 RING finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008226)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03510 AT4G03510 AT4G03510 AT4G03510
fragaria_vesca	FvH4_6g26170
malus_domestica	MD09G1248700.v1.1 MD17G1241200.v1.1
prunus_persica	Prupe.3G137000_v2.0.a1
pyrus_communis	pycom09g16560 pycom17g24430 pycom17g24440 pycom17g24450
rosa_chinensis	RchiOBHm_Chr2g0126321
rosa_laevigata	RLG00000018901
rosa_multiflora	Rmu_ssc0000264.1_g000040
rosa_roxburghii	Rroxscaffold_2G00117240
rosa_rugosa	Rorug02G0262600 Rorug02G0262700
rosa_samantha	Rh2AG319500 Rh2BG327900 Rh2CG307800 Rh2DG347600
rosa_wichuraiana	Rw2G025890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	249
AccI	GTMKAC	1 cut(s)	476
AccII	CGCG	2 cut(s)	274, 401
AciI	CCGC	4 cut(s)	272, 311, 399, 503
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	1 cut(s)	166
AcsI	RAATTY	1 cut(s)	487
AcuI	CTGAAG	2 cut(s)	47, 153
AfaI	GTAC	1 cut(s)	286
AfiI	CCNNNNNNNGG	3 cut(s)	164, 203, 221
AflIII	ACRYGT	1 cut(s)	420
AjnI	CCWGG	1 cut(s)	382
AluBI	AGCT	2 cut(s)	131, 416
AluI	AGCT	2 cut(s)	131, 416
Alw26I	GTCTC	1 cut(s)	142
AlwI	GGATC	1 cut(s)	12
AlwNI	CAGNNNCTG	1 cut(s)	416
AoxI	GGCC	2 cut(s)	41, 166
ApoI	RAATTY	1 cut(s)	487
ArsI	GACNNNNNNTTYG	2 cut(s)	120, 152
AsuHPI	GGTGA	3 cut(s)	7, 20, 440
AsuII	TTCGAA	1 cut(s)	485
BaeGI	GKGCMC	1 cut(s)	119
BamHI	GGATCC	1 cut(s)	4
BbsI	GAAGAC	2 cut(s)	72, 247
BceAI	ACGGC	1 cut(s)	181
BciT130I	CCWGG	1 cut(s)	384
BcoDI	GTCTC	1 cut(s)	142
BfaI	CTAG	1 cut(s)	152
BlpI	GCTNAGC	1 cut(s)	557
Bme1390I	CCNGG	1 cut(s)	384
BmiI	GGNNCC	2 cut(s)	6, 213
BmrFI	CCNGG	1 cut(s)	384
BmrI	ACTGGG	1 cut(s)	106
BmsI	GCATC	1 cut(s)	396
BmuI	ACTGGG	1 cut(s)	106
BpiI	GAAGAC	2 cut(s)	72, 247
Bpu1102I	GCTNAGC	1 cut(s)	557
Bpu14I	TTCGAA	1 cut(s)	485
BsaJI	CCNNGG	3 cut(s)	169, 201, 518
BsaXI	ACNNNNNCTCC	2 cut(s)	499, 529
Bsc4I	CCNNNNNNNGG	3 cut(s)	164, 203, 221
Bse1I	ACTGG	5 cut(s)	8, 112, 294, 410, 476
BseBI	CCWGG	1 cut(s)	384
BseDI	CCNNGG	3 cut(s)	169, 201, 518
BseLI	CCNNNNNNNGG	3 cut(s)	164, 203, 221
BseMII	CTCAG	1 cut(s)	571
BseNI	ACTGG	5 cut(s)	8, 112, 294, 410, 476
BseRI	GAGGAG	1 cut(s)	204
BseSI	GKGCMC	1 cut(s)	119
BseX3I	CGGCCG	1 cut(s)	166
Bsh1236I	CGCG	2 cut(s)	274, 401
Bsh1285I	CGRYCG	1 cut(s)	169
BshFI	GGCC	2 cut(s)	43, 168
BsiEI	CGRYCG	1 cut(s)	169
BslFI	GGGAC	2 cut(s)	140, 342
BslI	CCNNNNNNNGG	3 cut(s)	164, 203, 221
BsmAI	GTCTC	1 cut(s)	142
BsmFI	GGGAC	2 cut(s)	140, 342
BsnI	GGCC	2 cut(s)	43, 168
Bsp119I	TTCGAA	1 cut(s)	485
Bsp1286I	GDGCHC	1 cut(s)	119
Bsp143I	GATC	3 cut(s)	4, 275, 402
Bsp1720I	GCTNAGC	1 cut(s)	557
BspACI	CCGC	4 cut(s)	272, 311, 399, 503
BspANI	GGCC	2 cut(s)	43, 168
BspCNI	CTCAG	1 cut(s)	570
BspFNI	CGCG	2 cut(s)	274, 401
BspLI	GGNNCC	2 cut(s)	6, 213
BspPI	GGATC	1 cut(s)	12
BspT104I	TTCGAA	1 cut(s)	485
BsrI	ACTGG	5 cut(s)	8, 112, 294, 410, 476
BssECI	CCNNGG	3 cut(s)	169, 201, 518
BssMI	GATC	3 cut(s)	4, 275, 402
BssNAI	GTATAC	1 cut(s)	477
BssT1I	CCWWGG	1 cut(s)	201
Bst1107I	GTATAC	1 cut(s)	477
Bst2UI	CCWGG	1 cut(s)	384
Bst4CI	ACNGT	2 cut(s)	341, 356
Bst6I	CTCTTC	1 cut(s)	584
BstAPI	GCANNNNNTGC	1 cut(s)	538
BstBI	TTCGAA	1 cut(s)	485
BstC8I	GCNNGC	2 cut(s)	41, 543
BstDEI	CTNAG	1 cut(s)	557
BstEII	GGTNACC	2 cut(s)	13, 26
BstFNI	CGCG	2 cut(s)	274, 401
BstKTI	GATC	3 cut(s)	7, 278, 405
BstMAI	GTCTC	1 cut(s)	142
BstMBI	GATC	3 cut(s)	4, 275, 402
BstMCI	CGRYCG	1 cut(s)	169
BstMWI	GCNNNNNNNGC	5 cut(s)	45, 106, 123, 398, 538
BstNI	CCWGG	1 cut(s)	384
BstNSI	RCATGY	2 cut(s)	424, 536
BstPI	GGTNACC	2 cut(s)	13, 26
BstSCI	CCNGG	1 cut(s)	382
BstSLI	GKGCMC	1 cut(s)	119
BstUI	CGCG	2 cut(s)	274, 401
BstV2I	GAAGAC	2 cut(s)	72, 247
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BstZ17I	GTATAC	1 cut(s)	477
BstZI	CGGCCG	1 cut(s)	166
BsuRI	GGCC	2 cut(s)	43, 168
BtgZI	GCGATG	1 cut(s)	373
BtsIMutI	CAGTG	2 cut(s)	15, 119
Cac8I	GCNNGC	2 cut(s)	41, 543
CaiI	CAGNNNCTG	1 cut(s)	416
Csp6I	GTAC	1 cut(s)	285
CviAII	CATG	2 cut(s)	421, 533
CviQI	GTAC	1 cut(s)	285
DdeI	CTNAG	1 cut(s)	557
DpnI	GATC	3 cut(s)	6, 277, 404
DpnII	GATC	3 cut(s)	4, 275, 402
DrdI	GACNNNNNNGTC	1 cut(s)	249
DseDI	GACNNNNNNGTC	1 cut(s)	249
EaeI	YGGCCR	1 cut(s)	166
EagI	CGGCCG	1 cut(s)	166
Eam1104I	CTCTTC	1 cut(s)	584
EarI	CTCTTC	1 cut(s)	584
EclXI	CGGCCG	1 cut(s)	166
Eco130I	CCWWGG	1 cut(s)	201
Eco52I	CGGCCG	1 cut(s)	166
Eco57I	CTGAAG	2 cut(s)	47, 153
Eco91I	GGTNACC	2 cut(s)	13, 26
EcoO65I	GGTNACC	2 cut(s)	13, 26
EcoRI	GAATTC	1 cut(s)	487
EcoRII	CCWGG	1 cut(s)	382
EcoT14I	CCWWGG	1 cut(s)	201
ErhI	CCWWGG	1 cut(s)	201
FaeI	CATG	2 cut(s)	424, 536
FalI	AAGNNNNNCTT	2 cut(s)	64, 96
FaqI	GGGAC	2 cut(s)	140, 342
FatI	CATG	2 cut(s)	420, 532
FauI	CCCGC	2 cut(s)	318, 496
FblI	GTMKAC	1 cut(s)	476
FspBI	CTAG	1 cut(s)	152
HaeIII	GGCC	2 cut(s)	43, 168
Hin1II	CATG	2 cut(s)	424, 536
HincII	GTYRAC	2 cut(s)	265, 465
HindII	GTYRAC	2 cut(s)	265, 465
HinfI	GANTC	2 cut(s)	143, 232
HpaI	GTTAAC	1 cut(s)	465
HphI	GGTGA	3 cut(s)	7, 20, 440
Hpy166II	GTNNAC	4 cut(s)	265, 344, 465, 477
Hpy188I	TCNGA	6 cut(s)	85, 142, 237, 327, 519, 614
Hpy8I	GTNNAC	4 cut(s)	265, 344, 465, 477
HpyAV	CCTTC	1 cut(s)	522
HpyCH4III	ACNGT	2 cut(s)	341, 356
HpyCH4IV	ACGT	1 cut(s)	303
HpyCH4V	TGCA	4 cut(s)	48, 126, 443, 541
HpyF10VI	GCNNNNNNNGC	5 cut(s)	45, 106, 123, 398, 538
HpyF3I	CTNAG	1 cut(s)	557
HpySE526I	ACGT	1 cut(s)	303
Hsp92II	CATG	2 cut(s)	424, 536
KspAI	GTTAAC	1 cut(s)	465
Kzo9I	GATC	3 cut(s)	4, 275, 402
LmnI	GCTCC	1 cut(s)	217
LweI	GCATC	1 cut(s)	396
MaeI	CTAG	1 cut(s)	152
MaeII	ACGT	1 cut(s)	303
MaeIII	GTNAC	3 cut(s)	13, 26, 304
MalI	GATC	3 cut(s)	6, 277, 404
MboI	GATC	3 cut(s)	4, 275, 402
MboII	GAAGA	3 cut(s)	72, 252, 571
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	1 cut(s)	119
MluCI	AATT	2 cut(s)	481, 487
MlyI	GAGTC	1 cut(s)	152
MnlI	CCTC	7 cut(s)	29, 41, 157, 164, 208, 225, 513
MseI	TTAA	1 cut(s)	464
MspR9I	CCNGG	1 cut(s)	384
MvaI	CCWGG	1 cut(s)	384
MvnI	CGCG	2 cut(s)	274, 401
MwoI	GCNNNNNNNGC	5 cut(s)	45, 106, 123, 398, 538
NdeII	GATC	3 cut(s)	4, 275, 402
NlaIII	CATG	2 cut(s)	424, 536
NlaIV	GGNNCC	2 cut(s)	6, 213
NmeAIII	GCCGAG	1 cut(s)	194
NmuCI	GTSAC	2 cut(s)	13, 26
NspI	RCATGY	2 cut(s)	424, 536
NspV	TTCGAA	1 cut(s)	485
PciI	ACATGT	1 cut(s)	420
PfeI	GAWTC	1 cut(s)	232
PleI	GAGTC	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	151
PscI	ACATGT	1 cut(s)	420
Psp6I	CCWGG	1 cut(s)	382
PspEI	GGTNACC	2 cut(s)	13, 26
PspGI	CCWGG	1 cut(s)	382
PspN4I	GGNNCC	2 cut(s)	6, 213
PstNI	CAGNNNCTG	1 cut(s)	416
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	1 cut(s)	286
RsaNI	GTAC	1 cut(s)	285
SaqAI	TTAA	1 cut(s)	464
Sau3AI	GATC	3 cut(s)	4, 275, 402
SchI	GAGTC	1 cut(s)	152
ScrFI	CCNGG	1 cut(s)	384
SduI	GDGCHC	1 cut(s)	119
SetI	ASST	4 cut(s)	33, 133, 306, 418
SfaNI	GCATC	1 cut(s)	396
SfuI	TTCGAA	1 cut(s)	485
Sse9I	AATT	2 cut(s)	481, 487
SsiI	CCGC	4 cut(s)	272, 311, 399, 503
SspMI	CTAG	1 cut(s)	152
StyD4I	CCNGG	1 cut(s)	382
StyI	CCWWGG	1 cut(s)	201
TaaI	ACNGT	2 cut(s)	341, 356
TaiI	ACGT	1 cut(s)	306
TaqI	TCGA	1 cut(s)	485
TasI	AATT	2 cut(s)	481, 487
TfiI	GAWTC	1 cut(s)	232
Tru1I	TTAA	1 cut(s)	464
Tru9I	TTAA	1 cut(s)	464
TscAI	CASTG	2 cut(s)	15, 119
TseFI	GTSAC	2 cut(s)	13, 26
Tsp45I	GTSAC	2 cut(s)	13, 26
TspDTI	ATGAA	2 cut(s)	308, 389
TspRI	CASTG	2 cut(s)	15, 119
XapI	RAATTY	1 cut(s)	487
XceI	RCATGY	2 cut(s)	424, 536
XmiI	GTMKAC	1 cut(s)	476
XspI	CTAG	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.