Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000264.1

Orthogroup ID

OG0008226

Physical Location & Seq

Genomic Coordinates Reverse (-)

225549 .. 227587

Gene Structure 2039 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000264.1_g000040.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

atgttttgtctctctatatatattgcaaccccattgcctctttcctatcatcctttccattctccgttcttcgttcttctcaagcctctcgttctctgtgttccgccgttgaagcttcaaagctcttattacgccttcacaaacaaaacccacttctctactcttgctgatttaagcaactcaagaatacatctaccccaatccattaagatggcaacagagcaatactttgaagatgcggtggtccagtccaactccattggagacgataaatgttcatttggaaaatggaatcctgtttccgaggtctcagagtctgaaaacaagtcctgtggtaactttgactgcagcatatgcttagactctgtgcacgatccggtggtgaccctgtgtggccatctatactgctggccatgcatatacaagtggattcagttccagactccgtcttctgaaagccaagagaaccaaaaacagccacagtgccctgtttgcaaaactgaagtctccgaatcctctctagtcccactctatggtcgtggtcaaacaacaaagcccacgaagccatctaaaggcaaggctcccaatattggtatagtcattccaaaaagacctctcgctccttgcggggttgacacaccacgaaccccaagtaccagcccttacggaactcagcaactccatcaccggattaatccttatcaatcccaactgagcagcactcaaggaggtagttatgcagctgctgctttaccgatgcatggtcctggtgatacagcaacacaagtcttaaatccgacggtcggcttgtttggtgaaatggtgtatgctagggtgtttggtaactcgataacaaatgtctacacataccctaattcgtataaccttgctggcagcgctagtcctagggtgagaaggcatgtattgcaggctgataagtcgctcaacagaatgtgtttttttctgttttgttgctttatgttgtgcctaattttgttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009611 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010243 GO:0010498 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031984 GO:0032446 GO:0032527 GO:0032991 GO:0033036 GO:0033554 GO:0034613 GO:0034976 GO:0035966 GO:0035967 GO:0036211 GO:0036503 GO:0036513 GO:0042175 GO:0042221 GO:0042886 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050896 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0051788 GO:0070647 GO:0070727 GO:0070887 GO:0071218 GO:0071310 GO:0071702 GO:0071704 GO:0071705 GO:0071712 GO:0098796 GO:0098827 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

zf-C3HC4 zf-C3HC4_2 zf-RING_UBOX

Protein Analysis

333

Amino Acids

36.9

Weight (kDa)

8.53

Isoelectric Point (pI)

50.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008226)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03510 AT4G03510 AT4G03510 AT4G03510
fragaria_vesca	FvH4_6g26170
malus_domestica	MD09G1248700.v1.1 MD17G1241200.v1.1
prunus_persica	Prupe.3G137000_v2.0.a1
pyrus_communis	pycom09g16560 pycom17g24430 pycom17g24440 pycom17g24450
rosa_chinensis	RchiOBHm_Chr2g0126321
rosa_laevigata	RLG00000018901
rosa_multiflora	Rmu_ssc0000264.1_g000040
rosa_roxburghii	Rroxscaffold_2G00117240
rosa_rugosa	Rorug02G0262600 Rorug02G0262700
rosa_samantha	Rh2AG319500 Rh2BG327900 Rh2CG307800 Rh2DG347600
rosa_wichuraiana	Rw2G025890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	533
AccI	GTMKAC	1 cut(s)	861
AciI	CCGC	3 cut(s)	104, 239, 627
AclWI	GGATC	1 cut(s)	368
AcoI	YGGCCR	2 cut(s)	394, 410
AcuI	CTGAAG	1 cut(s)	522
AfaI	GTAC	1 cut(s)	655
AfeI	AGCGCT	1 cut(s)	898
AfiI	CCNNNNNNNGG	5 cut(s)	533, 572, 590, 761, 803
AgsI	TTSAA	3 cut(s)	112, 119, 233
AjnI	CCWGG	1 cut(s)	766
AluBI	AGCT	3 cut(s)	115, 123, 743
AluI	AGCT	3 cut(s)	115, 123, 743
Alw21I	GWGCWC	1 cut(s)	372
Alw26I	GTCTC	4 cut(s)	14, 258, 313, 511
Alw44I	GTGCAC	1 cut(s)	368
AlwI	GGATC	1 cut(s)	368
AlwNI	CAGNNNCTG	2 cut(s)	317, 746
Aor51HI	AGCGCT	1 cut(s)	898
AoxI	GGCC	2 cut(s)	394, 410
ApaLI	GTGCAC	1 cut(s)	368
ApeKI	GCWGC	6 cut(s)	348, 717, 740, 743, 746, 894
ArsI	GACNNNNNNTTYG	2 cut(s)	489, 521
AseI	ATTAAT	1 cut(s)	693
AspA2I	CCTAGG	1 cut(s)	905
AspLEI	GCGC	1 cut(s)	899
AspS9I	GGNCC	2 cut(s)	244, 764
AsuHPI	GGTGA	5 cut(s)	394, 677, 782, 827, 922
AvaII	GGWCC	2 cut(s)	244, 764
AvrII	CCTAGG	1 cut(s)	905
BaeGI	GKGCMC	2 cut(s)	372, 488
BalI	TGGCCA	2 cut(s)	396, 412
BbsI	GAAGAC	1 cut(s)	441
Bbv12I	GWGCWC	1 cut(s)	372
BbvI	GCAGC	6 cut(s)	360, 729, 730, 733, 752, 906
BccI	CCATC	4 cut(s)	205, 405, 574, 690
BceAI	ACGGC	1 cut(s)	91
BciT130I	CCWGG	1 cut(s)	768
BcoDI	GTCTC	4 cut(s)	14, 258, 313, 511
BfaI	CTAG	4 cut(s)	521, 831, 900, 906
BfmI	CTRYAG	1 cut(s)	346
BfoI	RGCGCY	1 cut(s)	900
BisI	GCNGC	6 cut(s)	349, 718, 741, 744, 747, 895
BlnI	CCTAGG	1 cut(s)	905
BlsI	GCNGC	6 cut(s)	350, 719, 742, 745, 748, 896
Bme1390I	CCNGG	1 cut(s)	768
Bme18I	GGWCC	2 cut(s)	244, 764
BmgT120I	GGNCC	2 cut(s)	244, 764
BmiI	GGNNCC	1 cut(s)	582
BmrFI	CCNGG	1 cut(s)	768
BmsI	GCATC	2 cut(s)	226, 747
BpiI	GAAGAC	1 cut(s)	441
BplI	GAGNNNNNCTC	2 cut(s)	706, 738
BpuEI	CTTGAG	3 cut(s)	65, 166, 708
BsaI	GGTCTC	1 cut(s)	313
BsaJI	CCNNGG	2 cut(s)	303, 905
BsaWI	WCCGGW	2 cut(s)	376, 687
Bsc4I	CCNNNNNNNGG	5 cut(s)	533, 572, 590, 761, 803
Bse1I	ACTGG	1 cut(s)	247
Bse3DI	GCAATG	1 cut(s)	32
BseBI	CCWGG	1 cut(s)	768
BseDI	CCNNGG	2 cut(s)	303, 905
BseGI	GGATG	1 cut(s)	49
BseLI	CCNNNNNNNGG	5 cut(s)	533, 572, 590, 761, 803
BseMI	GCAATG	1 cut(s)	32
BseMII	CTCAG	3 cut(s)	324, 686, 704
BseNI	ACTGG	1 cut(s)	247
BseSI	GKGCMC	2 cut(s)	372, 488
BseXI	GCAGC	6 cut(s)	360, 729, 730, 733, 752, 906
Bsh1285I	CGRYCG	1 cut(s)	804
BshFI	GGCC	2 cut(s)	396, 412
BsiEI	CGRYCG	1 cut(s)	804
BsiHKAI	GWGCWC	1 cut(s)	372
BsiSI	CCGG	2 cut(s)	377, 688
BslFI	GGGAC	1 cut(s)	509
BslI	CCNNNNNNNGG	5 cut(s)	533, 572, 590, 761, 803
BsmAI	GTCTC	4 cut(s)	14, 258, 313, 511
BsmBI	CGTCTC	1 cut(s)	258
BsmFI	GGGAC	1 cut(s)	509
BsnI	GGCC	2 cut(s)	396, 412
Bso31I	GGTCTC	1 cut(s)	313
Bsp1286I	GDGCHC	2 cut(s)	372, 488
Bsp143I	GATC	1 cut(s)	373
BspACI	CCGC	3 cut(s)	104, 239, 627
BspANI	GGCC	2 cut(s)	396, 412
BspCNI	CTCAG	3 cut(s)	323, 685, 705
BspLI	GGNNCC	1 cut(s)	582
BspMAI	CTGCAG	1 cut(s)	350
BspPI	GGATC	1 cut(s)	368
BspTNI	GGTCTC	1 cut(s)	313
BsrDI	GCAATG	1 cut(s)	32
BsrI	ACTGG	1 cut(s)	247
BssECI	CCNNGG	2 cut(s)	303, 905
BssMI	GATC	1 cut(s)	373
BssT1I	CCWWGG	1 cut(s)	905
Bst2UI	CCWGG	1 cut(s)	768
Bst4CI	ACNGT	2 cut(s)	483, 802
BstAPI	GCANNNNNTGC	3 cut(s)	354, 746, 925
BstC8I	GCNNGC	3 cut(s)	410, 892, 930
BstDEI	CTNAG	4 cut(s)	310, 358, 672, 713
BstEII	GGTNACC	1 cut(s)	382
BstF5I	GGATG	1 cut(s)	49
BstH2I	RGCGCY	1 cut(s)	900
BstHHI	GCGC	1 cut(s)	899
BstKTI	GATC	1 cut(s)	376
BstMAI	GTCTC	4 cut(s)	14, 258, 313, 511
BstMBI	GATC	1 cut(s)	373
BstMCI	CGRYCG	1 cut(s)	804
BstMWI	GCNNNNNNNGC	8 cut(s)	112, 354, 414, 492, 562, 746, 896, 925
BstNI	CCWGG	1 cut(s)	768
BstNSI	RCATGY	1 cut(s)	923
BstPI	GGTNACC	1 cut(s)	382
BstSCI	CCNGG	1 cut(s)	766
BstSFI	CTRYAG	1 cut(s)	346
BstSLI	GKGCMC	2 cut(s)	372, 488
BstV1I	GCAGC	6 cut(s)	360, 729, 730, 733, 752, 906
BstV2I	GAAGAC	1 cut(s)	441
BstXI	CCANNNNNNTGG	1 cut(s)	211
BsuRI	GGCC	2 cut(s)	396, 412
BtsCI	GGATG	1 cut(s)	49
BtsIMutI	CAGTG	1 cut(s)	488
Cac8I	GCNNGC	3 cut(s)	410, 892, 930
CaiI	CAGNNNCTG	2 cut(s)	317, 746
CfoI	GCGC	1 cut(s)	899
Cfr13I	GGNCC	2 cut(s)	244, 764
Csp6I	GTAC	1 cut(s)	654
CspCI	CAANNNNNGTGG	2 cut(s)	313, 348
CviAII	CATG	3 cut(s)	414, 761, 920
CviQI	GTAC	1 cut(s)	654
DdeI	CTNAG	4 cut(s)	310, 358, 672, 713
DpnI	GATC	1 cut(s)	375
DpnII	GATC	1 cut(s)	373
EaeI	YGGCCR	2 cut(s)	394, 410
EciI	GGCGGA	1 cut(s)	93
Eco130I	CCWWGG	1 cut(s)	905
Eco31I	GGTCTC	1 cut(s)	313
Eco47I	GGWCC	2 cut(s)	244, 764
Eco47III	AGCGCT	1 cut(s)	898
Eco57I	CTGAAG	1 cut(s)	522
Eco91I	GGTNACC	1 cut(s)	382
EcoO65I	GGTNACC	1 cut(s)	382
EcoRII	CCWGG	1 cut(s)	766
EcoT14I	CCWWGG	1 cut(s)	905
EcoT22I	ATGCAT	2 cut(s)	419, 762
ErhI	CCWWGG	1 cut(s)	905
Esp3I	CGTCTC	1 cut(s)	258
FaeI	CATG	3 cut(s)	417, 764, 923
FaqI	GGGAC	1 cut(s)	509
FatI	CATG	3 cut(s)	413, 760, 919
FauI	CCCGC	1 cut(s)	620
FauNDI	CATATG	1 cut(s)	353
FblI	GTMKAC	1 cut(s)	861
Fnu4HI	GCNGC	6 cut(s)	349, 718, 741, 744, 747, 895
FokI	GGATG	1 cut(s)	36
Fsp4HI	GCNGC	6 cut(s)	349, 718, 741, 744, 747, 895
FspBI	CTAG	4 cut(s)	521, 831, 900, 906
GlaI	GCGC	1 cut(s)	898
GluI	GCNGC	6 cut(s)	349, 718, 741, 744, 747, 895
HaeII	RGCGCY	1 cut(s)	900
HaeIII	GGCC	2 cut(s)	396, 412
HapII	CCGG	2 cut(s)	377, 688
HhaI	GCGC	1 cut(s)	899
Hin1II	CATG	3 cut(s)	417, 764, 923
Hin6I	GCGC	1 cut(s)	897
HinP1I	GCGC	1 cut(s)	897
HincII	GTYRAC	1 cut(s)	634
HindII	GTYRAC	1 cut(s)	634
HindIII	AAGCTT	1 cut(s)	113
HinfI	GANTC	6 cut(s)	292, 314, 362, 430, 442, 512
HpaII	CCGG	2 cut(s)	377, 688
HphI	GGTGA	5 cut(s)	394, 677, 782, 827, 922
Hpy166II	GTNNAC	3 cut(s)	370, 634, 862
Hpy188I	TCNGA	6 cut(s)	304, 313, 319, 454, 511, 798
Hpy188III	TCNNGA	2 cut(s)	183, 439
Hpy8I	GTNNAC	3 cut(s)	370, 634, 862
Hpy99I	CGWCG	1 cut(s)	802
HpyAV	CCTTC	2 cut(s)	145, 909
HpyCH4III	ACNGT	2 cut(s)	483, 802
HpyCH4V	TGCA	8 cut(s)	26, 348, 370, 417, 495, 740, 760, 928
HpyF10VI	GCNNNNNNNGC	8 cut(s)	112, 354, 414, 492, 562, 746, 896, 925
HpyF3I	CTNAG	4 cut(s)	310, 358, 672, 713
Hsp92II	CATG	3 cut(s)	417, 764, 923
HspAI	GCGC	1 cut(s)	897
Kzo9I	GATC	1 cut(s)	373
LmnI	GCTCC	2 cut(s)	586, 625
Lsp1109I	GCAGC	6 cut(s)	360, 729, 730, 733, 752, 906
LweI	GCATC	2 cut(s)	226, 747
MaeI	CTAG	4 cut(s)	521, 831, 900, 906
MaeIII	GTNAC	3 cut(s)	335, 382, 842
MalI	GATC	1 cut(s)	375
MboI	GATC	1 cut(s)	373
MboII	GAAGA	4 cut(s)	61, 68, 245, 441
MhlI	GDGCHC	2 cut(s)	372, 488
MlsI	TGGCCA	2 cut(s)	396, 412
MluCI	AATT	2 cut(s)	874, 990
MluNI	TGGCCA	2 cut(s)	396, 412
MlyI	GAGTC	3 cut(s)	323, 356, 436
MmeI	TCCRAC	2 cut(s)	276, 821
MnlI	CCTC	6 cut(s)	48, 96, 298, 526, 624, 722
Mox20I	TGGCCA	2 cut(s)	396, 412
Mph1103I	ATGCAT	2 cut(s)	419, 762
MscI	TGGCCA	2 cut(s)	396, 412
MseI	TTAA	4 cut(s)	173, 207, 693, 791
MslI	CAYNNNNRTG	1 cut(s)	209
Msp20I	TGGCCA	2 cut(s)	396, 412
MspA1I	CMGCKG	1 cut(s)	743
MspI	CCGG	2 cut(s)	377, 688
MspR9I	CCNGG	1 cut(s)	768
MvaI	CCWGG	1 cut(s)	768
MwoI	GCNNNNNNNGC	8 cut(s)	112, 354, 414, 492, 562, 746, 896, 925
NdeI	CATATG	1 cut(s)	353
NdeII	GATC	1 cut(s)	373
NlaIII	CATG	3 cut(s)	417, 764, 923
NlaIV	GGNNCC	1 cut(s)	582
NmuCI	GTSAC	1 cut(s)	382
NsiI	ATGCAT	2 cut(s)	419, 762
NspI	RCATGY	1 cut(s)	923
PfeI	GAWTC	3 cut(s)	292, 430, 512
PflFI	GACNNNGTC	1 cut(s)	445
PflMI	CCANNNNNTGG	1 cut(s)	533
PkrI	GCNGC	6 cut(s)	350, 719, 742, 745, 748, 896
PleI	GAGTC	3 cut(s)	322, 356, 436
PpsI	GAGTC	3 cut(s)	322, 356, 436
PshBI	ATTAAT	1 cut(s)	693
Psp6I	CCWGG	1 cut(s)	766
PspEI	GGTNACC	1 cut(s)	382
PspGI	CCWGG	1 cut(s)	766
PspN4I	GGNNCC	1 cut(s)	582
PspPI	GGNCC	2 cut(s)	244, 764
PsrI	GAACNNNNNNTAC	2 cut(s)	637, 669
PstI	CTGCAG	1 cut(s)	350
PstNI	CAGNNNCTG	2 cut(s)	317, 746
PsyI	GACNNNGTC	1 cut(s)	445
PvuII	CAGCTG	1 cut(s)	743
RsaI	GTAC	1 cut(s)	655
RsaNI	GTAC	1 cut(s)	654
RseI	CAYNNNNRTG	1 cut(s)	209
SaqAI	TTAA	4 cut(s)	173, 207, 693, 791
SatI	GCNGC	6 cut(s)	349, 718, 741, 744, 747, 895
Sau3AI	GATC	1 cut(s)	373
Sau96I	GGNCC	2 cut(s)	244, 764
SchI	GAGTC	3 cut(s)	323, 356, 436
ScrFI	CCNGG	1 cut(s)	768
SduI	GDGCHC	2 cut(s)	372, 488
SetI	ASST	7 cut(s)	117, 125, 309, 616, 733, 745, 888
SfaNI	GCATC	2 cut(s)	226, 747
SfcI	CTRYAG	1 cut(s)	346
SinI	GGWCC	2 cut(s)	244, 764
SmiMI	CAYNNNNRTG	1 cut(s)	209
SmlI	CTYRAG	3 cut(s)	80, 181, 723
SmoI	CTYRAG	3 cut(s)	80, 181, 723
Sse9I	AATT	2 cut(s)	874, 990
SsiI	CCGC	3 cut(s)	104, 239, 627
SspI	AATATT	1 cut(s)	589
SspMI	CTAG	4 cut(s)	521, 831, 900, 906
StyD4I	CCNGG	1 cut(s)	766
StyI	CCWWGG	1 cut(s)	905
TaaI	ACNGT	2 cut(s)	483, 802
TaqI	TCGA	1 cut(s)	848
TasI	AATT	2 cut(s)	874, 990
TfiI	GAWTC	3 cut(s)	292, 430, 512
Tru1I	TTAA	4 cut(s)	173, 207, 693, 791
Tru9I	TTAA	4 cut(s)	173, 207, 693, 791
TscAI	CASTG	1 cut(s)	488
TseFI	GTSAC	1 cut(s)	382
TseI	GCWGC	6 cut(s)	348, 717, 740, 743, 746, 894
Tsp45I	GTSAC	1 cut(s)	382
TspDTI	ATGAA	1 cut(s)	267
TspGWI	ACGGA	3 cut(s)	54, 435, 681
TspRI	CASTG	1 cut(s)	488
Tth111I	GACNNNGTC	1 cut(s)	445
Van91I	CCANNNNNTGG	1 cut(s)	533
VneI	GTGCAC	1 cut(s)	368
VpaK11BI	GGWCC	2 cut(s)	244, 764
VspI	ATTAAT	1 cut(s)	693
XceI	RCATGY	1 cut(s)	923
XmaJI	CCTAGG	1 cut(s)	905
XmiI	GTMKAC	1 cut(s)	861
XspI	CTAG	4 cut(s)	521, 831, 900, 906
Zsp2I	ATGCAT	2 cut(s)	419, 762

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.