Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008226

Physical Location & Seq

Genomic Coordinates Reverse (-)

27661800 .. 27664457

Gene Structure 2658 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0262700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2658 bp

ATGGAGTTTGCCAGCAGCATTGCAGATGACGTCTTGGGTAGGCTAGCTTCACATGCTTCCCAACAGATCTCCTTGGCATGGGGTGCCCAACTTAAGCTCAGCAAGCTCAACAACACCTTATCTGCCATCAAACTAGTGCTCGAGGATGCAGAGAAGAAGCAAGTGAGAAATCCCCTAATCACTCGTTGGTTAGGAAATCTCAAAGATGTTTGTCATGACGTTGATGATGTCTTGGACGAACTGGACTTCCAAAAGTTGCAGTTGAAAGTGGAGGTCGACAACTGTGGGAAGATCAAAGGAAAGGTACGCCAATTTTTTTCCCGATGGAATACAGTAGTGTTTAACTTCAAAATGGGACATAAAGTGAAAGAGATTAGAGAAAGACTAGTTGAAATTGATAATGAACACAGACAGTTTGCTCTCCTTGAGTTTGCTAAGATAGCTGAAGATCCTCGTGCACCCCATCAAGTGCACGATGACAGGAGGATGACTACCTCTAAAGTTGAGGCTTCAAATGTTATTGGAAGAGATGATGATAAAAAACAGATTATCAAGCATCTCTTGAATGACACTGATTTCTCCAGTGAGGAGAATGTTTCTGTTGTTTCCATAATTGGGTTAGGAGGGTTGGGGAAAACAACACTTGCTAAATTGGTGTACAATGATAGCATGGTAGAAGAAAATTTTGAGACAAAGATGTGGATATGCGTCTCAGACAACTTTGATATTCAAACATTAATTCGAGGTATTACTAATGCTGCAAATGGACCAAAATGTGAGGATGAAAGTTTGGATCTTATGGAAAGAAAATTGCAAGATACTCTTAGAGGTAAAAAAATTTTATTGGTGTTGGACAATATTTGGGATACAGAGTCGATTGGAGTAACAATTGAAAAATGGATTGATTTAAAAACTTTGTTAAATGTGGGAGCTAATGGAAGCAAAATCATTATAACAACAAGAAATAAATCAGTCGCTTTACTTGTGAGTCCCTTATACATGCATTCTTTAAAAAGTCTTTCCCACAAAGATTGCATGTCCTTGTTCATCCAAAGGGCATTTAAAAAAGGAGAGGAGCAGCGCTATCAACATTTGATAGAAATTGGAGAGGATATTGTGAAGAAGTGTGGTGGTGTTCCTTTAGCGGTAACTACTGTAGGGAGCATGCTCTATTTGAATAGAGAGCAACACCATTGGTTGCGTGTCAGAGATGATGACATGTGGAGTATAGGGAATGACAATATTCTACCTGCACTCAAATTGAGCTATGATGCATTGCCACAACACTTGAAACCGTGTTTTGCATTTTGTTCACTTTTCCCAAAGGATTATGAATTCGACAGTGGCTTCTTGGTTCCATTGTGGATAGCACAAGGATACCTCAAAACATGTAAGAAAAATGAAGATTTTGAACATATGGGTATAGAGTATATAAGACAGTTTTGCTCTAGATCTTTGTTTCAAGTTGAGATAGATGTCAAAACATTTATAAGTTTTAAAATACATGATCTAGTTCATGATTTAGCAATTTCAGTGGCACAAGTAGAGTACTCCACAATCAATTTCCGTCCCTCTAGTGCTTTGGAAATGGTTCGACATGTGTCAATATCCAAAAAAGACTTGCTTAGAGAAGAGGCAGTTCCCTATTTCATGCTCAAGTCAAAGAAATTGCGAACCATTCTAGTTCTTGAAGATGCCCAGATAGATCAATGTTTTGTGAAAACATGCATCTCGAGATTTAAATATATGCGGGTGCTAAATCTCTGGGGGTCGCCTCTAGAGGAGCTACCAAGTTCTATTGGTAGTTTGTTTCATTTGAGATTCCTCAACTTGTCTGGTAATAGTGAGATAAAAAGGCTTCCCAATTCCATCAGTAAGCTGCTGAATTTGGAGACCTTGCACCTTCACAAGTGCGACGCACTTGAGGAGATACCCAAAGACATAGGCAACCTGATCAACCTACGAAGCTTGACGATAACAACGCAACAGACGTATTTGCCCAAAGGAATTAGACGCCTCACCTTACTTCAATCTTTACATTTTCATGGATGTGTCAATCTTGAATCTTTGGGCGAAGAGATCCAATTCCTCAACAACCTTCGCACTTTGTGGATTAGCAGGTGTAATAATTTGGAATCCTTGCCACCAAATATGAAACATATGACCGCTTTAGATACTTTGCTTATCGATGATTGCGAGAAGCTTCAGGTGATGATGAGATCAGGGAAAGGTCCCCAACGTCTTCGATCATTGATTATCGCGGATTCAAGTTTGGAGGCTTTGCCCCCTTGGCTCATTGAACATTCTGCAGACACTCTACAGAGCATATATCTTTCTGAATGTCATAATCTCACGGCACTTCCGGAGTTGATGAACTTCAGATTCCTCGAGCAACTACACACTGAAAAATGCTCCAAATTGTCGGCTTTGCCGCAAGGGTTGCATTGCCTTACTGAGTTGAGAGAACTGAACATTGAAGACTGTCCTGAATTGAGCAAAAGCTGCAAAAGGCAATTAAAAGGTGAGGAGTGGTCAAAGATGGCACGTCAGGTGAAGATTACACTCGACGCTGATGATGAAGAAGATGAAGCCGACAATCGCTTGGCCGACGGTAGGATCGCGTACCTCACAACGCGCCACCCGCGACGACGGCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009611 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010243 GO:0010498 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031984 GO:0032446 GO:0032527 GO:0032991 GO:0033036 GO:0033554 GO:0034613 GO:0034976 GO:0035966 GO:0035967 GO:0036211 GO:0036503 GO:0036513 GO:0042175 GO:0042221 GO:0042886 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050896 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0051788 GO:0070647 GO:0070727 GO:0070887 GO:0071218 GO:0071310 GO:0071702 GO:0071704 GO:0071705 GO:0071712 GO:0098796 GO:0098827 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

zf-C3HC4 zf-C3HC4_2 zf-RING_UBOX

Protein Analysis

885

Amino Acids

101.41

Weight (kDa)

6.65

Isoelectric Point (pI)

43.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rx_N	PF18052	11 - 93	1.1e-18	Rx N-terminal domain
NB-ARC	PF00931	177 - 356	2.3e-30	NB-ARC domain
WHD_DRP	PF23559	439 - 509	1e-19	Disease resistance protein Winged helix domain
LRR_14	PF23598	575 - 776	5.2e-26	Leucine-rich repeat region
LRR_RPS2	PF23247	597 - 733	6e-06	Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_R13L1-DRL21	PF25019	745 - 804	4.1e-07	R13L1/DRL21 LRRs

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0008226)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03510 AT4G03510 AT4G03510 AT4G03510
fragaria_vesca	FvH4_6g26170
malus_domestica	MD09G1248700.v1.1 MD17G1241200.v1.1
prunus_persica	Prupe.3G137000_v2.0.a1
pyrus_communis	pycom09g16560 pycom17g24430 pycom17g24440 pycom17g24450
rosa_chinensis	RchiOBHm_Chr2g0126321
rosa_laevigata	RLG00000018901
rosa_multiflora	Rmu_ssc0000264.1_g000040
rosa_roxburghii	Rroxscaffold_2G00117240
rosa_rugosa	Rorug02G0262600 Rorug02G0262700
rosa_samantha	Rh2AG319500 Rh2BG327900 Rh2CG307800 Rh2DG347600
rosa_wichuraiana	Rw2G025890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	953, 1490
AarI	CACCTGC	1 cut(s)	2109
AatII	GACGTC	1 cut(s)	33
Acc36I	ACCTGC	2 cut(s)	1258, 2109
AccB1I	GGYRCC	1 cut(s)	83
AccI	GTMKAC	1 cut(s)	276
AccII	CGCG	4 cut(s)	2261, 2621, 2635, 2644
AccIII	TCCGGA	1 cut(s)	2362
AciI	CCGC	6 cut(s)	1145, 1750, 2166, 2261, 2432, 2642
AclWI	GGATC	4 cut(s)	443, 801, 2074, 2624
AcoI	YGGCCR	1 cut(s)	2604
AcsI	RAATTY	4 cut(s)	682, 837, 1334, 1885
AcuI	CTGAAG	3 cut(s)	465, 2189, 2362
AcyI	GRCGYC	2 cut(s)	30, 2014
AdeI	CACNNNGTG	1 cut(s)	2109
AfaI	GTAC	4 cut(s)	306, 659, 1550, 2624
AfeI	AGCGCT	1 cut(s)	1082
AfiI	CCNNNNNNNGG	3 cut(s)	78, 615, 2613
AflII	CTTAAG	1 cut(s)	92
AflIII	ACRYGT	3 cut(s)	1218, 1388, 1597
AhlI	ACTAGT	2 cut(s)	133, 385
AjiI	CACGTC	1 cut(s)	2546
AloI	GAACNNNNNNTCC	2 cut(s)	231, 263
Alw21I	GWGCWC	3 cut(s)	141, 460, 474
Alw26I	GTCTC	3 cut(s)	683, 715, 1886
Alw44I	GTGCAC	2 cut(s)	456, 470
AlwI	GGATC	4 cut(s)	443, 801, 2074, 2624
Ama87I	CYCGRG	3 cut(s)	140, 1732, 2387
Aor13HI	TCCGGA	1 cut(s)	2362
Aor51HI	AGCGCT	1 cut(s)	1082
AoxI	GGCC	1 cut(s)	2604
ApaLI	GTGCAC	2 cut(s)	456, 470
ApeKI	GCWGC	5 cut(s)	15, 758, 1078, 1879, 2502
ApoI	RAATTY	4 cut(s)	682, 837, 1334, 1885
AseI	ATTAAT	1 cut(s)	737
Asp700I	GAANNNNTTC	1 cut(s)	1590
AspLEI	GCGC	2 cut(s)	1083, 2637
AspS9I	GGNCC	2 cut(s)	767, 2231
AsuHPI	GGTGA	4 cut(s)	2011, 2221, 2534, 2563
AsuNHI	GCTAGC	1 cut(s)	43
AvaI	CYCGRG	3 cut(s)	140, 1732, 2387
AvaII	GGWCC	2 cut(s)	767, 2231
BaeGI	GKGCMC	3 cut(s)	88, 460, 474
BanI	GGYRCC	1 cut(s)	83
BarI	GAAGNNNNNNTAC	2 cut(s)	31, 63
BauI	CACGAG	1 cut(s)	453
BbsI	GAAGAC	2 cut(s)	2234, 2484
Bbv12I	GWGCWC	3 cut(s)	141, 460, 474
BbvI	GCAGC	5 cut(s)	27, 745, 1090, 1866, 2489
BccI	CCATC	5 cut(s)	134, 318, 471, 1877, 2533
BceAI	ACGGC	1 cut(s)	2370
BciVI	GTATCC	2 cut(s)	859, 1370
BclI	TGATCA	1 cut(s)	1953
BcoDI	GTCTC	3 cut(s)	683, 715, 1886
BcuI	ACTAGT	2 cut(s)	133, 385
BfaI	CTAG	8 cut(s)	44, 134, 386, 1449, 1511, 1575, 1682, 1778
BfmI	CTRYAG	3 cut(s)	1155, 2307, 2318
BfoI	RGCGCY	1 cut(s)	1084
BfrI	CTTAAG	1 cut(s)	92
BfuAI	ACCTGC	2 cut(s)	1258, 2109
BfuI	GTATCC	2 cut(s)	859, 1370
BglI	GCCNNNNNGGC	1 cut(s)	2290
BglII	AGATCT	2 cut(s)	66, 1451
BisI	GCNGC	6 cut(s)	16, 759, 1079, 1880, 2432, 2503
BlpI	GCTNAGC	1 cut(s)	98
BlsI	GCNGC	6 cut(s)	17, 760, 1080, 1881, 2433, 2504
BmcAI	AGTACT	1 cut(s)	1550
Bme18I	GGWCC	2 cut(s)	767, 2231
BmeT110I	CYCGRG	3 cut(s)	140, 1732, 2387
BmgBI	CACGTC	1 cut(s)	2546
BmgT120I	GGNCC	2 cut(s)	767, 2231
BmiI	GGNNCC	3 cut(s)	85, 1356, 2233
BmsI	GCATC	5 cut(s)	136, 565, 1261, 1684, 1737
BmtI	GCTAGC	1 cut(s)	47
BoxI	GACNNNNGTC	1 cut(s)	1600
BpiI	GAAGAC	2 cut(s)	2234, 2484
BpmI	CTGGAG	1 cut(s)	565
Bpu1102I	GCTNAGC	1 cut(s)	98
BpuEI	CTTGAG	3 cut(s)	446, 1640, 1943
Bsa29I	ATCGAT	1 cut(s)	2187
BsaHI	GRCGYC	2 cut(s)	30, 2014
BsaI	GGTCTC	1 cut(s)	1886
BsaJI	CCNNGG	2 cut(s)	72, 2288
BsaWI	WCCGGW	1 cut(s)	2362
Bsc4I	CCNNNNNNNGG	3 cut(s)	78, 615, 2613
Bse1I	ACTGG	2 cut(s)	246, 582
Bse3DI	GCAATG	3 cut(s)	18, 1274, 2443
BseAI	TCCGGA	1 cut(s)	2362
BseCI	ATCGAT	1 cut(s)	2187
BseDI	CCNNGG	2 cut(s)	72, 2288
BseGI	GGATG	5 cut(s)	151, 492, 787, 1047, 2054
BseLI	CCNNNNNNNGG	3 cut(s)	78, 615, 2613
BseMI	GCAATG	3 cut(s)	18, 1274, 2443
BseMII	CTCAG	3 cut(s)	112, 726, 2445
BseNI	ACTGG	2 cut(s)	246, 582
BseRI	GAGGAG	5 cut(s)	602, 1088, 1796, 1940, 2540
BseSI	GKGCMC	3 cut(s)	88, 460, 474
BseXI	GCAGC	5 cut(s)	27, 745, 1090, 1866, 2489
BsgI	GTGCAG	1 cut(s)	1236
Bsh1236I	CGCG	4 cut(s)	2261, 2621, 2635, 2644
BshFI	GGCC	1 cut(s)	2606
BshNI	GGYRCC	1 cut(s)	83
BshVI	ATCGAT	1 cut(s)	2187
BsiHKAI	GWGCWC	3 cut(s)	141, 460, 474
BsiHKCI	CYCGRG	3 cut(s)	140, 1732, 2387
BsiSI	CCGG	1 cut(s)	2363
BslFI	GGGAC	4 cut(s)	369, 975, 1554, 2217
BslI	CCNNNNNNNGG	3 cut(s)	78, 615, 2613
BsmAI	GTCTC	3 cut(s)	683, 715, 1886
BsmBI	CGTCTC	1 cut(s)	715
BsmFI	GGGAC	4 cut(s)	369, 975, 1554, 2217
BsmI	GAATGC	1 cut(s)	1003
BsnI	GGCC	1 cut(s)	2606
Bso31I	GGTCTC	1 cut(s)	1886
BsoBI	CYCGRG	3 cut(s)	140, 1732, 2387
Bsp1286I	GDGCHC	4 cut(s)	88, 141, 460, 474
Bsp13I	TCCGGA	1 cut(s)	2362
Bsp1407I	TGTACA	1 cut(s)	657
Bsp1720I	GCTNAGC	1 cut(s)	98
BspACI	CCGC	6 cut(s)	1145, 1750, 2166, 2261, 2432, 2642
BspANI	GGCC	1 cut(s)	2606
BspCNI	CTCAG	3 cut(s)	111, 725, 2446
BspDI	ATCGAT	1 cut(s)	2187
BspEI	TCCGGA	1 cut(s)	2362
BspFNI	CGCG	4 cut(s)	2261, 2621, 2635, 2644
BspHI	TCATGA	2 cut(s)	214, 1516
BspLI	GGNNCC	3 cut(s)	85, 1356, 2233
BspMAI	CTGCAG	1 cut(s)	2311
BspMI	ACCTGC	2 cut(s)	1258, 2109
BspOI	GCTAGC	1 cut(s)	47
BspPI	GGATC	4 cut(s)	443, 801, 2074, 2624
BspT107I	GGYRCC	1 cut(s)	83
BspTI	CTTAAG	1 cut(s)	92
BspTNI	GGTCTC	1 cut(s)	1886
BsrDI	GCAATG	3 cut(s)	18, 1274, 2443
BsrGI	TGTACA	1 cut(s)	657
BsrI	ACTGG	2 cut(s)	246, 582
BssECI	CCNNGG	2 cut(s)	72, 2288
BssNI	GRCGYC	2 cut(s)	30, 2014
BssSI	CACGAG	1 cut(s)	453
BssT1I	CCWWGG	2 cut(s)	72, 2288
Bst2BI	CACGAG	1 cut(s)	453
Bst4CI	ACNGT	9 cut(s)	284, 334, 414, 1156, 1296, 1343, 1440, 2483, 2612
Bst6I	CTCTTC	3 cut(s)	520, 1626, 2070
BstACI	GRCGYC	2 cut(s)	30, 2014
BstAFI	CTTAAG	1 cut(s)	92
BstAPI	GCANNNNNTGC	3 cut(s)	83, 2440, 2502
BstAUI	TGTACA	1 cut(s)	657
BstC8I	GCNNGC	4 cut(s)	13, 45, 104, 1166
BstDEI	CTNAG	6 cut(s)	98, 435, 712, 824, 1625, 2454
BstF5I	GGATG	5 cut(s)	151, 492, 787, 1047, 2054
BstFNI	CGCG	4 cut(s)	2261, 2621, 2635, 2644
BstH2I	RGCGCY	1 cut(s)	1084
BstHHI	GCGC	2 cut(s)	1083, 2637
BstMAI	GTCTC	3 cut(s)	683, 715, 1886
BstMWI	GCNNNNNNNGC	9 cut(s)	53, 83, 103, 440, 2290, 2440, 2502, 2641, 2650
BstNSI	RCATGY	8 cut(s)	56, 1003, 1039, 1168, 1222, 1392, 1601, 1728
BstPAI	GACNNNNGTC	1 cut(s)	1600
BstSFI	CTRYAG	3 cut(s)	1155, 2307, 2318
BstSLI	GKGCMC	3 cut(s)	88, 460, 474
BstUI	CGCG	4 cut(s)	2261, 2621, 2635, 2644
BstV1I	GCAGC	5 cut(s)	27, 745, 1090, 1866, 2489
BstV2I	GAAGAC	2 cut(s)	2234, 2484
BstX2I	RGATCY	5 cut(s)	66, 448, 793, 1451, 2079
BstYI	RGATCY	5 cut(s)	66, 448, 793, 1451, 2079
Bsu15I	ATCGAT	1 cut(s)	2187
BsuI	GTATCC	2 cut(s)	859, 1370
BsuRI	GGCC	1 cut(s)	2606
BsuTUI	ATCGAT	1 cut(s)	2187
BtrI	CACGTC	1 cut(s)	2546
BtsCI	GGATG	5 cut(s)	151, 492, 787, 1047, 2054
BtsIMutI	CAGTG	5 cut(s)	570, 589, 1348, 1539, 2400
BveI	ACCTGC	2 cut(s)	1258, 2109
Cac8I	GCNNGC	4 cut(s)	13, 45, 104, 1166
CciI	TCATGA	2 cut(s)	214, 1516
CfoI	GCGC	2 cut(s)	1083, 2637
Cfr13I	GGNCC	2 cut(s)	767, 2231
ClaI	ATCGAT	1 cut(s)	2187
CseI	GACGC	4 cut(s)	697, 1925, 2022, 2576
Csp6I	GTAC	4 cut(s)	305, 658, 1549, 2623
CspCI	CAANNNNNGTGG	6 cut(s)	1013, 1048, 1269, 1304, 1515, 1550
CviQI	GTAC	4 cut(s)	305, 658, 1549, 2623
DdeI	CTNAG	6 cut(s)	98, 435, 712, 824, 1625, 2454
DraI	TTTAAA	5 cut(s)	909, 1011, 1063, 1498, 1741
DraIII	CACNNNGTG	1 cut(s)	2109
EaeI	YGGCCR	1 cut(s)	2604
Eam1104I	CTCTTC	3 cut(s)	520, 1626, 2070
EarI	CTCTTC	3 cut(s)	520, 1626, 2070
Eco130I	CCWWGG	2 cut(s)	72, 2288
Eco31I	GGTCTC	1 cut(s)	1886
Eco47I	GGWCC	2 cut(s)	767, 2231
Eco47III	AGCGCT	1 cut(s)	1082
Eco57I	CTGAAG	3 cut(s)	465, 2189, 2362
Eco88I	CYCGRG	3 cut(s)	140, 1732, 2387
EcoO109I	RGGNCCY	1 cut(s)	2231
EcoRI	GAATTC	1 cut(s)	1334
EcoT14I	CCWWGG	2 cut(s)	72, 2288
EcoT22I	ATGCAT	3 cut(s)	1005, 1276, 1730
ErhI	CCWWGG	2 cut(s)	72, 2288
Esp3I	CGTCTC	1 cut(s)	715
FalI	AAGNNNNNCTT	6 cut(s)	545, 577, 807, 839, 1608, 1640
FaqI	GGGAC	4 cut(s)	369, 975, 1554, 2217
FauI	CCCGC	2 cut(s)	1743, 2649
FauNDI	CATATG	2 cut(s)	1416, 2160
FbaI	TGATCA	1 cut(s)	1953
FblI	GTMKAC	1 cut(s)	276
Fnu4HI	GCNGC	6 cut(s)	16, 759, 1079, 1880, 2432, 2503
FokI	GGATG	5 cut(s)	158, 499, 794, 1034, 2061
Fsp4HI	GCNGC	6 cut(s)	16, 759, 1079, 1880, 2432, 2503
FspBI	CTAG	8 cut(s)	44, 134, 386, 1449, 1511, 1575, 1682, 1778
GlaI	GCGC	2 cut(s)	1082, 2636
GluI	GCNGC	6 cut(s)	16, 759, 1079, 1880, 2432, 2503
GsuI	CTGGAG	1 cut(s)	565
HaeII	RGCGCY	1 cut(s)	1084
HaeIII	GGCC	1 cut(s)	2606
HapII	CCGG	1 cut(s)	2363
HgaI	GACGC	4 cut(s)	697, 1925, 2022, 2576
HhaI	GCGC	2 cut(s)	1083, 2637
Hin1I	GRCGYC	2 cut(s)	30, 2014
Hin6I	GCGC	2 cut(s)	1081, 2635
HinP1I	GCGC	2 cut(s)	1081, 2635
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
HindIII	AAGCTT	2 cut(s)	1966, 2201
HinfI	GANTC	7 cut(s)	872, 988, 1821, 2063, 2135, 2264, 2382
HpaII	CCGG	1 cut(s)	2363
HphI	GGTGA	4 cut(s)	2011, 2221, 2534, 2563
Hpy166II	GTNNAC	5 cut(s)	277, 458, 472, 658, 1313
Hpy188I	TCNGA	4 cut(s)	715, 1208, 2338, 2381
Hpy8I	GTNNAC	5 cut(s)	277, 458, 472, 658, 1313
Hpy99I	CGWCG	5 cut(s)	1919, 2570, 2612, 2649, 2652
HpyAV	CCTTC	2 cut(s)	1913, 2108
HpyCH4III	ACNGT	9 cut(s)	284, 334, 414, 1156, 1296, 1343, 1440, 2483, 2612
HpyCH4IV	ACGT	5 cut(s)	30, 219, 1991, 2239, 2545
HpyF10VI	GCNNNNNNNGC	9 cut(s)	53, 83, 103, 440, 2290, 2440, 2502, 2641, 2650
HpyF3I	CTNAG	6 cut(s)	98, 435, 712, 824, 1625, 2454
HpySE526I	ACGT	5 cut(s)	30, 219, 1991, 2239, 2545
Hsp92I	GRCGYC	2 cut(s)	30, 2014
HspAI	GCGC	2 cut(s)	1081, 2635
Kpn2I	TCCGGA	1 cut(s)	2362
Ksp22I	TGATCA	1 cut(s)	1953
LmnI	GCTCC	5 cut(s)	929, 1075, 1161, 1783, 2417
Lsp1109I	GCAGC	5 cut(s)	27, 745, 1090, 1866, 2489
LweI	GCATC	5 cut(s)	136, 565, 1261, 1684, 1737
MaeI	CTAG	8 cut(s)	44, 134, 386, 1449, 1511, 1575, 1682, 1778
MaeII	ACGT	5 cut(s)	30, 219, 1991, 2239, 2545
MaeIII	GTNAC	2 cut(s)	883, 1147
MfeI	CAATTG	1 cut(s)	888
MflI	RGATCY	5 cut(s)	66, 448, 793, 1451, 2079
MhlI	GDGCHC	4 cut(s)	88, 141, 460, 474
MlyI	GAGTC	2 cut(s)	881, 997
MmeI	TCCRAC	1 cut(s)	831
Mph1103I	ATGCAT	3 cut(s)	1005, 1276, 1730
MroI	TCCGGA	1 cut(s)	2362
MroXI	GAANNNNTTC	1 cut(s)	1590
MslI	CAYNNNNRTG	2 cut(s)	2043, 2049
MspCI	CTTAAG	1 cut(s)	92
MspI	CCGG	1 cut(s)	2363
MunI	CAATTG	1 cut(s)	888
Mva1269I	GAATGC	1 cut(s)	1003
MvnI	CGCG	4 cut(s)	2261, 2621, 2635, 2644
MwoI	GCNNNNNNNGC	9 cut(s)	53, 83, 103, 440, 2290, 2440, 2502, 2641, 2650
NdeI	CATATG	2 cut(s)	1416, 2160
NheI	GCTAGC	1 cut(s)	43
NlaIV	GGNNCC	3 cut(s)	85, 1356, 2233
NsiI	ATGCAT	3 cut(s)	1005, 1276, 1730
NspI	RCATGY	8 cut(s)	56, 1003, 1039, 1168, 1222, 1392, 1601, 1728
PaeI	GCATGC	1 cut(s)	1168
PaeR7I	CTCGAG	3 cut(s)	140, 1732, 2387
PagI	TCATGA	2 cut(s)	214, 1516
PaqCI	CACCTGC	1 cut(s)	2109
PciI	ACATGT	3 cut(s)	1218, 1388, 1597
PcsI	WCGNNNNNNNCGW	2 cut(s)	1988, 2193
PctI	GAATGC	1 cut(s)	1003
PdmI	GAANNNNTTC	1 cut(s)	1590
PfeI	GAWTC	5 cut(s)	1821, 2063, 2135, 2264, 2382
PkrI	GCNGC	6 cut(s)	17, 760, 1080, 1881, 2433, 2504
PleI	GAGTC	2 cut(s)	880, 996
PpsI	GAGTC	2 cut(s)	880, 996
PpuMI	RGGWCCY	1 cut(s)	2231
PscI	ACATGT	3 cut(s)	1218, 1388, 1597
PshAI	GACNNNNGTC	1 cut(s)	1600
PshBI	ATTAAT	1 cut(s)	737
PsiI	TTATAA	2 cut(s)	953, 1490
Psp5II	RGGWCCY	1 cut(s)	2231
PspN4I	GGNNCC	3 cut(s)	85, 1356, 2233
PspPI	GGNCC	2 cut(s)	767, 2231
PspPPI	RGGWCCY	1 cut(s)	2231
PspXI	VCTCGAGB	2 cut(s)	140, 2387
PstI	CTGCAG	1 cut(s)	2311
PsuI	RGATCY	5 cut(s)	66, 448, 793, 1451, 2079
RsaI	GTAC	4 cut(s)	306, 659, 1550, 2624
RsaNI	GTAC	4 cut(s)	305, 658, 1549, 2623
RseI	CAYNNNNRTG	2 cut(s)	2043, 2049
SalI	GTCGAC	1 cut(s)	275
SatI	GCNGC	6 cut(s)	16, 759, 1079, 1880, 2432, 2503
Sau96I	GGNCC	2 cut(s)	767, 2231
ScaI	AGTACT	1 cut(s)	1550
SchI	GAGTC	2 cut(s)	881, 997
SduI	GDGCHC	4 cut(s)	88, 141, 460, 474
SfaNI	GCATC	5 cut(s)	136, 565, 1261, 1684, 1737
SfcI	CTRYAG	3 cut(s)	1155, 2307, 2318
Sfr274I	CTCGAG	3 cut(s)	140, 1732, 2387
SinI	GGWCC	2 cut(s)	767, 2231
SlaI	CTCGAG	3 cut(s)	140, 1732, 2387
SmiI	ATTTAAAT	1 cut(s)	1741
SmiMI	CAYNNNNRTG	2 cut(s)	2043, 2049
SmlI	CTYRAG	7 cut(s)	92, 140, 425, 1655, 1732, 1922, 2387
SmoI	CTYRAG	7 cut(s)	92, 140, 425, 1655, 1732, 1922, 2387
SpeI	ACTAGT	2 cut(s)	133, 385
SphI	GCATGC	1 cut(s)	1168
SsiI	CCGC	6 cut(s)	1145, 1750, 2166, 2261, 2432, 2642
SspI	AATATT	2 cut(s)	859, 1243
SspMI	CTAG	8 cut(s)	44, 134, 386, 1449, 1511, 1575, 1682, 1778
StyI	CCWWGG	2 cut(s)	72, 2288
SwaI	ATTTAAAT	1 cut(s)	1741
TaaI	ACNGT	9 cut(s)	284, 334, 414, 1156, 1296, 1343, 1440, 2483, 2612
TaiI	ACGT	5 cut(s)	33, 222, 1994, 2242, 2548
TatI	WGTACW	2 cut(s)	657, 1548
TauI	GCSGC	1 cut(s)	2434
TfiI	GAWTC	5 cut(s)	1821, 2063, 2135, 2264, 2382
TscAI	CASTG	5 cut(s)	577, 589, 1348, 1539, 2407
TseI	GCWGC	5 cut(s)	15, 758, 1078, 1879, 2502
TspGWI	ACGGA	1 cut(s)	1556
TspRI	CASTG	5 cut(s)	577, 589, 1348, 1539, 2407
Vha464I	CTTAAG	1 cut(s)	92
VneI	GTGCAC	2 cut(s)	456, 470
VpaK11BI	GGWCC	2 cut(s)	767, 2231
VspI	ATTAAT	1 cut(s)	737
XapI	RAATTY	4 cut(s)	682, 837, 1334, 1885
XbaI	TCTAGA	2 cut(s)	1448, 1777
XceI	RCATGY	8 cut(s)	56, 1003, 1039, 1168, 1222, 1392, 1601, 1728
XhoI	CTCGAG	3 cut(s)	140, 1732, 2387
XmiI	GTMKAC	1 cut(s)	276
XmnI	GAANNNNTTC	1 cut(s)	1590
XspI	CTAG	8 cut(s)	44, 134, 386, 1449, 1511, 1575, 1682, 1778
ZraI	GACGTC	1 cut(s)	31
ZrmI	AGTACT	1 cut(s)	1550
Zsp2I	ATGCAT	3 cut(s)	1005, 1276, 1730

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.