Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0008226

Physical Location & Seq

Genomic Coordinates Forward (+)

22766258 .. 22766452

Gene Structure 195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g24440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGTTTGGTGAAATGGTATATGCAAGGGTTTTTGGCAACTCTTTAGCAAACTTTTATACTTATTCGAATTCATATAATCTCGCGGGGAGCGGTAGTCCGAGGGTTAGAAGGCATGTAATGCAGGCTGATAAGTCGCTCAGCAGAATATGTTTTTTTCTCTTCTGTTGCTTTATGTTATGCCTCCTTTTGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009611 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010243 GO:0010498 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031984 GO:0032446 GO:0032527 GO:0032991 GO:0033036 GO:0033554 GO:0034613 GO:0034976 GO:0035966 GO:0035967 GO:0036211 GO:0036503 GO:0036513 GO:0042175 GO:0042221 GO:0042886 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050896 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0051788 GO:0070647 GO:0070727 GO:0070887 GO:0071218 GO:0071310 GO:0071702 GO:0071704 GO:0071705 GO:0071712 GO:0098796 GO:0098827 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

zf-C3HC4 zf-C3HC4_2 zf-RING_UBOX

Protein Analysis

65

Amino Acids

7.4

Weight (kDa)

9.16

Isoelectric Point (pI)

31.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008226)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03510 AT4G03510 AT4G03510 AT4G03510
fragaria_vesca	FvH4_6g26170
malus_domestica	MD09G1248700.v1.1 MD17G1241200.v1.1
prunus_persica	Prupe.3G137000_v2.0.a1
pyrus_communis	pycom09g16560 pycom17g24430 pycom17g24440 pycom17g24450
rosa_chinensis	RchiOBHm_Chr2g0126321
rosa_laevigata	RLG00000018901
rosa_multiflora	Rmu_ssc0000264.1_g000040
rosa_roxburghii	Rroxscaffold_2G00117240
rosa_rugosa	Rorug02G0262600 Rorug02G0262700
rosa_samantha	Rh2AG319500 Rh2BG327900 Rh2CG307800 Rh2DG347600
rosa_wichuraiana	Rw2G025890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	90
AccII	CGCG	1 cut(s)	83
AciI	CCGC	2 cut(s)	83, 90
AcsI	RAATTY	1 cut(s)	67
ApoI	RAATTY	1 cut(s)	67
AsuHPI	GGTGA	1 cut(s)	20
AsuII	TTCGAA	1 cut(s)	65
BlpI	GCTNAGC	1 cut(s)	137
Bpu1102I	GCTNAGC	1 cut(s)	137
Bpu14I	TTCGAA	1 cut(s)	65
BsaJI	CCNNGG	1 cut(s)	98
BsaXI	ACNNNNNCTCC	2 cut(s)	79, 109
BseDI	CCNNGG	1 cut(s)	98
BseMII	CTCAG	1 cut(s)	151
Bsh1236I	CGCG	1 cut(s)	83
Bsp119I	TTCGAA	1 cut(s)	65
Bsp1720I	GCTNAGC	1 cut(s)	137
BspACI	CCGC	2 cut(s)	83, 90
BspCNI	CTCAG	1 cut(s)	150
BspFNI	CGCG	1 cut(s)	83
BspT104I	TTCGAA	1 cut(s)	65
BsrBI	CCGCTC	1 cut(s)	90
BssECI	CCNNGG	1 cut(s)	98
Bst6I	CTCTTC	1 cut(s)	164
BstAPI	GCANNNNNTGC	1 cut(s)	118
BstBI	TTCGAA	1 cut(s)	65
BstC8I	GCNNGC	1 cut(s)	123
BstDEI	CTNAG	1 cut(s)	137
BstFNI	CGCG	1 cut(s)	83
BstMWI	GCNNNNNNNGC	1 cut(s)	118
BstNSI	RCATGY	1 cut(s)	116
BstUI	CGCG	1 cut(s)	83
Cac8I	GCNNGC	1 cut(s)	123
CviAII	CATG	1 cut(s)	113
CviJI	RGCY	1 cut(s)	125
CviKI_1	RGCY	1 cut(s)	125
DdeI	CTNAG	1 cut(s)	137
Eam1104I	CTCTTC	1 cut(s)	164
EarI	CTCTTC	1 cut(s)	164
EcoRI	GAATTC	1 cut(s)	67
FaeI	CATG	1 cut(s)	116
FaiI	YATR	9 cut(s)	19, 21, 57, 73, 75, 114, 148, 173, 178
FatI	CATG	1 cut(s)	112
FauI	CCCGC	1 cut(s)	76
Hin1II	CATG	1 cut(s)	116
HphI	GGTGA	1 cut(s)	20
Hpy188I	TCNGA	2 cut(s)	99, 194
HpyAV	CCTTC	1 cut(s)	102
HpyCH4V	TGCA	2 cut(s)	23, 121
HpyF10VI	GCNNNNNNNGC	1 cut(s)	118
HpyF3I	CTNAG	1 cut(s)	137
Hsp92II	CATG	1 cut(s)	116
LmnI	GCTCC	1 cut(s)	87
LpnPI	CCDG	1 cut(s)	107
MbiI	CCGCTC	1 cut(s)	90
MboII	GAAGA	1 cut(s)	151
MluCI	AATT	1 cut(s)	67
MnlI	CCTC	2 cut(s)	93, 191
MvnI	CGCG	1 cut(s)	83
MwoI	GCNNNNNNNGC	1 cut(s)	118
NlaIII	CATG	1 cut(s)	116
NspI	RCATGY	1 cut(s)	116
NspV	TTCGAA	1 cut(s)	65
SfuI	TTCGAA	1 cut(s)	65
SgeI	CNNG	7 cut(s)	36, 92, 94, 96, 111, 125, 134
Sse9I	AATT	1 cut(s)	67
SsiI	CCGC	2 cut(s)	83, 90
TaqI	TCGA	1 cut(s)	65
TasI	AATT	1 cut(s)	67
TspDTI	ATGAA	1 cut(s)	60
XapI	RAATTY	1 cut(s)	67
XceI	RCATGY	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.