Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004288

Physical Location & Seq

Genomic Coordinates Forward (+)

1889360 .. 1890412

Gene Structure 1053 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G03965.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGAGTCAACTCGGTGTTGAAACTAGTCAAGCCCAGCCGGAGACGCCACAGTCAACGACATTTCTCGATTTGCTCCGACTCCAAATGGACGGTCTCGATCGAAGTAGGAGAAGGAAACGAACTCTTAAAGAACGGCTAGGATTCAAACGAATTGGATGCTGTGGACCAACTTGGGGTCTCCGGTTAACAAGTAACACTGGCGAAGACGACGACGAGCCATTTGAAAACCGGCTTGTTTCCGGGTCGGATCATGTAACGGGTCCGTTAAATCAAGGTATGAATCTCGCAACGGCGTTAGCAGCGGAGAGAAATTACCGAACGGAGGAAACGGAAGCATCAGGGAGTTTAACGCCGTTAAAAGTGTCGTTAATGAGATTGCTCGAAGAAACGGCGGAGAGAGTCGTCGTTGAAGAGAATGAAACGGAGAGAGTAACGGCGTCGGCGTCGTCGACGGTTAGAGGAGTTAATAATGATTCGGTGTGTTGCGTGTGCATGGGAAGGAAGAAAGGAGCAGCGTTTATCCCATGTGGACATACTTTTTGCAGAGTGTGTTCTCGAGAGGTGTGGCTTAATCGAGGATCGTGTCCTCTTTGTAACCGTCCGATCATCGAGATCCTCGACATTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

209

Amino Acids

23.2

Weight (kDa)

6.2

Isoelectric Point (pI)

47.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	158 - 204	9.2e-12	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	161 - 198	1.2e-06	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	161 - 198	1.3e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25030 AT3G25030 AT3G25030 AT3G25030 AT4G03965 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G22250
fragaria_vesca	FvH4_2g18810
malus_domestica	MD05G1174100.v1.1 MD10G1163000.v1.1
prunus_persica	Prupe.8G201500_v2.0.a1 Prupe.8G201500_v2.0.a1
pyrus_communis	pycom05g16090
rosa_chinensis	RchiOBHm_Chr6g0284561
rosa_laevigata	RLG00000012738
rosa_multiflora	Rmu_sc0001246.1_g000002 Rmu_sc0001246.1_g000003 Rmu_sc0005257.1_g000005
rosa_roxburghii	Rroxscaffold_7G00184620
rosa_rugosa	Rorug06G0164200
rosa_samantha	Rh6BG277300 Rh6CG279500 Rh6DG271900
rosa_wichuraiana	Rw6G023820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	49
AccI	GTMKAC	1 cut(s)	449
AciI	CCGC	2 cut(s)	302, 392
AclWI	GGATC	3 cut(s)	255, 586, 607
AcyI	GRCGYC	3 cut(s)	44, 437, 443
AfiI	CCNNNNNNNGG	2 cut(s)	173, 322
AgsI	TTSAA	4 cut(s)	20, 145, 224, 410
AhlI	ACTAGT	1 cut(s)	23
Alw26I	GTCTC	3 cut(s)	35, 98, 182
AlwI	GGATC	3 cut(s)	255, 586, 607
Ama87I	CYCGRG	1 cut(s)	555
ApeKI	GCWGC	2 cut(s)	299, 512
ArsI	GACNNNNNNTTYG	6 cut(s)	76, 108, 203, 235, 522, 554
AspS9I	GGNCC	2 cut(s)	164, 260
AsuC2I	CCSGG	1 cut(s)	241
AvaI	CYCGRG	1 cut(s)	555
AvaII	GGWCC	2 cut(s)	164, 260
BbsI	GAAGAC	1 cut(s)	210
BbvI	GCAGC	2 cut(s)	311, 524
BceAI	ACGGC	5 cut(s)	149, 306, 337, 405, 450
BcgI	CGANNNNNNTGC	2 cut(s)	138, 172
BcnI	CCSGG	1 cut(s)	241
BcoDI	GTCTC	3 cut(s)	35, 98, 182
BcuI	ACTAGT	1 cut(s)	23
BfaI	CTAG	2 cut(s)	24, 137
BisI	GCNGC	2 cut(s)	300, 513
BlsI	GCNGC	2 cut(s)	301, 514
Bme1390I	CCNGG	1 cut(s)	241
Bme18I	GGWCC	2 cut(s)	164, 260
BmeT110I	CYCGRG	1 cut(s)	555
BmgT120I	GGNCC	2 cut(s)	164, 260
BmiI	GGNNCC	1 cut(s)	261
BmrFI	CCNGG	1 cut(s)	241
BmsI	GCATC	2 cut(s)	146, 344
BpiI	GAAGAC	1 cut(s)	210
BpuMI	CCSGG	1 cut(s)	241
BsaHI	GRCGYC	3 cut(s)	44, 437, 443
BsaI	GGTCTC	2 cut(s)	98, 182
BsaWI	WCCGGW	1 cut(s)	180
Bsc4I	CCNNNNNNNGG	2 cut(s)	173, 322
Bse118I	RCCGGY	1 cut(s)	228
Bse1I	ACTGG	1 cut(s)	202
BseGI	GGATG	1 cut(s)	161
BseLI	CCNNNNNNNGG	2 cut(s)	173, 322
BseNI	ACTGG	1 cut(s)	202
BseRI	GAGGAG	1 cut(s)	474
BseXI	GCAGC	2 cut(s)	311, 524
BseYI	CCCAGC	1 cut(s)	33
Bsh1285I	CGRYCG	1 cut(s)	100
BsiEI	CGRYCG	1 cut(s)	100
BsiHKCI	CYCGRG	1 cut(s)	555
BsiSI	CCGG	4 cut(s)	38, 181, 229, 240
BslI	CCNNNNNNNGG	2 cut(s)	173, 322
BsmAI	GTCTC	3 cut(s)	35, 98, 182
BsmBI	CGTCTC	1 cut(s)	35
Bso31I	GGTCTC	2 cut(s)	98, 182
BsoBI	CYCGRG	1 cut(s)	555
Bsp143I	GATC	5 cut(s)	97, 247, 578, 603, 612
BspACI	CCGC	2 cut(s)	302, 392
BspLI	GGNNCC	1 cut(s)	261
BspPI	GGATC	3 cut(s)	255, 586, 607
BspTNI	GGTCTC	2 cut(s)	98, 182
BsrFI	RCCGGY	1 cut(s)	228
BsrI	ACTGG	1 cut(s)	202
BssAI	RCCGGY	1 cut(s)	228
BssMI	GATC	5 cut(s)	97, 247, 578, 603, 612
BssNI	GRCGYC	3 cut(s)	44, 437, 443
Bst4CI	ACNGT	4 cut(s)	51, 92, 454, 599
Bst6I	CTCTTC	1 cut(s)	405
BstACI	GRCGYC	3 cut(s)	44, 437, 443
BstF5I	GGATG	1 cut(s)	161
BstKTI	GATC	5 cut(s)	100, 250, 581, 606, 615
BstMAI	GTCTC	3 cut(s)	35, 98, 182
BstMBI	GATC	5 cut(s)	97, 247, 578, 603, 612
BstMCI	CGRYCG	1 cut(s)	100
BstMWI	GCNNNNNNNGC	2 cut(s)	43, 299
BstSCI	CCNGG	1 cut(s)	239
BstV1I	GCAGC	2 cut(s)	311, 524
BstV2I	GAAGAC	1 cut(s)	210
BstX2I	RGATCY	1 cut(s)	612
BstYI	RGATCY	1 cut(s)	612
BtsCI	GGATG	1 cut(s)	161
BtsIMutI	CAGTG	1 cut(s)	195
Cfr10I	RCCGGY	1 cut(s)	228
Cfr13I	GGNCC	2 cut(s)	164, 260
CseI	GACGC	3 cut(s)	52, 426, 432
CviAII	CATG	3 cut(s)	251, 493, 525
CviJI	RGCY	6 cut(s)	32, 37, 136, 217, 232, 568
CviKI_1	RGCY	6 cut(s)	32, 37, 136, 217, 232, 568
DpnI	GATC	5 cut(s)	99, 249, 580, 605, 614
DpnII	GATC	5 cut(s)	97, 247, 578, 603, 612
DrdI	GACNNNNNNGTC	1 cut(s)	49
DseDI	GACNNNNNNGTC	1 cut(s)	49
Eam1104I	CTCTTC	1 cut(s)	405
EarI	CTCTTC	1 cut(s)	405
EciI	GGCGGA	1 cut(s)	407
Eco31I	GGTCTC	2 cut(s)	98, 182
Eco47I	GGWCC	2 cut(s)	164, 260
Eco88I	CYCGRG	1 cut(s)	555
Esp3I	CGTCTC	1 cut(s)	35
FaeI	CATG	3 cut(s)	254, 496, 528
FaiI	YATR	5 cut(s)	252, 278, 494, 526, 534
FatI	CATG	3 cut(s)	250, 492, 524
FblI	GTMKAC	1 cut(s)	449
Fnu4HI	GCNGC	2 cut(s)	300, 513
FokI	GGATG	1 cut(s)	168
Fsp4HI	GCNGC	2 cut(s)	300, 513
FspBI	CTAG	2 cut(s)	24, 137
GluI	GCNGC	2 cut(s)	300, 513
GsaI	CCCAGC	1 cut(s)	37
HapII	CCGG	4 cut(s)	38, 181, 229, 240
HgaI	GACGC	3 cut(s)	52, 426, 432
Hin1I	GRCGYC	3 cut(s)	44, 437, 443
Hin1II	CATG	3 cut(s)	254, 496, 528
HincII	GTYRAC	4 cut(s)	8, 54, 186, 450
HindII	GTYRAC	4 cut(s)	8, 54, 186, 450
HinfI	GANTC	6 cut(s)	4, 78, 141, 280, 399, 473
HpaI	GTTAAC	1 cut(s)	186
HpaII	CCGG	4 cut(s)	38, 181, 229, 240
Hpy166II	GTNNAC	6 cut(s)	8, 54, 164, 186, 450, 530
Hpy188I	TCNGA	3 cut(s)	77, 247, 603
Hpy188III	TCNNGA	5 cut(s)	65, 95, 555, 557, 610
Hpy8I	GTNNAC	6 cut(s)	8, 54, 164, 186, 450, 530
Hpy99I	CGWCG	7 cut(s)	212, 215, 407, 442, 448, 451, 454
HpyAV	CCTTC	2 cut(s)	105, 492
HpyCH4III	ACNGT	4 cut(s)	51, 92, 454, 599
HpyCH4V	TGCA	2 cut(s)	492, 543
HpyF10VI	GCNNNNNNNGC	2 cut(s)	43, 299
Hsp92I	GRCGYC	3 cut(s)	44, 437, 443
Hsp92II	CATG	3 cut(s)	254, 496, 528
KspAI	GTTAAC	1 cut(s)	186
Kzo9I	GATC	5 cut(s)	97, 247, 578, 603, 612
LmnI	GCTCC	2 cut(s)	78, 509
LpnPI	CCDG	7 cut(s)	47, 51, 183, 194, 242, 253, 324
Lsp1109I	GCAGC	2 cut(s)	311, 524
LweI	GCATC	2 cut(s)	146, 344
MaeI	CTAG	2 cut(s)	24, 137
MaeIII	GTNAC	4 cut(s)	191, 253, 430, 593
MalI	GATC	5 cut(s)	99, 249, 580, 605, 614
MboI	GATC	5 cut(s)	97, 247, 578, 603, 612
MboII	GAAGA	4 cut(s)	215, 395, 422, 514
MflI	RGATCY	1 cut(s)	612
MluCI	AATT	2 cut(s)	150, 310
MlyI	GAGTC	3 cut(s)	13, 72, 408
MmeI	TCCRAC	2 cut(s)	100, 225
MnlI	CCTC	6 cut(s)	316, 452, 553, 569, 597, 626
MseI	TTAA	8 cut(s)	126, 185, 266, 347, 356, 368, 465, 570
MspA1I	CMGCKG	1 cut(s)	302
MspI	CCGG	4 cut(s)	38, 181, 229, 240
MspR9I	CCNGG	1 cut(s)	241
MwoI	GCNNNNNNNGC	2 cut(s)	43, 299
NciI	CCSGG	1 cut(s)	241
NdeII	GATC	5 cut(s)	97, 247, 578, 603, 612
NlaIII	CATG	3 cut(s)	254, 496, 528
NlaIV	GGNNCC	1 cut(s)	261
PaeR7I	CTCGAG	1 cut(s)	555
PcsI	WCGNNNNNNNCGW	3 cut(s)	440, 446, 615
PfeI	GAWTC	3 cut(s)	141, 280, 473
PkrI	GCNGC	2 cut(s)	301, 514
Ple19I	CGATCG	1 cut(s)	100
PleI	GAGTC	3 cut(s)	12, 72, 407
PpsI	GAGTC	3 cut(s)	12, 72, 407
PspFI	CCCAGC	1 cut(s)	33
PspN4I	GGNNCC	1 cut(s)	261
PspPI	GGNCC	2 cut(s)	164, 260
PsuI	RGATCY	1 cut(s)	612
PvuI	CGATCG	1 cut(s)	100
SalI	GTCGAC	1 cut(s)	448
SaqAI	TTAA	8 cut(s)	126, 185, 266, 347, 356, 368, 465, 570
SatI	GCNGC	2 cut(s)	300, 513
Sau3AI	GATC	5 cut(s)	97, 247, 578, 603, 612
Sau96I	GGNCC	2 cut(s)	164, 260
SchI	GAGTC	3 cut(s)	13, 72, 408
ScrFI	CCNGG	1 cut(s)	241
SetI	ASST	2 cut(s)	277, 564
SfaNI	GCATC	2 cut(s)	146, 344
Sfr274I	CTCGAG	1 cut(s)	555
SgrDI	CGTCGACG	1 cut(s)	448
SinI	GGWCC	2 cut(s)	164, 260
SlaI	CTCGAG	1 cut(s)	555
SmlI	CTYRAG	1 cut(s)	555
SmoI	CTYRAG	1 cut(s)	555
SpeI	ACTAGT	1 cut(s)	23
Sse9I	AATT	2 cut(s)	150, 310
SsiI	CCGC	2 cut(s)	302, 392
SspMI	CTAG	2 cut(s)	24, 137
StyD4I	CCNGG	1 cut(s)	239
TaaI	ACNGT	4 cut(s)	51, 92, 454, 599
TaqI	TCGA	9 cut(s)	66, 96, 100, 381, 449, 556, 574, 609, 618
TasI	AATT	2 cut(s)	150, 310
TfiI	GAWTC	3 cut(s)	141, 280, 473
Tru1I	TTAA	8 cut(s)	126, 185, 266, 347, 356, 368, 465, 570
Tru9I	TTAA	8 cut(s)	126, 185, 266, 347, 356, 368, 465, 570
TscAI	CASTG	1 cut(s)	202
TseI	GCWGC	2 cut(s)	299, 512
TspDTI	ATGAA	2 cut(s)	293, 432
TspGWI	ACGGA	4 cut(s)	252, 335, 344, 437
TspRI	CASTG	1 cut(s)	202
VpaK11BI	GGWCC	2 cut(s)	164, 260
XhoI	CTCGAG	1 cut(s)	555
XmiI	GTMKAC	1 cut(s)	449
XspI	CTAG	2 cut(s)	24, 137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.