Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004288

Physical Location & Seq

Genomic Coordinates Reverse (-)

47757399 .. 47759783

Gene Structure 2385 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25519

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGTCAGCAAGTGCGGACGGCAGAGCATTAGCCGGACTGAGCCTCGAAGACGTCTTATCCCCAGCAGCAGCAGCAGCGCCCAAAGAACCCCCGCCGGCTCCGGTGATACCGGCGTCTATTTCGGGTCTGACCCTCCTTGACATTATCCGCAACGAGGAGCCCAAATCGTATAAGGCCTTGATCGGAAAGAAAGACAAGAAGCCGTGGAAGACGTTCAAAGACCGCCTCCGCCTCAAGAAAGCCAGCGCCGCCTGGGCCTCCAACGCCCAAGTCCCCACCTCCGACGTCCCCGTCCGGAACAACCACCACCACCGCCAGCCAGGCTACAGCCACAGCCGATCCCGCAACTCCATCCGTTACATCACGCCGGAGCCGCAGCCGATGGCTGAGCCCGGATCAAACGCCGACACCAGCAACCGACCTCCGCAGGCAGGCTCCGCGCCGAGTTTCAATCGGCGAAGCTCCGTGCGGTTCGCGTCGGACATCGAGTCGCCGCGGCCCAAGCTGGAGACGGCGATCAGCGAGGAGAGGTCGCTGTCGGCGAGGGAGGCGGTGGCGGCACAGGAGGCTGCCGAGGCCTCCGCCGCAGCAGCGGCGGCTGAGGCGGCAGCGGCGGAGGAGAAGGCAGAGAGAGAAGGAGAGGGAGACGGCTCATCTTCGTCGGAGAAGGCTTCCGGTGAAACGGTAACGTCGCCGGAGGCGGAGGCGGAGCCGGTGAGGATGTCGCTGATGGACTTGTTGGAGGAGACGGACAGGCAGATGGGGCTGGAGGGAGGGAGGTACACCATGGACGAAGAGGAAGAAGAGGAGGAGGAGGAGGAGGAGGAAGTGGAAGAGGTGGAGGAGGTGAAGGAGGTGGAAGAACCAGAAGAAGCTGGGGGAGTGGAGCACAGTTGCTGCGTGTGCATGGTGAGGCATAAAGGCGCGGCGTTTATCCCCTGCGGGCATACCTTTTGCCGGATGTGCTCCAGAGAGTTGTGGGTGCAGAGAGGGAACTGCCCCCTCTGCAACAATTTCATCTTGGAAATTCTGGACATTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

347

Amino Acids

37.66

Weight (kDa)

4.81

Isoelectric Point (pI)

65.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	296 - 340	7.6e-10	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	299 - 336	6e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25030 AT3G25030 AT3G25030 AT3G25030 AT4G03965 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G22250
fragaria_vesca	FvH4_2g18810
malus_domestica	MD05G1174100.v1.1 MD10G1163000.v1.1
prunus_persica	Prupe.8G201500_v2.0.a1 Prupe.8G201500_v2.0.a1
pyrus_communis	pycom05g16090
rosa_chinensis	RchiOBHm_Chr6g0284561
rosa_laevigata	RLG00000012738
rosa_multiflora	Rmu_sc0001246.1_g000002 Rmu_sc0001246.1_g000003 Rmu_sc0005257.1_g000005
rosa_roxburghii	Rroxscaffold_7G00184620
rosa_rugosa	Rorug06G0164200
rosa_samantha	Rh6BG277300 Rh6CG279500 Rh6DG271900
rosa_wichuraiana	Rw6G023820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	290
AatII	GACGTC	2 cut(s)	54, 288
AccII	CGCG	4 cut(s)	440, 476, 496, 926
AccIII	TCCGGA	1 cut(s)	294
AclWI	GGATC	2 cut(s)	333, 403
AcsI	RAATTY	1 cut(s)	1026
AcyI	GRCGYC	3 cut(s)	51, 113, 285
AfaI	GTAC	1 cut(s)	782
AfiI	CCNNNNNNNGG	3 cut(s)	154, 431, 957
AgsI	TTSAA	2 cut(s)	217, 451
AhdI	GACNNNNNGTC	1 cut(s)	487
AjnI	CCWGG	2 cut(s)	251, 319
AluBI	AGCT	3 cut(s)	462, 505, 875
AluI	AGCT	3 cut(s)	462, 505, 875
Alw21I	GWGCWC	2 cut(s)	891, 968
Alw26I	GTCTC	3 cut(s)	503, 639, 740
AlwI	GGATC	2 cut(s)	333, 403
AlwNI	CAGNNNCTG	1 cut(s)	897
Aor13HI	TCCGGA	1 cut(s)	294
AoxI	GGCC	4 cut(s)	174, 255, 497, 576
ApoI	RAATTY	1 cut(s)	1026
Asp700I	GAANNNNTTC	1 cut(s)	212
AspLEI	GCGC	4 cut(s)	79, 248, 442, 926
AspS9I	GGNCC	2 cut(s)	255, 498
AsuC2I	CCSGG	1 cut(s)	393
AsuHPI	GGTGA	5 cut(s)	115, 689, 727, 859, 922
BaeI	ACNNNNGTAYC	2 cut(s)	98, 131
BanII	GRGCYC	2 cut(s)	162, 393
BbsI	GAAGAC	2 cut(s)	54, 215
Bbv12I	GWGCWC	2 cut(s)	891, 968
BbvCI	CCTCAGC	1 cut(s)	600
BccI	CCATC	4 cut(s)	359, 376, 724, 754
BceAI	ACGGC	4 cut(s)	34, 187, 528, 664
BciT130I	CCWGG	2 cut(s)	253, 321
BcnI	CCSGG	1 cut(s)	393
BcoDI	GTCTC	3 cut(s)	503, 639, 740
BfmI	CTRYAG	1 cut(s)	325
BfoI	RGCGCY	2 cut(s)	80, 249
BglI	GCCNNNNNGGC	2 cut(s)	254, 321
BlpI	GCTNAGC	1 cut(s)	387
Bme1390I	CCNGG	3 cut(s)	253, 321, 393
BmeRI	GACNNNNNGTC	1 cut(s)	487
BmgT120I	GGNCC	2 cut(s)	255, 498
BmiI	GGNNCC	5 cut(s)	99, 159, 372, 436, 711
BmrFI	CCNGG	3 cut(s)	253, 321, 393
BpiI	GAAGAC	2 cut(s)	54, 215
BpmI	CTGGAG	3 cut(s)	527, 788, 952
Bpu10I	CCTNAGC	1 cut(s)	600
Bpu1102I	GCTNAGC	1 cut(s)	387
BpuEI	CTTGAG	1 cut(s)	218
BpuMI	CCSGG	1 cut(s)	393
BsaHI	GRCGYC	3 cut(s)	51, 113, 285
BsaJI	CCNNGG	5 cut(s)	203, 252, 494, 573, 786
BsaWI	WCCGGW	3 cut(s)	100, 294, 674
Bsc4I	CCNNNNNNNGG	3 cut(s)	154, 431, 957
Bse118I	RCCGGY	3 cut(s)	94, 109, 712
BseAI	TCCGGA	1 cut(s)	294
BseBI	CCWGG	2 cut(s)	253, 321
BseDI	CCNNGG	5 cut(s)	203, 252, 494, 573, 786
BseGI	GGATG	3 cut(s)	351, 726, 966
BseLI	CCNNNNNNNGG	3 cut(s)	154, 431, 957
BseMII	CTCAG	3 cut(s)	29, 378, 591
BseYI	CCCAGC	2 cut(s)	61, 875
BsgI	GTGCAG	1 cut(s)	1004
Bsh1236I	CGCG	4 cut(s)	440, 476, 496, 926
BshFI	GGCC	4 cut(s)	176, 257, 499, 578
BsiHKAI	GWGCWC	2 cut(s)	891, 968
BslFI	GGGAC	2 cut(s)	257, 272
BslI	CCNNNNNNNGG	3 cut(s)	154, 431, 957
BsmAI	GTCTC	3 cut(s)	503, 639, 740
BsmBI	CGTCTC	3 cut(s)	503, 639, 740
BsmFI	GGGAC	2 cut(s)	257, 272
BsnI	GGCC	4 cut(s)	176, 257, 499, 578
Bsp1286I	GDGCHC	4 cut(s)	162, 393, 891, 968
Bsp13I	TCCGGA	1 cut(s)	294
Bsp143I	GATC	4 cut(s)	180, 338, 395, 516
Bsp1720I	GCTNAGC	1 cut(s)	387
Bsp19I	CCATGG	1 cut(s)	786
BspANI	GGCC	4 cut(s)	176, 257, 499, 578
BspCNI	CTCAG	3 cut(s)	30, 379, 592
BspEI	TCCGGA	1 cut(s)	294
BspFNI	CGCG	4 cut(s)	440, 476, 496, 926
BspLI	GGNNCC	5 cut(s)	99, 159, 372, 436, 711
BspPI	GGATC	2 cut(s)	333, 403
BsrFI	RCCGGY	3 cut(s)	94, 109, 712
BssAI	RCCGGY	3 cut(s)	94, 109, 712
BssECI	CCNNGG	5 cut(s)	203, 252, 494, 573, 786
BssMI	GATC	4 cut(s)	180, 338, 395, 516
BssNI	GRCGYC	3 cut(s)	51, 113, 285
BssT1I	CCWWGG	1 cut(s)	786
Bst2UI	CCWGG	2 cut(s)	253, 321
Bst4CI	ACNGT	2 cut(s)	685, 893
Bst6I	CTCTTC	3 cut(s)	789, 798, 828
BstACI	GRCGYC	3 cut(s)	51, 113, 285
BstC8I	GCNNGC	6 cut(s)	96, 244, 317, 429, 433, 944
BstDEI	CTNAG	3 cut(s)	38, 387, 600
BstDSI	CCRYGG	3 cut(s)	203, 494, 786
BstF5I	GGATG	3 cut(s)	351, 726, 966
BstFNI	CGCG	4 cut(s)	440, 476, 496, 926
BstH2I	RGCGCY	2 cut(s)	80, 249
BstHHI	GCGC	4 cut(s)	79, 248, 442, 926
BstKTI	GATC	4 cut(s)	183, 341, 398, 519
BstMAI	GTCTC	3 cut(s)	503, 639, 740
BstMBI	GATC	4 cut(s)	180, 338, 395, 516
BstNI	CCWGG	2 cut(s)	253, 321
BstSCI	CCNGG	3 cut(s)	251, 319, 391
BstSFI	CTRYAG	1 cut(s)	325
BstUI	CGCG	4 cut(s)	440, 476, 496, 926
BstV2I	GAAGAC	2 cut(s)	54, 215
BsuRI	GGCC	4 cut(s)	176, 257, 499, 578
BtgI	CCRYGG	3 cut(s)	203, 494, 786
BtsCI	GGATG	3 cut(s)	351, 726, 966
Cac8I	GCNNGC	6 cut(s)	96, 244, 317, 429, 433, 944
CaiI	CAGNNNCTG	1 cut(s)	897
CfoI	GCGC	4 cut(s)	79, 248, 442, 926
Cfr10I	RCCGGY	3 cut(s)	94, 109, 712
Cfr13I	GGNCC	2 cut(s)	255, 498
Cfr42I	CCGCGG	1 cut(s)	497
CseI	GACGC	2 cut(s)	102, 465
Csp6I	GTAC	1 cut(s)	781
CviAII	CATG	2 cut(s)	787, 907
CviQI	GTAC	1 cut(s)	781
DdeI	CTNAG	3 cut(s)	38, 387, 600
DpnI	GATC	4 cut(s)	182, 340, 397, 518
DpnII	GATC	4 cut(s)	180, 338, 395, 516
DrdI	GACNNNNNNGTC	1 cut(s)	290
DriI	GACNNNNNGTC	1 cut(s)	487
DseDI	GACNNNNNNGTC	1 cut(s)	290
Eam1104I	CTCTTC	3 cut(s)	789, 798, 828
Eam1105I	GACNNNNNGTC	1 cut(s)	487
EarI	CTCTTC	3 cut(s)	789, 798, 828
EciI	GGCGGA	5 cut(s)	218, 571, 629, 716, 722
Eco130I	CCWWGG	1 cut(s)	786
Eco147I	AGGCCT	2 cut(s)	176, 578
Eco24I	GRGCYC	2 cut(s)	162, 393
EcoRII	CCWGG	2 cut(s)	251, 319
EcoT14I	CCWWGG	1 cut(s)	786
EcoT38I	GRGCYC	2 cut(s)	162, 393
ErhI	CCWWGG	1 cut(s)	786
Esp3I	CGTCTC	3 cut(s)	503, 639, 740
FaeI	CATG	2 cut(s)	790, 910
FaiI	YATR	5 cut(s)	171, 788, 908, 918, 948
FaqI	GGGAC	2 cut(s)	257, 272
FatI	CATG	2 cut(s)	786, 906
FauI	CCCGC	3 cut(s)	99, 350, 935
FokI	GGATG	3 cut(s)	338, 733, 973
FriOI	GRGCYC	2 cut(s)	162, 393
GlaI	GCGC	4 cut(s)	78, 247, 441, 925
GsaI	CCCAGC	2 cut(s)	65, 879
GsuI	CTGGAG	3 cut(s)	527, 788, 952
HaeII	RGCGCY	2 cut(s)	80, 249
HaeIII	GGCC	4 cut(s)	176, 257, 499, 578
HgaI	GACGC	2 cut(s)	102, 465
HhaI	GCGC	4 cut(s)	79, 248, 442, 926
Hin1I	GRCGYC	3 cut(s)	51, 113, 285
Hin1II	CATG	2 cut(s)	790, 910
Hin6I	GCGC	4 cut(s)	77, 246, 440, 924
HinP1I	GCGC	4 cut(s)	77, 246, 440, 924
HinfI	GANTC	1 cut(s)	488
HphI	GGTGA	5 cut(s)	115, 689, 727, 859, 922
Hpy166II	GTNNAC	1 cut(s)	783
Hpy188I	TCNGA	6 cut(s)	129, 185, 283, 481, 664, 1043
Hpy188III	TCNNGA	4 cut(s)	235, 295, 969, 1031
Hpy8I	GTNNAC	1 cut(s)	783
Hpy99I	CGWCG	4 cut(s)	287, 481, 664, 694
HpyAV	CCTTC	4 cut(s)	616, 629, 661, 844
HpyCH4III	ACNGT	2 cut(s)	685, 893
HpyCH4IV	ACGT	4 cut(s)	51, 212, 285, 689
HpyCH4V	TGCA	3 cut(s)	906, 985, 1008
HpyF3I	CTNAG	3 cut(s)	38, 387, 600
HpySE526I	ACGT	4 cut(s)	51, 212, 285, 689
Hsp92I	GRCGYC	3 cut(s)	51, 113, 285
Hsp92II	CATG	2 cut(s)	790, 910
HspAI	GCGC	4 cut(s)	77, 246, 440, 924
Kpn2I	TCCGGA	1 cut(s)	294
KroI	GCCGGC	1 cut(s)	94
KroNI	GCCGGC	1 cut(s)	96
KspI	CCGCGG	1 cut(s)	497
Kzo9I	GATC	4 cut(s)	180, 338, 395, 516
LmnI	GCTCC	8 cut(s)	103, 157, 370, 440, 467, 709, 886, 971
MaeII	ACGT	4 cut(s)	51, 212, 285, 689
MaeIII	GTNAC	2 cut(s)	356, 685
MalI	GATC	4 cut(s)	182, 340, 397, 518
MboI	GATC	4 cut(s)	180, 338, 395, 516
MboII	GAAGA	9 cut(s)	59, 220, 648, 806, 812, 815, 845, 872, 881
MhlI	GDGCHC	4 cut(s)	162, 393, 891, 968
MluCI	AATT	2 cut(s)	1012, 1026
MlyI	GAGTC	1 cut(s)	497
MmeI	TCCRAC	5 cut(s)	285, 306, 459, 642, 720
MroI	TCCGGA	1 cut(s)	294
MroNI	GCCGGC	1 cut(s)	94
MroXI	GAANNNNTTC	1 cut(s)	212
MspA1I	CMGCKG	3 cut(s)	496, 593, 611
MspR9I	CCNGG	3 cut(s)	253, 321, 393
MvaI	CCWGG	2 cut(s)	253, 321
MvnI	CGCG	4 cut(s)	440, 476, 496, 926
NaeI	GCCGGC	1 cut(s)	96
NciI	CCSGG	1 cut(s)	393
NcoI	CCATGG	1 cut(s)	786
NdeII	GATC	4 cut(s)	180, 338, 395, 516
NgoMIV	GCCGGC	1 cut(s)	94
NlaIII	CATG	2 cut(s)	790, 910
NlaIV	GGNNCC	5 cut(s)	99, 159, 372, 436, 711
NmeAIII	GCCGAG	2 cut(s)	468, 598
PceI	AGGCCT	2 cut(s)	176, 578
PcsI	WCGNNNNNNNCGW	1 cut(s)	539
PdiI	GCCGGC	1 cut(s)	96
PdmI	GAANNNNTTC	1 cut(s)	212
PleI	GAGTC	1 cut(s)	496
PpsI	GAGTC	1 cut(s)	496
Psp6I	CCWGG	2 cut(s)	251, 319
PspFI	CCCAGC	2 cut(s)	61, 875
PspGI	CCWGG	2 cut(s)	251, 319
PspN4I	GGNNCC	5 cut(s)	99, 159, 372, 436, 711
PspPI	GGNCC	2 cut(s)	255, 498
PstNI	CAGNNNCTG	1 cut(s)	897
RsaI	GTAC	1 cut(s)	782
RsaNI	GTAC	1 cut(s)	781
SacII	CCGCGG	1 cut(s)	497
Sau3AI	GATC	4 cut(s)	180, 338, 395, 516
Sau96I	GGNCC	2 cut(s)	255, 498
SchI	GAGTC	1 cut(s)	497
ScrFI	CCNGG	3 cut(s)	253, 321, 393
SduI	GDGCHC	4 cut(s)	162, 393, 891, 968
SfcI	CTRYAG	1 cut(s)	325
Sfr303I	CCGCGG	1 cut(s)	497
SgrBI	CCGCGG	1 cut(s)	497
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
Sse9I	AATT	2 cut(s)	1012, 1026
SseBI	AGGCCT	2 cut(s)	176, 578
StuI	AGGCCT	2 cut(s)	176, 578
StyD4I	CCNGG	3 cut(s)	251, 319, 391
StyI	CCWWGG	1 cut(s)	786
TaaI	ACNGT	2 cut(s)	685, 893
TaiI	ACGT	4 cut(s)	54, 215, 288, 692
TaqI	TCGA	2 cut(s)	45, 486
TasI	AATT	2 cut(s)	1012, 1026
TspDTI	ATGAA	1 cut(s)	1006
TspGWI	ACGGA	3 cut(s)	344, 454, 764
XapI	RAATTY	1 cut(s)	1026
XmnI	GAANNNNTTC	1 cut(s)	212
ZraI	GACGTC	2 cut(s)	52, 286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.