Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0004288

Physical Location & Seq

Genomic Coordinates Reverse (-)

19467166 .. 19468286

Gene Structure 1121 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g16090.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGAAGGTCGCCGGAGGCTAACGCTTCTCGATCAGATGTCAGCAAGTAGCAACGGGAGAGACTTAGCCGGATTGAGCCTACACGACGTGTTGCTGGCCCCTGCAGCCGCCAAACAGCCCCCTCCACCGCCCACACTTCCCGCCATAATCTCGGGTCGGACCCTACTCGATATAATCCGCGACGAGGAGCCCAAGTCCTACCGGGCCCTGATTGGCAAGAAGGATAAGAAAGCCTGGAAGTCGTTCAAAGACCGCCTCCTACTCAAACGCGCCGGCTCCGCCTGGACCTCCTCCGTCCGTGTCCCCACCTCTGATCTCCCTATCCGGAATACTGCTAACTACGGTTCCAATCACAACCACCACCCGCGATCTCGCAACTCGCGTCGCAGCTCGGTCCGTTACGTCACTCCGGAGTGCGATCTCGACATGACTCAGCAGGTCGAGAGGCAGATTTCGCGGCGGGGCTCCACCCGGTTCAGCCCCAACCCCTCGATTCCGTCCGACGAGGTGGATATGAACAACCCCCACGCCTCGATGTTCTCGCGCCAGGGCTCTGTGCGGTTCACGGCCGACGAGGTCGCGGCGGACTCTCCAAGACGGCGATTGTCGGCGGCGCTGGACGAGGAGAGATCGCTGTCGGCGAGGGAAGCTGTGGCGGCGCAAGAGGCTTCCGAAGCTGCGGCGGCGGCATTGGCTGCGGAAGAAGAGACGGGAAATGACGTGTCGTCGGGAGAGACGGGTGCGGCGGAGCCGGTGAGGATGTCGTTGATGGACTTATTGGAGGAGACGGACAGGCAGATGGGGGTGGAGTCGAGGTACACGATGGACGAGGATGAGGAGGTGTACGAGGAAGAAGAGGAGGAGGAGGTGGAGGTGGCGGCGGAAGAAGGGAATGTGGAGTATAACTGCTGCGTGTGCATGGATGTGCTCCCGAGAGCTGTGGGTCCAGCGGGGCAATTGCCCCCTCTGCAACAATTTCATCTTGGAAATTCTCGATATTTTCTGAACCAGAAAAAAGTAGAAGTAAAAGAAAAGTCACTGCAAGTTTCAACTTTTAATTGGAGTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

357

Amino Acids

39.53

Weight (kDa)

5.2

Isoelectric Point (pI)

59.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25030 AT3G25030 AT3G25030 AT3G25030 AT4G03965 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G22250
fragaria_vesca	FvH4_2g18810
malus_domestica	MD05G1174100.v1.1 MD10G1163000.v1.1
prunus_persica	Prupe.8G201500_v2.0.a1 Prupe.8G201500_v2.0.a1
pyrus_communis	pycom05g16090
rosa_chinensis	RchiOBHm_Chr6g0284561
rosa_laevigata	RLG00000012738
rosa_multiflora	Rmu_sc0001246.1_g000002 Rmu_sc0001246.1_g000003 Rmu_sc0005257.1_g000005
rosa_roxburghii	Rroxscaffold_7G00184620
rosa_rugosa	Rorug06G0164200
rosa_samantha	Rh6BG277300 Rh6CG279500 Rh6DG271900
rosa_wichuraiana	Rw6G023820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	427
AccII	CGCG	7 cut(s)	180, 270, 367, 382, 457, 544, 581
AccIII	TCCGGA	2 cut(s)	324, 409
AcoI	YGGCCR	1 cut(s)	567
AcsI	RAATTY	1 cut(s)	988
AdeI	CACNNNGTG	1 cut(s)	88
AfaI	GTAC	2 cut(s)	818, 845
AfiI	CCNNNNNNNGG	1 cut(s)	184
AflIII	ACRYGT	2 cut(s)	87, 720
AgsI	TTSAA	2 cut(s)	247, 1050
AhdI	GACNNNNNGTC	1 cut(s)	724
AjiI	CACGTC	2 cut(s)	88, 721
AjnI	CCWGG	3 cut(s)	233, 281, 546
AluBI	AGCT	4 cut(s)	390, 650, 677, 938
AluI	AGCT	4 cut(s)	390, 650, 677, 938
Alw21I	GWGCWC	1 cut(s)	930
Alw26I	GTCTC	4 cut(s)	54, 701, 728, 779
Ama87I	CYCGRG	2 cut(s)	151, 931
Aor13HI	TCCGGA	2 cut(s)	324, 409
AoxI	GGCC	3 cut(s)	96, 204, 567
ApaI	GGGCCC	1 cut(s)	208
ApeKI	GCWGC	5 cut(s)	104, 387, 677, 695, 909
ApoI	RAATTY	1 cut(s)	988
Asp700I	GAANNNNTTC	1 cut(s)	242
AspLEI	GCGC	4 cut(s)	272, 546, 616, 661
AspS9I	GGNCC	7 cut(s)	97, 159, 204, 205, 285, 394, 944
AsuC2I	CCSGG	2 cut(s)	203, 472
AsuHPI	GGTGA	1 cut(s)	766
AvaI	CYCGRG	2 cut(s)	151, 931
AvaII	GGWCC	4 cut(s)	159, 285, 394, 944
BaeGI	GKGCMC	1 cut(s)	208
BanII	GRGCYC	4 cut(s)	192, 208, 467, 554
Bbv12I	GWGCWC	1 cut(s)	930
BbvI	GCAGC	5 cut(s)	116, 399, 664, 682, 896
BccI	CCATC	3 cut(s)	763, 793, 817
BceAI	ACGGC	2 cut(s)	582, 614
BciT130I	CCWGG	3 cut(s)	235, 283, 548
BcnI	CCSGG	2 cut(s)	203, 472
BcoDI	GTCTC	4 cut(s)	54, 701, 728, 779
BfmI	CTRYAG	1 cut(s)	102
BfoI	RGCGCY	1 cut(s)	617
BfuAI	ACCTGC	1 cut(s)	427
Bme1390I	CCNGG	5 cut(s)	203, 235, 283, 472, 548
Bme18I	GGWCC	4 cut(s)	159, 285, 394, 944
BmeRI	GACNNNNNGTC	1 cut(s)	724
BmeT110I	CYCGRG	2 cut(s)	151, 931
BmgBI	CACGTC	2 cut(s)	88, 721
BmgT120I	GGNCC	7 cut(s)	97, 159, 204, 205, 285, 394, 944
BmiI	GGNNCC	9 cut(s)	99, 161, 189, 206, 277, 346, 466, 750, 945
BmrFI	CCNGG	5 cut(s)	203, 235, 283, 472, 548
BpuMI	CCSGG	2 cut(s)	203, 472
BsaJI	CCNNGG	1 cut(s)	547
BsaWI	WCCGGW	2 cut(s)	324, 409
BsaXI	ACNNNNNCTCC	4 cut(s)	179, 209, 800, 830
Bsc4I	CCNNNNNNNGG	1 cut(s)	184
Bse118I	RCCGGY	2 cut(s)	272, 751
BseAI	TCCGGA	2 cut(s)	324, 409
BseBI	CCWGG	3 cut(s)	235, 283, 548
BseDI	CCNNGG	1 cut(s)	547
BseGI	GGATG	3 cut(s)	765, 838, 928
BseLI	CCNNNNNNNGG	1 cut(s)	184
BseMII	CTCAG	1 cut(s)	446
BseRI	GAGGAG	8 cut(s)	200, 280, 638, 797, 851, 872, 875, 878
BseSI	GKGCMC	1 cut(s)	208
BseX3I	CGGCCG	1 cut(s)	567
BseXI	GCAGC	5 cut(s)	116, 399, 664, 682, 896
Bsh1236I	CGCG	7 cut(s)	180, 270, 367, 382, 457, 544, 581
Bsh1285I	CGRYCG	1 cut(s)	570
BshFI	GGCC	3 cut(s)	98, 206, 569
BsiEI	CGRYCG	1 cut(s)	570
BsiHKAI	GWGCWC	1 cut(s)	930
BsiHKCI	CYCGRG	2 cut(s)	151, 931
BsiSI	CCGG	8 cut(s)	13, 69, 202, 273, 325, 410, 472, 752
BslFI	GGGAC	1 cut(s)	287
BslI	CCNNNNNNNGG	1 cut(s)	184
BsmAI	GTCTC	4 cut(s)	54, 701, 728, 779
BsmBI	CGTCTC	3 cut(s)	701, 728, 779
BsmFI	GGGAC	1 cut(s)	287
BsnI	GGCC	3 cut(s)	98, 206, 569
BsoBI	CYCGRG	2 cut(s)	151, 931
Bsp120I	GGGCCC	1 cut(s)	204
Bsp1286I	GDGCHC	5 cut(s)	192, 208, 467, 554, 930
Bsp13I	TCCGGA	2 cut(s)	324, 409
Bsp143I	GATC	5 cut(s)	31, 313, 368, 418, 629
BspANI	GGCC	3 cut(s)	98, 206, 569
BspCNI	CTCAG	1 cut(s)	445
BspEI	TCCGGA	2 cut(s)	324, 409
BspFNI	CGCG	7 cut(s)	180, 270, 367, 382, 457, 544, 581
BspLI	GGNNCC	9 cut(s)	99, 161, 189, 206, 277, 346, 466, 750, 945
BspMAI	CTGCAG	1 cut(s)	106
BspMI	ACCTGC	1 cut(s)	427
BsrFI	RCCGGY	2 cut(s)	272, 751
BssAI	RCCGGY	2 cut(s)	272, 751
BssECI	CCNNGG	1 cut(s)	547
BssMI	GATC	5 cut(s)	31, 313, 368, 418, 629
Bst2UI	CCWGG	3 cut(s)	235, 283, 548
Bst4CI	ACNGT	1 cut(s)	344
Bst6I	CTCTTC	2 cut(s)	699, 849
BstAPI	GCANNNNNTGC	1 cut(s)	695
BstC8I	GCNNGC	2 cut(s)	96, 274
BstDEI	CTNAG	2 cut(s)	64, 432
BstF5I	GGATG	3 cut(s)	765, 838, 928
BstFNI	CGCG	7 cut(s)	180, 270, 367, 382, 457, 544, 581
BstH2I	RGCGCY	1 cut(s)	617
BstHHI	GCGC	4 cut(s)	272, 546, 616, 661
BstKTI	GATC	5 cut(s)	34, 316, 371, 421, 632
BstMAI	GTCTC	4 cut(s)	54, 701, 728, 779
BstMBI	GATC	5 cut(s)	31, 313, 368, 418, 629
BstMCI	CGRYCG	1 cut(s)	570
BstNI	CCWGG	3 cut(s)	235, 283, 548
BstSCI	CCNGG	5 cut(s)	201, 233, 281, 470, 546
BstSFI	CTRYAG	1 cut(s)	102
BstSLI	GKGCMC	1 cut(s)	208
BstUI	CGCG	7 cut(s)	180, 270, 367, 382, 457, 544, 581
BstV1I	GCAGC	5 cut(s)	116, 399, 664, 682, 896
BstZI	CGGCCG	1 cut(s)	567
BsuRI	GGCC	3 cut(s)	98, 206, 569
BtrI	CACGTC	2 cut(s)	88, 721
BtsCI	GGATG	3 cut(s)	765, 838, 928
BtsI	GCAGTG	1 cut(s)	1037
BtsIMutI	CAGTG	1 cut(s)	1037
BveI	ACCTGC	1 cut(s)	427
Cac8I	GCNNGC	2 cut(s)	96, 274
CfoI	GCGC	4 cut(s)	272, 546, 616, 661
Cfr10I	RCCGGY	2 cut(s)	272, 751
Cfr13I	GGNCC	7 cut(s)	97, 159, 204, 205, 285, 394, 944
CpoI	CGGWCCG	1 cut(s)	394
CseI	GACGC	1 cut(s)	371
Csp6I	GTAC	2 cut(s)	817, 844
CspI	CGGWCCG	1 cut(s)	394
CviAII	CATG	2 cut(s)	427, 919
CviQI	GTAC	2 cut(s)	817, 844
DdeI	CTNAG	2 cut(s)	64, 432
DpnI	GATC	5 cut(s)	33, 315, 370, 420, 631
DpnII	GATC	5 cut(s)	31, 313, 368, 418, 629
DraIII	CACNNNGTG	1 cut(s)	88
DriI	GACNNNNNGTC	1 cut(s)	724
EaeI	YGGCCR	1 cut(s)	567
EagI	CGGCCG	1 cut(s)	567
Eam1104I	CTCTTC	2 cut(s)	699, 849
Eam1105I	GACNNNNNGTC	1 cut(s)	724
EarI	CTCTTC	2 cut(s)	699, 849
EciI	GGCGGA	4 cut(s)	268, 599, 761, 896
EclXI	CGGCCG	1 cut(s)	567
Eco24I	GRGCYC	4 cut(s)	192, 208, 467, 554
Eco47I	GGWCC	4 cut(s)	159, 285, 394, 944
Eco52I	CGGCCG	1 cut(s)	567
Eco88I	CYCGRG	2 cut(s)	151, 931
EcoO109I	RGGNCCY	1 cut(s)	205
EcoRII	CCWGG	3 cut(s)	233, 281, 546
EcoT38I	GRGCYC	4 cut(s)	192, 208, 467, 554
Esp3I	CGTCTC	3 cut(s)	701, 728, 779
FaeI	CATG	2 cut(s)	430, 922
FaiI	YATR	6 cut(s)	146, 173, 428, 515, 903, 920
FaqI	GGGAC	1 cut(s)	287
FatI	CATG	2 cut(s)	426, 918
FauI	CCCGC	4 cut(s)	148, 372, 453, 943
FokI	GGATG	3 cut(s)	772, 845, 935
FriOI	GRGCYC	4 cut(s)	192, 208, 467, 554
GlaI	GCGC	4 cut(s)	271, 545, 615, 660
HaeII	RGCGCY	1 cut(s)	617
HaeIII	GGCC	3 cut(s)	98, 206, 569
HapII	CCGG	8 cut(s)	13, 69, 202, 273, 325, 410, 472, 752
HgaI	GACGC	1 cut(s)	371
HhaI	GCGC	4 cut(s)	272, 546, 616, 661
Hin1II	CATG	2 cut(s)	430, 922
Hin6I	GCGC	4 cut(s)	270, 544, 614, 659
HinP1I	GCGC	4 cut(s)	270, 544, 614, 659
HinfI	GANTC	4 cut(s)	430, 493, 587, 809
HpaII	CCGG	8 cut(s)	13, 69, 202, 273, 325, 410, 472, 752
HphI	GGTGA	1 cut(s)	766
Hpy166II	GTNNAC	3 cut(s)	564, 819, 844
Hpy188I	TCNGA	6 cut(s)	36, 159, 313, 502, 673, 1005
Hpy188III	TCNNGA	8 cut(s)	29, 325, 410, 422, 442, 729, 931, 993
Hpy8I	GTNNAC	3 cut(s)	564, 819, 844
Hpy99I	CGWCG	6 cut(s)	89, 185, 387, 506, 575, 730
HpyAV	CCTTC	2 cut(s)	214, 881
HpyCH4III	ACNGT	1 cut(s)	344
HpyCH4IV	ACGT	3 cut(s)	87, 402, 720
HpyCH4V	TGCA	4 cut(s)	104, 918, 970, 1042
HpyF3I	CTNAG	2 cut(s)	64, 432
HpySE526I	ACGT	3 cut(s)	87, 402, 720
Hsp92II	CATG	2 cut(s)	430, 922
HspAI	GCGC	4 cut(s)	270, 544, 614, 659
Kpn2I	TCCGGA	2 cut(s)	324, 409
KroI	GCCGGC	1 cut(s)	272
KroNI	GCCGGC	1 cut(s)	274
Kzo9I	GATC	5 cut(s)	31, 313, 368, 418, 629
LmnI	GCTCC	5 cut(s)	187, 281, 470, 748, 933
Lsp1109I	GCAGC	5 cut(s)	116, 399, 664, 682, 896
MaeII	ACGT	3 cut(s)	87, 402, 720
MaeIII	GTNAC	3 cut(s)	398, 403, 1035
MalI	GATC	5 cut(s)	33, 315, 370, 420, 631
MboI	GATC	5 cut(s)	31, 313, 368, 418, 629
MboII	GAAGA	5 cut(s)	713, 716, 863, 866, 896
MfeI	CAATTG	1 cut(s)	956
MhlI	GDGCHC	5 cut(s)	192, 208, 467, 554, 930
MluCI	AATT	4 cut(s)	956, 974, 988, 1057
MlyI	GAGTC	3 cut(s)	424, 581, 818
MmeI	TCCRAC	2 cut(s)	137, 525
MroI	TCCGGA	2 cut(s)	324, 409
MroNI	GCCGGC	1 cut(s)	272
MroXI	GAANNNNTTC	1 cut(s)	242
MseI	TTAA	1 cut(s)	1056
MslI	CAYNNNNRTG	1 cut(s)	923
MspA1I	CMGCKG	1 cut(s)	950
MspI	CCGG	8 cut(s)	13, 69, 202, 273, 325, 410, 472, 752
MspR9I	CCNGG	5 cut(s)	203, 235, 283, 472, 548
MunI	CAATTG	1 cut(s)	956
MvaI	CCWGG	3 cut(s)	235, 283, 548
MvnI	CGCG	7 cut(s)	180, 270, 367, 382, 457, 544, 581
NaeI	GCCGGC	1 cut(s)	274
NciI	CCSGG	2 cut(s)	203, 472
NdeII	GATC	5 cut(s)	31, 313, 368, 418, 629
NgoMIV	GCCGGC	1 cut(s)	272
NlaIII	CATG	2 cut(s)	430, 922
NlaIV	GGNNCC	9 cut(s)	99, 161, 189, 206, 277, 346, 466, 750, 945
NmuCI	GTSAC	2 cut(s)	403, 1035
PcsI	WCGNNNNNNNCGW	3 cut(s)	379, 638, 818
PdiI	GCCGGC	1 cut(s)	274
PdmI	GAANNNNTTC	1 cut(s)	242
PfeI	GAWTC	1 cut(s)	493
PflFI	GACNNNGTC	1 cut(s)	575
PleI	GAGTC	3 cut(s)	424, 581, 817
PpsI	GAGTC	3 cut(s)	424, 581, 817
Psp6I	CCWGG	3 cut(s)	233, 281, 546
PspGI	CCWGG	3 cut(s)	233, 281, 546
PspN4I	GGNNCC	9 cut(s)	99, 161, 189, 206, 277, 346, 466, 750, 945
PspOMI	GGGCCC	1 cut(s)	204
PspPI	GGNCC	7 cut(s)	97, 159, 204, 205, 285, 394, 944
PstI	CTGCAG	1 cut(s)	106
PsyI	GACNNNGTC	1 cut(s)	575
RsaI	GTAC	2 cut(s)	818, 845
RsaNI	GTAC	2 cut(s)	817, 844
RseI	CAYNNNNRTG	1 cut(s)	923
Rsr2I	CGGWCCG	1 cut(s)	394
RsrII	CGGWCCG	1 cut(s)	394
SaqAI	TTAA	1 cut(s)	1056
Sau3AI	GATC	5 cut(s)	31, 313, 368, 418, 629
Sau96I	GGNCC	7 cut(s)	97, 159, 204, 205, 285, 394, 944
SchI	GAGTC	3 cut(s)	424, 581, 818
ScrFI	CCNGG	5 cut(s)	203, 235, 283, 472, 548
SduI	GDGCHC	5 cut(s)	192, 208, 467, 554, 930
SfcI	CTRYAG	1 cut(s)	102
SinI	GGWCC	4 cut(s)	159, 285, 394, 944
SmiMI	CAYNNNNRTG	1 cut(s)	923
Sse9I	AATT	4 cut(s)	956, 974, 988, 1057
StyD4I	CCNGG	5 cut(s)	201, 233, 281, 470, 546
TaaI	ACNGT	1 cut(s)	344
TaiI	ACGT	3 cut(s)	90, 405, 723
TaqI	TCGA	8 cut(s)	30, 168, 423, 441, 491, 533, 812, 994
TaqII	GACCGA	1 cut(s)	382
TasI	AATT	4 cut(s)	956, 974, 988, 1057
TfiI	GAWTC	1 cut(s)	493
Tru1I	TTAA	1 cut(s)	1056
Tru9I	TTAA	1 cut(s)	1056
TscAI	CASTG	1 cut(s)	1044
TseFI	GTSAC	2 cut(s)	403, 1035
TseI	GCWGC	5 cut(s)	104, 387, 677, 695, 909
Tsp45I	GTSAC	2 cut(s)	403, 1035
TspDTI	ATGAA	2 cut(s)	530, 968
TspGWI	ACGGA	5 cut(s)	283, 287, 386, 486, 803
TspRI	CASTG	1 cut(s)	1044
Tth111I	GACNNNGTC	1 cut(s)	575
VpaK11BI	GGWCC	4 cut(s)	159, 285, 394, 944
XapI	RAATTY	1 cut(s)	988
XmnI	GAANNNNTTC	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.