Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004288

Physical Location & Seq

Genomic Coordinates Forward (+)

23929336 .. 23930424

Gene Structure 1089 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00184620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGAAGGTCGCCCGAGGCTAACGCTTCTCGATCAGATGTCAGCAAGTGCGGACGGCAGAGCATTAGCCGGACTGAGCCTCGAAGACGTCTTATCCCCAGCAGCAGCAGCAGCACCCAAAGAACCCCCGCCGGCTCCGGTGATACCCGCGTCTATTTCGGGTCTGACCCTCCTTGACATTATCCGCAACGAGGAGCCCAAATCGTATAAGGCCTTGATCGGAAAGAAAGACAAGAAGCCGTGGAAGACGTTCAAAGACCGCCTCCGCCTCAAGAAAGCCAGCGCCGCCTGGGCCTCCACCGCCCAAGTCCCCACCTCCGACGTCCCCGTCCGGAGCAACCACCACCACCGCCAGCCAGGCTACAGCCACAGCCGATCCCGCAACTCCATCCGTTACGTCACGCCGGAGCCGCAGCCGATGGCTGAGCCCGGAGCAAACGCGGACACCAGCAACCCTCCGCCGCAGGCCGCCGGTTCTGCGCCGAGTTTCAATCGGCGGAGCTCCGTGCGGTTCGCGTCGGACATTGAGTCGCCGCGGCCCAAGCTGGAGACGGCGATCAGCGAGGAGAGGTCGCTGTCGGCGAGGGAGGCGGTGGCGGCACAAGAGGCTGCTGAGGCCGCCGCCGCAGCAGCCGCGGCTGAGGCGGCAGCGGCGGAGGAGAAGGCAGAGAGAGAAGGAGGAGGAGGAGAGGGAGGGGGAGACGGGGCATCTTCGTCGGAGAAGGCTTCCGGTGAAACGGTAACGTCGCCGGAGGCGGAGCCGGTGAGGATGTCGCTGATGGACTTGTTGGAGGAGACGGACAGGCAGATGGGGCTGGAGGGTGGGAGGTACACCATGGAAGAAGAGGAAGAAGAGGAGGAGGAGGAGGAGGAAGAGCAAGTGGAGGAGGTGGTGGTGAAGGAGGAAGAACCGGAAGAAGGTGGGGGCGTGGAGCACAGTTGCTGCGTGTGCATGGTGAGGCATAAAGGCGCGGCATTTATCCCCTGCGGGCATACCTTTTGCCGGATGTGCTCCAGAGAGTTGTGGGTGCAGAGAGGGAACTGCCCCCTCTGCAACAATTTCATCTTGGAAATTCTGGACATTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

362

Amino Acids

38.93

Weight (kDa)

4.87

Isoelectric Point (pI)

66.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	311 - 355	8e-10	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	314 - 351	6.3e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25030 AT3G25030 AT3G25030 AT3G25030 AT4G03965 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G22250
fragaria_vesca	FvH4_2g18810
malus_domestica	MD05G1174100.v1.1 MD10G1163000.v1.1
prunus_persica	Prupe.8G201500_v2.0.a1 Prupe.8G201500_v2.0.a1
pyrus_communis	pycom05g16090
rosa_chinensis	RchiOBHm_Chr6g0284561
rosa_laevigata	RLG00000012738
rosa_multiflora	Rmu_sc0001246.1_g000002 Rmu_sc0001246.1_g000003 Rmu_sc0005257.1_g000005
rosa_roxburghii	Rroxscaffold_7G00184620
rosa_rugosa	Rorug06G0164200
rosa_samantha	Rh6BG277300 Rh6CG279500 Rh6DG271900
rosa_wichuraiana	Rw6G023820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	326
AatII	GACGTC	2 cut(s)	90, 324
AccII	CGCG	6 cut(s)	149, 440, 515, 535, 635, 971
AccIII	TCCGGA	1 cut(s)	330
AclWI	GGATC	1 cut(s)	369
AcsI	RAATTY	1 cut(s)	1071
AcyI	GRCGYC	2 cut(s)	87, 321
AfaI	GTAC	1 cut(s)	830
AfiI	CCNNNNNNNGG	3 cut(s)	190, 917, 1002
AgsI	TTSAA	2 cut(s)	253, 490
AhdI	GACNNNNNGTC	1 cut(s)	526
AjnI	CCWGG	2 cut(s)	287, 355
AluBI	AGCT	2 cut(s)	501, 544
AluI	AGCT	2 cut(s)	501, 544
Alw21I	GWGCWC	3 cut(s)	503, 936, 1013
Alw26I	GTCTC	3 cut(s)	542, 693, 788
AlwI	GGATC	1 cut(s)	369
AlwNI	CAGNNNCTG	1 cut(s)	942
Ama87I	CYCGRG	1 cut(s)	13
Aor13HI	TCCGGA	1 cut(s)	330
AoxI	GGCC	5 cut(s)	210, 291, 465, 536, 615
ApoI	RAATTY	1 cut(s)	1071
Asp700I	GAANNNNTTC	1 cut(s)	248
AspLEI	GCGC	3 cut(s)	284, 481, 971
AspS9I	GGNCC	2 cut(s)	291, 537
AsuC2I	CCSGG	1 cut(s)	429
AsuHPI	GGTGA	5 cut(s)	151, 743, 775, 907, 967
AvaI	CYCGRG	1 cut(s)	13
BaeI	ACNNNNGTAYC	2 cut(s)	134, 167
BanII	GRGCYC	3 cut(s)	198, 429, 503
BbsI	GAAGAC	2 cut(s)	90, 251
Bbv12I	GWGCWC	3 cut(s)	503, 936, 1013
BbvCI	CCTCAGC	2 cut(s)	612, 639
BccI	CCATC	4 cut(s)	395, 412, 772, 802
BceAI	ACGGC	3 cut(s)	70, 223, 567
BcgI	CGANNNNNNTGC	2 cut(s)	696, 730
BciT130I	CCWGG	2 cut(s)	289, 357
BcnI	CCSGG	1 cut(s)	429
BcoDI	GTCTC	3 cut(s)	542, 693, 788
BfmI	CTRYAG	1 cut(s)	361
BfoI	RGCGCY	1 cut(s)	285
BglI	GCCNNNNNGGC	2 cut(s)	290, 357
BlpI	GCTNAGC	1 cut(s)	423
Bme1390I	CCNGG	3 cut(s)	289, 357, 429
BmeRI	GACNNNNNGTC	1 cut(s)	526
BmeT110I	CYCGRG	1 cut(s)	13
BmgT120I	GGNCC	2 cut(s)	291, 537
BmiI	GGNNCC	4 cut(s)	135, 195, 408, 759
BmrFI	CCNGG	3 cut(s)	289, 357, 429
BmsI	GCATC	1 cut(s)	716
BpiI	GAAGAC	2 cut(s)	90, 251
BpmI	CTGGAG	3 cut(s)	566, 836, 997
Bpu10I	CCTNAGC	2 cut(s)	612, 639
Bpu1102I	GCTNAGC	1 cut(s)	423
BpuEI	CTTGAG	1 cut(s)	254
BpuMI	CCSGG	1 cut(s)	429
BsaHI	GRCGYC	2 cut(s)	87, 321
BsaJI	CCNNGG	6 cut(s)	14, 239, 288, 533, 633, 834
BsaWI	WCCGGW	4 cut(s)	136, 330, 728, 910
Bsc4I	CCNNNNNNNGG	3 cut(s)	190, 917, 1002
Bse118I	RCCGGY	3 cut(s)	130, 470, 760
BseAI	TCCGGA	1 cut(s)	330
BseBI	CCWGG	2 cut(s)	289, 357
BseDI	CCNNGG	6 cut(s)	14, 239, 288, 533, 633, 834
BseGI	GGATG	3 cut(s)	387, 774, 1011
BseLI	CCNNNNNNNGG	3 cut(s)	190, 917, 1002
BseMII	CTCAG	4 cut(s)	65, 414, 603, 630
BseYI	CCCAGC	1 cut(s)	97
BsgI	GTGCAG	1 cut(s)	1049
Bsh1236I	CGCG	6 cut(s)	149, 440, 515, 535, 635, 971
BshFI	GGCC	5 cut(s)	212, 293, 467, 538, 617
BsiHKAI	GWGCWC	3 cut(s)	503, 936, 1013
BsiHKCI	CYCGRG	1 cut(s)	13
BslFI	GGGAC	2 cut(s)	293, 308
BslI	CCNNNNNNNGG	3 cut(s)	190, 917, 1002
BsmAI	GTCTC	3 cut(s)	542, 693, 788
BsmBI	CGTCTC	3 cut(s)	542, 693, 788
BsmFI	GGGAC	2 cut(s)	293, 308
BsnI	GGCC	5 cut(s)	212, 293, 467, 538, 617
BsoBI	CYCGRG	1 cut(s)	13
Bsp1286I	GDGCHC	5 cut(s)	198, 429, 503, 936, 1013
Bsp13I	TCCGGA	1 cut(s)	330
Bsp143I	GATC	4 cut(s)	31, 216, 374, 555
Bsp1720I	GCTNAGC	1 cut(s)	423
Bsp19I	CCATGG	1 cut(s)	834
BspANI	GGCC	5 cut(s)	212, 293, 467, 538, 617
BspCNI	CTCAG	4 cut(s)	66, 415, 604, 631
BspEI	TCCGGA	1 cut(s)	330
BspFNI	CGCG	6 cut(s)	149, 440, 515, 535, 635, 971
BspLI	GGNNCC	4 cut(s)	135, 195, 408, 759
BspPI	GGATC	1 cut(s)	369
BspQI	GCTCTTC	1 cut(s)	867
BsrFI	RCCGGY	3 cut(s)	130, 470, 760
BssAI	RCCGGY	3 cut(s)	130, 470, 760
BssECI	CCNNGG	6 cut(s)	14, 239, 288, 533, 633, 834
BssMI	GATC	4 cut(s)	31, 216, 374, 555
BssNI	GRCGYC	2 cut(s)	87, 321
BssT1I	CCWWGG	1 cut(s)	834
Bst2UI	CCWGG	2 cut(s)	289, 357
Bst4CI	ACNGT	2 cut(s)	739, 938
Bst6I	CTCTTC	3 cut(s)	837, 846, 867
BstACI	GRCGYC	2 cut(s)	87, 321
BstC8I	GCNNGC	5 cut(s)	132, 280, 353, 465, 989
BstDEI	CTNAG	4 cut(s)	74, 423, 612, 639
BstDSI	CCRYGG	4 cut(s)	239, 533, 633, 834
BstF5I	GGATG	3 cut(s)	387, 774, 1011
BstFNI	CGCG	6 cut(s)	149, 440, 515, 535, 635, 971
BstH2I	RGCGCY	1 cut(s)	285
BstHHI	GCGC	3 cut(s)	284, 481, 971
BstKTI	GATC	4 cut(s)	34, 219, 377, 558
BstMAI	GTCTC	3 cut(s)	542, 693, 788
BstMBI	GATC	4 cut(s)	31, 216, 374, 555
BstNI	CCWGG	2 cut(s)	289, 357
BstSCI	CCNGG	3 cut(s)	287, 355, 427
BstSFI	CTRYAG	1 cut(s)	361
BstUI	CGCG	6 cut(s)	149, 440, 515, 535, 635, 971
BstV2I	GAAGAC	2 cut(s)	90, 251
BsuRI	GGCC	5 cut(s)	212, 293, 467, 538, 617
BtgI	CCRYGG	4 cut(s)	239, 533, 633, 834
BtsCI	GGATG	3 cut(s)	387, 774, 1011
Cac8I	GCNNGC	5 cut(s)	132, 280, 353, 465, 989
CaiI	CAGNNNCTG	1 cut(s)	942
CfoI	GCGC	3 cut(s)	284, 481, 971
Cfr10I	RCCGGY	3 cut(s)	130, 470, 760
Cfr13I	GGNCC	2 cut(s)	291, 537
Cfr42I	CCGCGG	2 cut(s)	536, 636
CseI	GACGC	2 cut(s)	138, 504
Csp6I	GTAC	1 cut(s)	829
CviAII	CATG	2 cut(s)	835, 952
CviQI	GTAC	1 cut(s)	829
DdeI	CTNAG	4 cut(s)	74, 423, 612, 639
DpnI	GATC	4 cut(s)	33, 218, 376, 557
DpnII	GATC	4 cut(s)	31, 216, 374, 555
DrdI	GACNNNNNNGTC	1 cut(s)	326
DriI	GACNNNNNGTC	1 cut(s)	526
DseDI	GACNNNNNNGTC	1 cut(s)	326
Eam1104I	CTCTTC	3 cut(s)	837, 846, 867
Eam1105I	GACNNNNNGTC	1 cut(s)	526
EarI	CTCTTC	3 cut(s)	837, 846, 867
EciI	GGCGGA	5 cut(s)	254, 447, 511, 668, 770
Ecl136II	GAGCTC	1 cut(s)	501
Eco130I	CCWWGG	1 cut(s)	834
Eco147I	AGGCCT	1 cut(s)	212
Eco24I	GRGCYC	3 cut(s)	198, 429, 503
Eco53kI	GAGCTC	1 cut(s)	501
Eco88I	CYCGRG	1 cut(s)	13
EcoICRI	GAGCTC	1 cut(s)	501
EcoRII	CCWGG	2 cut(s)	287, 355
EcoT14I	CCWWGG	1 cut(s)	834
EcoT38I	GRGCYC	3 cut(s)	198, 429, 503
ErhI	CCWWGG	1 cut(s)	834
Esp3I	CGTCTC	3 cut(s)	542, 693, 788
FaeI	CATG	2 cut(s)	838, 955
FaiI	YATR	5 cut(s)	207, 836, 953, 963, 993
FaqI	GGGAC	2 cut(s)	293, 308
FatI	CATG	2 cut(s)	834, 951
FauI	CCCGC	4 cut(s)	135, 154, 386, 980
FokI	GGATG	3 cut(s)	374, 781, 1018
FriOI	GRGCYC	3 cut(s)	198, 429, 503
GlaI	GCGC	3 cut(s)	283, 480, 970
GsaI	CCCAGC	1 cut(s)	101
GsuI	CTGGAG	3 cut(s)	566, 836, 997
HaeII	RGCGCY	1 cut(s)	285
HaeIII	GGCC	5 cut(s)	212, 293, 467, 538, 617
HgaI	GACGC	2 cut(s)	138, 504
HhaI	GCGC	3 cut(s)	284, 481, 971
Hin1I	GRCGYC	2 cut(s)	87, 321
Hin1II	CATG	2 cut(s)	838, 955
Hin6I	GCGC	3 cut(s)	282, 479, 969
HinP1I	GCGC	3 cut(s)	282, 479, 969
HinfI	GANTC	1 cut(s)	527
HphI	GGTGA	5 cut(s)	151, 743, 775, 907, 967
Hpy166II	GTNNAC	1 cut(s)	831
Hpy188I	TCNGA	7 cut(s)	36, 165, 221, 319, 520, 718, 1088
Hpy188III	TCNNGA	5 cut(s)	29, 271, 331, 1014, 1076
Hpy8I	GTNNAC	1 cut(s)	831
Hpy99I	CGWCG	4 cut(s)	323, 520, 718, 748
HpyAV	CCTTC	5 cut(s)	655, 668, 715, 892, 911
HpyCH4III	ACNGT	2 cut(s)	739, 938
HpyCH4IV	ACGT	5 cut(s)	87, 248, 321, 396, 743
HpyCH4V	TGCA	3 cut(s)	951, 1030, 1053
HpyF3I	CTNAG	4 cut(s)	74, 423, 612, 639
HpySE526I	ACGT	5 cut(s)	87, 248, 321, 396, 743
Hsp92I	GRCGYC	2 cut(s)	87, 321
Hsp92II	CATG	2 cut(s)	838, 955
HspAI	GCGC	3 cut(s)	282, 479, 969
Kpn2I	TCCGGA	1 cut(s)	330
KroI	GCCGGC	1 cut(s)	130
KroNI	GCCGGC	1 cut(s)	132
KspI	CCGCGG	2 cut(s)	536, 636
Kzo9I	GATC	4 cut(s)	31, 216, 374, 555
LguI	GCTCTTC	1 cut(s)	867
LweI	GCATC	1 cut(s)	716
MaeII	ACGT	5 cut(s)	87, 248, 321, 396, 743
MaeIII	GTNAC	3 cut(s)	392, 397, 739
MalI	GATC	4 cut(s)	33, 218, 376, 557
MboI	GATC	4 cut(s)	31, 216, 374, 555
MhlI	GDGCHC	5 cut(s)	198, 429, 503, 936, 1013
MluCI	AATT	2 cut(s)	1057, 1071
MlyI	GAGTC	1 cut(s)	536
MmeI	TCCRAC	4 cut(s)	342, 498, 696, 768
MroI	TCCGGA	1 cut(s)	330
MroNI	GCCGGC	1 cut(s)	130
MroXI	GAANNNNTTC	1 cut(s)	248
MspA1I	CMGCKG	3 cut(s)	535, 635, 650
MspR9I	CCNGG	3 cut(s)	289, 357, 429
MvaI	CCWGG	2 cut(s)	289, 357
MvnI	CGCG	6 cut(s)	149, 440, 515, 535, 635, 971
NaeI	GCCGGC	1 cut(s)	132
NciI	CCSGG	1 cut(s)	429
NcoI	CCATGG	1 cut(s)	834
NdeII	GATC	4 cut(s)	31, 216, 374, 555
NgoMIV	GCCGGC	1 cut(s)	130
NlaIII	CATG	2 cut(s)	838, 955
NlaIV	GGNNCC	4 cut(s)	135, 195, 408, 759
NmeAIII	GCCGAG	1 cut(s)	507
NmuCI	GTSAC	1 cut(s)	397
PceI	AGGCCT	1 cut(s)	212
PciSI	GCTCTTC	1 cut(s)	867
PcsI	WCGNNNNNNNCGW	1 cut(s)	578
PdiI	GCCGGC	1 cut(s)	132
PdmI	GAANNNNTTC	1 cut(s)	248
PleI	GAGTC	1 cut(s)	535
PpsI	GAGTC	1 cut(s)	535
Psp124BI	GAGCTC	1 cut(s)	503
Psp6I	CCWGG	2 cut(s)	287, 355
PspFI	CCCAGC	1 cut(s)	97
PspGI	CCWGG	2 cut(s)	287, 355
PspN4I	GGNNCC	4 cut(s)	135, 195, 408, 759
PspPI	GGNCC	2 cut(s)	291, 537
PstNI	CAGNNNCTG	1 cut(s)	942
RsaI	GTAC	1 cut(s)	830
RsaNI	GTAC	1 cut(s)	829
SacI	GAGCTC	1 cut(s)	503
SacII	CCGCGG	2 cut(s)	536, 636
SapI	GCTCTTC	1 cut(s)	867
Sau3AI	GATC	4 cut(s)	31, 216, 374, 555
Sau96I	GGNCC	2 cut(s)	291, 537
SchI	GAGTC	1 cut(s)	536
ScrFI	CCNGG	3 cut(s)	289, 357, 429
SduI	GDGCHC	5 cut(s)	198, 429, 503, 936, 1013
SfaNI	GCATC	1 cut(s)	716
SfcI	CTRYAG	1 cut(s)	361
Sfr303I	CCGCGG	2 cut(s)	536, 636
SgrBI	CCGCGG	2 cut(s)	536, 636
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
Sse9I	AATT	2 cut(s)	1057, 1071
SseBI	AGGCCT	1 cut(s)	212
SstI	GAGCTC	1 cut(s)	503
StuI	AGGCCT	1 cut(s)	212
StyD4I	CCNGG	3 cut(s)	287, 355, 427
StyI	CCWWGG	1 cut(s)	834
TaaI	ACNGT	2 cut(s)	739, 938
TaiI	ACGT	5 cut(s)	90, 251, 324, 399, 746
TaqI	TCGA	2 cut(s)	30, 81
TasI	AATT	2 cut(s)	1057, 1071
TseFI	GTSAC	1 cut(s)	397
Tsp45I	GTSAC	1 cut(s)	397
TspDTI	ATGAA	1 cut(s)	1051
TspGWI	ACGGA	3 cut(s)	380, 493, 812
XapI	RAATTY	1 cut(s)	1071
XmnI	GAANNNNTTC	1 cut(s)	248
ZraI	GACGTC	2 cut(s)	88, 322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.