Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0004288

Physical Location & Seq

Genomic Coordinates Reverse (-)

25390355 .. 25392455

Gene Structure 2101 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1163000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGTCAGCAAGTAGCAACGGGAGAGACTTAGCCGGATTGAGCCTAGACGATTTGTTGCTGGCCCCTGCAGCCGCCAAACACCCCCCTCCACCGCCAACACTTCCCCCCACAATCTCGGGTCGGACCCTACTCGATATAATCCGCGACGAGGAGCCCAAGTCCTACCGGGCCCTGATTGGCAAGAAGGATAAGAAAGCCTGGAAGTCGTTCAAAGACCGCCTCCTACTCAAACGCGCCGGCTCCGCCTGGACTTCCTCCGTCCGTGTCCCCACCTCCGATATCCCTATCCGGAACACAGCTAACTACGCTTCCAATCGCCACCACCACCCGCGATCTCACAACTCGCGTCGCGGCTCGGTTCGTTACGTCACCCCCGAGTCCAATCTCGACATGACTCACCAGGAGAGGCAGATTGCGCGGCGGGGCTCCACCCGGTTCAGCCCCAACGCCTCCATTCCGTCCGACGAGGTGGATGCGGACAACCCCCGCGCCTCGATGTTCACTCGCCGGAGCTCCGTGCGGTTCACGGCCGACGAAGTCGCGACTGACTCGCCAAGGCGGCGATTGTCGGCGGCGTTGGAAGAGGAGAGATCGCTGTCGGCGAGAGAAGCGATGGCGGCGCAGGAGGCCGCTGAAGCTGCCGCCGCGGCATCGGCGGCGTCGGAAGAGGCCGCTGAGGCAGAAGAAGAGACCGGGAACGAAATGCCGTCCGTGGAGACGGGTGCGGCGGCGGGTACGGCGGAGCCGGTGAGGATGTCGTTGATGGACTTGTTGGAAGAGACGGACAGGCAGATGGGGGTGGAGTCGAGGTACACGATGGACGAGGACGAGGATGAGGAGTGCGAGGAGGAAGAGGAAGAGGAGGAGGAGGAGGCAGCGGCGGAAGAAGGGAATGTGGAGTATAACTGCTGCGTGTGCATGGTGAGGCATAAAGGGGCTGCGTTTATCCCCTGCGGGCACACGTTCTGCAGGATGTGCTCCCGAGAGCTGTGGGTCCAGCGGGGCAATTGTCCGCTCTGCAACAATTTCATCTTGGAAATTCTGGATATTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

352

Amino Acids

38.81

Weight (kDa)

4.95

Isoelectric Point (pI)

61.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	301 - 344	6e-10	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	303 - 340	5.2e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25030 AT3G25030 AT3G25030 AT3G25030 AT4G03965 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G22250
fragaria_vesca	FvH4_2g18810
malus_domestica	MD05G1174100.v1.1 MD10G1163000.v1.1
prunus_persica	Prupe.8G201500_v2.0.a1 Prupe.8G201500_v2.0.a1
pyrus_communis	pycom05g16090
rosa_chinensis	RchiOBHm_Chr6g0284561
rosa_laevigata	RLG00000012738
rosa_multiflora	Rmu_sc0001246.1_g000002 Rmu_sc0001246.1_g000003 Rmu_sc0005257.1_g000005
rosa_roxburghii	Rroxscaffold_7G00184620
rosa_rugosa	Rorug06G0164200
rosa_samantha	Rh6BG277300 Rh6CG279500 Rh6DG271900
rosa_wichuraiana	Rw6G023820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1015
AccII	CGCG	9 cut(s)	144, 234, 331, 346, 351, 418, 489, 542, 647
AccIII	TCCGGA	1 cut(s)	288
AcoI	YGGCCR	1 cut(s)	528
AcsI	RAATTY	1 cut(s)	1038
AcuI	CTGAAG	1 cut(s)	654
AcyI	GRCGYC	1 cut(s)	659
AfaI	GTAC	2 cut(s)	736, 812
AfiI	CCNNNNNNNGG	1 cut(s)	148
AflIII	ACRYGT	1 cut(s)	960
AgsI	TTSAA	1 cut(s)	211
AjnI	CCWGG	3 cut(s)	197, 245, 399
AluBI	AGCT	4 cut(s)	299, 513, 638, 988
AluI	AGCT	4 cut(s)	299, 513, 638, 988
Alw21I	GWGCWC	2 cut(s)	515, 980
Alw26I	GTCTC	4 cut(s)	18, 683, 710, 773
Ama87I	CYCGRG	3 cut(s)	115, 374, 981
Aor13HI	TCCGGA	1 cut(s)	288
AoxI	GGCC	5 cut(s)	60, 168, 528, 627, 669
ApaI	GGGCCC	1 cut(s)	172
ApeKI	GCWGC	5 cut(s)	68, 638, 875, 909, 938
ApoI	RAATTY	1 cut(s)	1038
Asp700I	GAANNNNTTC	1 cut(s)	206
AspLEI	GCGC	4 cut(s)	236, 418, 491, 622
AspS9I	GGNCC	5 cut(s)	61, 123, 168, 169, 994
AsuC2I	CCSGG	3 cut(s)	167, 433, 694
AsuHPI	GGTGA	4 cut(s)	361, 389, 760, 934
AvaI	CYCGRG	3 cut(s)	115, 374, 981
AvaII	GGWCC	2 cut(s)	123, 994
BaeGI	GKGCMC	2 cut(s)	172, 960
BanII	GRGCYC	4 cut(s)	156, 172, 428, 515
Bbv12I	GWGCWC	2 cut(s)	515, 980
BbvCI	CCTCAGC	1 cut(s)	675
BbvI	GCAGC	5 cut(s)	80, 625, 887, 896, 925
BccI	CCATC	4 cut(s)	607, 757, 787, 811
BceAI	ACGGC	3 cut(s)	543, 691, 753
BcgI	CGANNNNNNTGC	2 cut(s)	455, 489
BciT130I	CCWGG	3 cut(s)	199, 247, 401
BcnI	CCSGG	3 cut(s)	167, 433, 694
BcoDI	GTCTC	4 cut(s)	18, 683, 710, 773
BfaI	CTAG	1 cut(s)	44
BfmI	CTRYAG	2 cut(s)	66, 967
BglI	GCCNNNNNGGC	3 cut(s)	559, 647, 677
Bme1390I	CCNGG	6 cut(s)	167, 199, 247, 401, 433, 694
Bme18I	GGWCC	2 cut(s)	123, 994
BmeT110I	CYCGRG	3 cut(s)	115, 374, 981
BmgT120I	GGNCC	5 cut(s)	61, 123, 168, 169, 994
BmiI	GGNNCC	8 cut(s)	63, 125, 153, 170, 241, 427, 744, 995
BmrFI	CCNGG	6 cut(s)	167, 199, 247, 401, 433, 694
BmsI	GCATC	2 cut(s)	463, 659
Bpu10I	CCTNAGC	1 cut(s)	675
BpuMI	CCSGG	3 cut(s)	167, 433, 694
BsaHI	GRCGYC	1 cut(s)	659
BsaI	GGTCTC	1 cut(s)	683
BsaJI	CCNNGG	3 cut(s)	554, 645, 711
BsaWI	WCCGGW	1 cut(s)	288
BsaXI	ACNNNNNCTCC	4 cut(s)	143, 173, 794, 824
Bsc4I	CCNNNNNNNGG	1 cut(s)	148
Bse118I	RCCGGY	2 cut(s)	236, 745
BseAI	TCCGGA	1 cut(s)	288
BseBI	CCWGG	3 cut(s)	199, 247, 401
BseDI	CCNNGG	3 cut(s)	554, 645, 711
BseGI	GGATG	4 cut(s)	478, 759, 838, 978
BseLI	CCNNNNNNNGG	1 cut(s)	148
BseMII	CTCAG	1 cut(s)	666
BseRI	GAGGAG	8 cut(s)	164, 599, 851, 860, 875, 878, 881, 884
BseSI	GKGCMC	2 cut(s)	172, 960
BseX3I	CGGCCG	1 cut(s)	528
BseXI	GCAGC	5 cut(s)	80, 625, 887, 896, 925
Bsh1236I	CGCG	9 cut(s)	144, 234, 331, 346, 351, 418, 489, 542, 647
Bsh1285I	CGRYCG	1 cut(s)	531
BshFI	GGCC	5 cut(s)	62, 170, 530, 629, 671
BsiEI	CGRYCG	1 cut(s)	531
BsiHKAI	GWGCWC	2 cut(s)	515, 980
BsiHKCI	CYCGRG	3 cut(s)	115, 374, 981
BsiSI	CCGG	8 cut(s)	33, 166, 237, 289, 433, 508, 693, 746
BslFI	GGGAC	1 cut(s)	251
BslI	CCNNNNNNNGG	1 cut(s)	148
BsmAI	GTCTC	4 cut(s)	18, 683, 710, 773
BsmBI	CGTCTC	2 cut(s)	710, 773
BsmFI	GGGAC	1 cut(s)	251
BsnI	GGCC	5 cut(s)	62, 170, 530, 629, 671
Bso31I	GGTCTC	1 cut(s)	683
BsoBI	CYCGRG	3 cut(s)	115, 374, 981
Bsp120I	GGGCCC	1 cut(s)	168
Bsp1286I	GDGCHC	6 cut(s)	156, 172, 428, 515, 960, 980
Bsp13I	TCCGGA	1 cut(s)	288
Bsp143I	GATC	2 cut(s)	332, 590
Bsp68I	TCGCGA	1 cut(s)	542
BspANI	GGCC	5 cut(s)	62, 170, 530, 629, 671
BspCNI	CTCAG	1 cut(s)	667
BspEI	TCCGGA	1 cut(s)	288
BspFNI	CGCG	9 cut(s)	144, 234, 331, 346, 351, 418, 489, 542, 647
BspLI	GGNNCC	8 cut(s)	63, 125, 153, 170, 241, 427, 744, 995
BspMAI	CTGCAG	2 cut(s)	70, 971
BspTNI	GGTCTC	1 cut(s)	683
BsrBI	CCGCTC	1 cut(s)	1015
BsrFI	RCCGGY	2 cut(s)	236, 745
BssAI	RCCGGY	2 cut(s)	236, 745
BssECI	CCNNGG	3 cut(s)	554, 645, 711
BssMI	GATC	2 cut(s)	332, 590
BssNI	GRCGYC	1 cut(s)	659
BssT1I	CCWWGG	1 cut(s)	554
Bst2UI	CCWGG	3 cut(s)	199, 247, 401
Bst6I	CTCTTC	6 cut(s)	576, 660, 681, 771, 846, 852
BstACI	GRCGYC	1 cut(s)	659
BstAPI	GCANNNNNTGC	1 cut(s)	975
BstC8I	GCNNGC	3 cut(s)	60, 238, 956
BstDEI	CTNAG	2 cut(s)	28, 675
BstDSI	CCRYGG	2 cut(s)	645, 711
BstF5I	GGATG	4 cut(s)	478, 759, 838, 978
BstFNI	CGCG	9 cut(s)	144, 234, 331, 346, 351, 418, 489, 542, 647
BstHHI	GCGC	4 cut(s)	236, 418, 491, 622
BstKTI	GATC	2 cut(s)	335, 593
BstMAI	GTCTC	4 cut(s)	18, 683, 710, 773
BstMBI	GATC	2 cut(s)	332, 590
BstMCI	CGRYCG	1 cut(s)	531
BstNI	CCWGG	3 cut(s)	199, 247, 401
BstSCI	CCNGG	6 cut(s)	165, 197, 245, 399, 431, 692
BstSFI	CTRYAG	2 cut(s)	66, 967
BstSLI	GKGCMC	2 cut(s)	172, 960
BstUI	CGCG	9 cut(s)	144, 234, 331, 346, 351, 418, 489, 542, 647
BstV1I	GCAGC	5 cut(s)	80, 625, 887, 896, 925
BstZI	CGGCCG	1 cut(s)	528
BsuRI	GGCC	5 cut(s)	62, 170, 530, 629, 671
BtgI	CCRYGG	2 cut(s)	645, 711
BtgZI	GCGATG	1 cut(s)	626
BtsCI	GGATG	4 cut(s)	478, 759, 838, 978
BtuMI	TCGCGA	1 cut(s)	542
Cac8I	GCNNGC	3 cut(s)	60, 238, 956
CfoI	GCGC	4 cut(s)	236, 418, 491, 622
Cfr10I	RCCGGY	2 cut(s)	236, 745
Cfr13I	GGNCC	5 cut(s)	61, 123, 168, 169, 994
Cfr42I	CCGCGG	1 cut(s)	648
CseI	GACGC	2 cut(s)	335, 648
Csp6I	GTAC	2 cut(s)	735, 811
CviAII	CATG	2 cut(s)	391, 919
CviQI	GTAC	2 cut(s)	735, 811
DdeI	CTNAG	2 cut(s)	28, 675
DpnI	GATC	2 cut(s)	334, 592
DpnII	GATC	2 cut(s)	332, 590
EaeI	YGGCCR	1 cut(s)	528
EagI	CGGCCG	1 cut(s)	528
Eam1104I	CTCTTC	6 cut(s)	576, 660, 681, 771, 846, 852
EarI	CTCTTC	6 cut(s)	576, 660, 681, 771, 846, 852
EciI	GGCGGA	3 cut(s)	232, 755, 896
Ecl136II	GAGCTC	1 cut(s)	513
EclXI	CGGCCG	1 cut(s)	528
Eco130I	CCWWGG	1 cut(s)	554
Eco24I	GRGCYC	4 cut(s)	156, 172, 428, 515
Eco31I	GGTCTC	1 cut(s)	683
Eco32I	GATATC	1 cut(s)	280
Eco47I	GGWCC	2 cut(s)	123, 994
Eco52I	CGGCCG	1 cut(s)	528
Eco53kI	GAGCTC	1 cut(s)	513
Eco57I	CTGAAG	1 cut(s)	654
Eco88I	CYCGRG	3 cut(s)	115, 374, 981
EcoICRI	GAGCTC	1 cut(s)	513
EcoO109I	RGGNCCY	1 cut(s)	169
EcoRII	CCWGG	3 cut(s)	197, 245, 399
EcoRV	GATATC	1 cut(s)	280
EcoT14I	CCWWGG	1 cut(s)	554
EcoT38I	GRGCYC	4 cut(s)	156, 172, 428, 515
ErhI	CCWWGG	1 cut(s)	554
Esp3I	CGTCTC	2 cut(s)	710, 773
FaeI	CATG	2 cut(s)	394, 922
FaiI	YATR	5 cut(s)	137, 392, 903, 920, 930
FaqI	GGGAC	1 cut(s)	251
FatI	CATG	2 cut(s)	390, 918
FauI	CCCGC	6 cut(s)	336, 414, 494, 724, 947, 993
FokI	GGATG	4 cut(s)	485, 766, 845, 985
FriOI	GRGCYC	4 cut(s)	156, 172, 428, 515
FspBI	CTAG	1 cut(s)	44
GlaI	GCGC	4 cut(s)	235, 417, 490, 621
HaeIII	GGCC	5 cut(s)	62, 170, 530, 629, 671
HapII	CCGG	8 cut(s)	33, 166, 237, 289, 433, 508, 693, 746
HgaI	GACGC	2 cut(s)	335, 648
HhaI	GCGC	4 cut(s)	236, 418, 491, 622
Hin1I	GRCGYC	1 cut(s)	659
Hin1II	CATG	2 cut(s)	394, 922
Hin6I	GCGC	4 cut(s)	234, 416, 489, 620
HinP1I	GCGC	4 cut(s)	234, 416, 489, 620
HinfI	GANTC	4 cut(s)	377, 394, 548, 803
HpaII	CCGG	8 cut(s)	33, 166, 237, 289, 433, 508, 693, 746
HphI	GGTGA	4 cut(s)	361, 389, 760, 934
Hpy166II	GTNNAC	3 cut(s)	501, 525, 813
Hpy188I	TCNGA	5 cut(s)	123, 277, 463, 664, 1055
Hpy188III	TCNNGA	5 cut(s)	289, 386, 541, 981, 1043
Hpy8I	GTNNAC	3 cut(s)	501, 525, 813
Hpy99I	CGWCG	5 cut(s)	149, 351, 467, 536, 664
HpyAV	CCTTC	2 cut(s)	178, 881
HpyCH4IV	ACGT	2 cut(s)	366, 962
HpyCH4V	TGCA	4 cut(s)	68, 918, 969, 1020
HpyF3I	CTNAG	2 cut(s)	28, 675
HpySE526I	ACGT	2 cut(s)	366, 962
Hsp92I	GRCGYC	1 cut(s)	659
Hsp92II	CATG	2 cut(s)	394, 922
HspAI	GCGC	4 cut(s)	234, 416, 489, 620
Kpn2I	TCCGGA	1 cut(s)	288
KroI	GCCGGC	1 cut(s)	236
KroNI	GCCGGC	1 cut(s)	238
KspI	CCGCGG	1 cut(s)	648
Kzo9I	GATC	2 cut(s)	332, 590
LmnI	GCTCC	7 cut(s)	151, 245, 431, 510, 518, 742, 983
Lsp1109I	GCAGC	5 cut(s)	80, 625, 887, 896, 925
LweI	GCATC	2 cut(s)	463, 659
MaeI	CTAG	1 cut(s)	44
MaeII	ACGT	2 cut(s)	366, 962
MaeIII	GTNAC	2 cut(s)	362, 367
MalI	GATC	2 cut(s)	334, 592
MbiI	CCGCTC	1 cut(s)	1015
MboI	GATC	2 cut(s)	332, 590
MboII	GAAGA	8 cut(s)	593, 677, 695, 698, 788, 863, 869, 896
MfeI	CAATTG	1 cut(s)	1006
MhlI	GDGCHC	6 cut(s)	156, 172, 428, 515, 960, 980
MluCI	AATT	3 cut(s)	1006, 1024, 1038
MlyI	GAGTC	4 cut(s)	386, 388, 542, 812
MmeI	TCCRAC	5 cut(s)	101, 486, 558, 642, 753
MroI	TCCGGA	1 cut(s)	288
MroNI	GCCGGC	1 cut(s)	236
MroXI	GAANNNNTTC	1 cut(s)	206
MspA1I	CMGCKG	5 cut(s)	632, 647, 674, 878, 1000
MspI	CCGG	8 cut(s)	33, 166, 237, 289, 433, 508, 693, 746
MspR9I	CCNGG	6 cut(s)	167, 199, 247, 401, 433, 694
MunI	CAATTG	1 cut(s)	1006
MvaI	CCWGG	3 cut(s)	199, 247, 401
MvnI	CGCG	9 cut(s)	144, 234, 331, 346, 351, 418, 489, 542, 647
NaeI	GCCGGC	1 cut(s)	238
NciI	CCSGG	3 cut(s)	167, 433, 694
NdeII	GATC	2 cut(s)	332, 590
NgoMIV	GCCGGC	1 cut(s)	236
NlaIII	CATG	2 cut(s)	394, 922
NlaIV	GGNNCC	8 cut(s)	63, 125, 153, 170, 241, 427, 744, 995
NmuCI	GTSAC	1 cut(s)	367
NruI	TCGCGA	1 cut(s)	542
PcsI	WCGNNNNNNNCGW	3 cut(s)	372, 599, 812
PdiI	GCCGGC	1 cut(s)	238
PdmI	GAANNNNTTC	1 cut(s)	206
PflFI	GACNNNGTC	1 cut(s)	536
PleI	GAGTC	4 cut(s)	385, 388, 542, 811
PpsI	GAGTC	4 cut(s)	385, 388, 542, 811
Psp124BI	GAGCTC	1 cut(s)	515
Psp6I	CCWGG	3 cut(s)	197, 245, 399
PspGI	CCWGG	3 cut(s)	197, 245, 399
PspN4I	GGNNCC	8 cut(s)	63, 125, 153, 170, 241, 427, 744, 995
PspOMI	GGGCCC	1 cut(s)	168
PspPI	GGNCC	5 cut(s)	61, 123, 168, 169, 994
PstI	CTGCAG	2 cut(s)	70, 971
PsyI	GACNNNGTC	1 cut(s)	536
RruI	TCGCGA	1 cut(s)	542
RsaI	GTAC	2 cut(s)	736, 812
RsaNI	GTAC	2 cut(s)	735, 811
SacI	GAGCTC	1 cut(s)	515
SacII	CCGCGG	1 cut(s)	648
Sau3AI	GATC	2 cut(s)	332, 590
Sau96I	GGNCC	5 cut(s)	61, 123, 168, 169, 994
SchI	GAGTC	4 cut(s)	386, 388, 542, 812
ScrFI	CCNGG	6 cut(s)	167, 199, 247, 401, 433, 694
SduI	GDGCHC	6 cut(s)	156, 172, 428, 515, 960, 980
SetI	ASST	9 cut(s)	275, 301, 369, 471, 515, 640, 812, 965, 990
SfaNI	GCATC	2 cut(s)	463, 659
SfcI	CTRYAG	2 cut(s)	66, 967
Sfr303I	CCGCGG	1 cut(s)	648
SgrBI	CCGCGG	1 cut(s)	648
SinI	GGWCC	2 cut(s)	123, 994
Sse9I	AATT	3 cut(s)	1006, 1024, 1038
SspMI	CTAG	1 cut(s)	44
SstI	GAGCTC	1 cut(s)	515
StyD4I	CCNGG	6 cut(s)	165, 197, 245, 399, 431, 692
StyI	CCWWGG	1 cut(s)	554
TaiI	ACGT	2 cut(s)	369, 965
TaqI	TCGA	4 cut(s)	132, 387, 494, 806
TasI	AATT	3 cut(s)	1006, 1024, 1038
TseFI	GTSAC	1 cut(s)	367
TseI	GCWGC	5 cut(s)	68, 638, 875, 909, 938
Tsp45I	GTSAC	1 cut(s)	367
TspDTI	ATGAA	1 cut(s)	1018
TspGWI	ACGGA	6 cut(s)	247, 251, 447, 505, 700, 797
Tth111I	GACNNNGTC	1 cut(s)	536
VpaK11BI	GGWCC	2 cut(s)	123, 994
XapI	RAATTY	1 cut(s)	1038
XmnI	GAANNNNTTC	1 cut(s)	206
XspI	CTAG	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.