Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001246.1

Orthogroup ID

OG0004288

Physical Location & Seq

Genomic Coordinates Reverse (-)

6463 .. 7527

Gene Structure 1065 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001246.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

atggaaggtcaccggaggctaacgcttttcgagcagatgtcagcaagtgcggacggcagagcattagccggactgagcctcgaagacgtcttatccccagcagcagcgcccaaagaacccccgccggctccggtgataccggcgtctatttcgggtctgaccctccttgacattatccgcaacgaggagcccaaatcgtataaggccctgatcggaaagaaagacaagaagccgtggaagacgttcaaagaccgcctccgcctcaagaaagccagcgccgcctgggcctccaacgcccaagtccccacctccgacgtccccgtccggaacaaccaccgccagccaggctacagccacagccgatcccgcaactccatccgttacatcacgccggagccgcagccgatggctgagcccggatcaaacgccgacaccagcaaccgaccgccgcaggcaggctccgcgccgagtttcaatcggcggagctccgtgcggttcgcgtcggacatcgagtcgccgcggcccaagctggagacggcgatcagcgaggagaggtcgctgtcggcgagggaggcggtggcggcacaggaggctgccgaggcctccgccgcagcagcggcggctgaggcggccgcggcggaggaggaggcagagagagaaggagagggagacggcgcatcttcgtcggagaaggcttccggtgaaacggtaacgtcgccggaggcggaggcggagccggtgaggatgtcactgatggacttgttggaggagacggacaggcagatggggctggagggagggaggtacaccatggacgaagaggaagaagaggaggaggaggaggaggaagtggaagaggtggaggaggtgaaggaggtggaagagccggaagaagctgggggagtggagcacagttgctgcgtgtgcatggtgaggcataaaggcgcggcgtttatcccctgcgggcataccttttgccggatgtgctccagagagttgtgggtgcagagagggaactgccccctctgcaacaatttcatcttggaaattctggacattttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

354

Amino Acids

38.59

Weight (kDa)

4.77

Isoelectric Point (pI)

66.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25030 AT3G25030 AT3G25030 AT3G25030 AT4G03965 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G22250
fragaria_vesca	FvH4_2g18810
malus_domestica	MD05G1174100.v1.1 MD10G1163000.v1.1
prunus_persica	Prupe.8G201500_v2.0.a1 Prupe.8G201500_v2.0.a1
pyrus_communis	pycom05g16090
rosa_chinensis	RchiOBHm_Chr6g0284561
rosa_laevigata	RLG00000012738
rosa_multiflora	Rmu_sc0001246.1_g000002 Rmu_sc0001246.1_g000003 Rmu_sc0005257.1_g000005
rosa_roxburghii	Rroxscaffold_7G00184620
rosa_rugosa	Rorug06G0164200
rosa_samantha	Rh6BG277300 Rh6CG279500 Rh6DG271900
rosa_wichuraiana	Rw6G023820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	320
AatII	GACGTC	2 cut(s)	90, 318
AccII	CGCG	5 cut(s)	464, 500, 520, 635, 947
AccIII	TCCGGA	1 cut(s)	324
AclWI	GGATC	2 cut(s)	357, 427
AcoI	YGGCCR	1 cut(s)	630
AcsI	RAATTY	1 cut(s)	1047
AcyI	GRCGYC	3 cut(s)	87, 143, 315
AfaI	GTAC	1 cut(s)	806
AfiI	CCNNNNNNNGG	3 cut(s)	184, 455, 978
AgsI	TTSAA	2 cut(s)	247, 475
AhdI	GACNNNNNGTC	1 cut(s)	511
AjnI	CCWGG	2 cut(s)	281, 343
AluBI	AGCT	3 cut(s)	486, 529, 896
AluI	AGCT	3 cut(s)	486, 529, 896
Alw21I	GWGCWC	3 cut(s)	488, 912, 989
Alw26I	GTCTC	3 cut(s)	527, 663, 764
AlwI	GGATC	2 cut(s)	357, 427
AlwNI	CAGNNNCTG	1 cut(s)	918
Aor13HI	TCCGGA	1 cut(s)	324
AoxI	GGCC	5 cut(s)	204, 285, 521, 600, 630
ApeKI	GCWGC	7 cut(s)	101, 104, 400, 593, 611, 614, 918
ApoI	RAATTY	1 cut(s)	1047
Asp700I	GAANNNNTTC	1 cut(s)	242
AspLEI	GCGC	5 cut(s)	109, 278, 466, 677, 947
AspS9I	GGNCC	3 cut(s)	205, 285, 522
AsuC2I	CCSGG	1 cut(s)	417
AsuHPI	GGTGA	5 cut(s)	145, 713, 751, 880, 943
BaeI	ACNNNNGTAYC	2 cut(s)	128, 161
BanII	GRGCYC	3 cut(s)	192, 417, 488
BbsI	GAAGAC	2 cut(s)	90, 245
Bbv12I	GWGCWC	3 cut(s)	488, 912, 989
BbvCI	CCTCAGC	1 cut(s)	624
BbvI	GCAGC	7 cut(s)	113, 116, 412, 580, 623, 626, 905
BccI	CCATC	4 cut(s)	383, 400, 748, 778
BceAI	ACGGC	4 cut(s)	70, 217, 552, 688
BcgI	CGANNNNNNTGC	2 cut(s)	666, 700
BciT130I	CCWGG	2 cut(s)	283, 345
BcnI	CCSGG	1 cut(s)	417
BcoDI	GTCTC	3 cut(s)	527, 663, 764
BfmI	CTRYAG	1 cut(s)	349
BfoI	RGCGCY	2 cut(s)	110, 279
BglI	GCCNNNNNGGC	2 cut(s)	284, 345
BlpI	GCTNAGC	1 cut(s)	411
Bme1390I	CCNGG	3 cut(s)	283, 345, 417
BmeRI	GACNNNNNGTC	1 cut(s)	511
BmgT120I	GGNCC	3 cut(s)	205, 285, 522
BmiI	GGNNCC	5 cut(s)	129, 189, 396, 460, 735
BmrFI	CCNGG	3 cut(s)	283, 345, 417
BmsI	GCATC	1 cut(s)	686
BpiI	GAAGAC	2 cut(s)	90, 245
BpmI	CTGGAG	3 cut(s)	551, 812, 973
Bpu10I	CCTNAGC	1 cut(s)	624
Bpu1102I	GCTNAGC	1 cut(s)	411
BpuEI	CTTGAG	1 cut(s)	248
BpuMI	CCSGG	1 cut(s)	417
BsaHI	GRCGYC	3 cut(s)	87, 143, 315
BsaJI	CCNNGG	6 cut(s)	233, 282, 518, 597, 633, 810
BsaWI	WCCGGW	4 cut(s)	12, 130, 324, 698
Bsc4I	CCNNNNNNNGG	3 cut(s)	184, 455, 978
Bse118I	RCCGGY	3 cut(s)	124, 139, 736
BseAI	TCCGGA	1 cut(s)	324
BseBI	CCWGG	2 cut(s)	283, 345
BseDI	CCNNGG	6 cut(s)	233, 282, 518, 597, 633, 810
BseGI	GGATG	3 cut(s)	375, 750, 987
BseLI	CCNNNNNNNGG	3 cut(s)	184, 455, 978
BseMII	CTCAG	3 cut(s)	65, 402, 615
BseX3I	CGGCCG	1 cut(s)	630
BseXI	GCAGC	7 cut(s)	113, 116, 412, 580, 623, 626, 905
BseYI	CCCAGC	2 cut(s)	97, 896
BsgI	GTGCAG	1 cut(s)	1025
Bsh1236I	CGCG	5 cut(s)	464, 500, 520, 635, 947
Bsh1285I	CGRYCG	2 cut(s)	446, 633
BshFI	GGCC	5 cut(s)	206, 287, 523, 602, 632
BsiEI	CGRYCG	2 cut(s)	446, 633
BsiHKAI	GWGCWC	3 cut(s)	488, 912, 989
BslFI	GGGAC	2 cut(s)	287, 302
BslI	CCNNNNNNNGG	3 cut(s)	184, 455, 978
BsmAI	GTCTC	3 cut(s)	527, 663, 764
BsmBI	CGTCTC	3 cut(s)	527, 663, 764
BsmFI	GGGAC	2 cut(s)	287, 302
BsnI	GGCC	5 cut(s)	206, 287, 523, 602, 632
Bsp1286I	GDGCHC	5 cut(s)	192, 417, 488, 912, 989
Bsp13I	TCCGGA	1 cut(s)	324
Bsp143I	GATC	4 cut(s)	210, 362, 419, 540
Bsp1720I	GCTNAGC	1 cut(s)	411
Bsp19I	CCATGG	1 cut(s)	810
BspANI	GGCC	5 cut(s)	206, 287, 523, 602, 632
BspCNI	CTCAG	3 cut(s)	66, 403, 616
BspEI	TCCGGA	1 cut(s)	324
BspFNI	CGCG	5 cut(s)	464, 500, 520, 635, 947
BspLI	GGNNCC	5 cut(s)	129, 189, 396, 460, 735
BspPI	GGATC	2 cut(s)	357, 427
BspQI	GCTCTTC	1 cut(s)	876
BsrFI	RCCGGY	3 cut(s)	124, 139, 736
BssAI	RCCGGY	3 cut(s)	124, 139, 736
BssECI	CCNNGG	6 cut(s)	233, 282, 518, 597, 633, 810
BssMI	GATC	4 cut(s)	210, 362, 419, 540
BssNI	GRCGYC	3 cut(s)	87, 143, 315
BssT1I	CCWWGG	1 cut(s)	810
Bst2UI	CCWGG	2 cut(s)	283, 345
Bst4CI	ACNGT	2 cut(s)	709, 914
Bst6I	CTCTTC	4 cut(s)	813, 822, 849, 876
BstACI	GRCGYC	3 cut(s)	87, 143, 315
BstC8I	GCNNGC	6 cut(s)	126, 274, 341, 453, 457, 965
BstDEI	CTNAG	3 cut(s)	74, 411, 624
BstDSI	CCRYGG	4 cut(s)	233, 518, 633, 810
BstEII	GGTNACC	1 cut(s)	8
BstF5I	GGATG	3 cut(s)	375, 750, 987
BstFNI	CGCG	5 cut(s)	464, 500, 520, 635, 947
BstH2I	RGCGCY	2 cut(s)	110, 279
BstHHI	GCGC	5 cut(s)	109, 278, 466, 677, 947
BstKTI	GATC	4 cut(s)	213, 365, 422, 543
BstMAI	GTCTC	3 cut(s)	527, 663, 764
BstMBI	GATC	4 cut(s)	210, 362, 419, 540
BstMCI	CGRYCG	2 cut(s)	446, 633
BstNI	CCWGG	2 cut(s)	283, 345
BstPI	GGTNACC	1 cut(s)	8
BstSCI	CCNGG	3 cut(s)	281, 343, 415
BstSFI	CTRYAG	1 cut(s)	349
BstUI	CGCG	5 cut(s)	464, 500, 520, 635, 947
BstV1I	GCAGC	7 cut(s)	113, 116, 412, 580, 623, 626, 905
BstV2I	GAAGAC	2 cut(s)	90, 245
BstZI	CGGCCG	1 cut(s)	630
BsuRI	GGCC	5 cut(s)	206, 287, 523, 602, 632
BtgI	CCRYGG	4 cut(s)	233, 518, 633, 810
BtsCI	GGATG	3 cut(s)	375, 750, 987
BtsIMutI	CAGTG	1 cut(s)	749
Cac8I	GCNNGC	6 cut(s)	126, 274, 341, 453, 457, 965
CaiI	CAGNNNCTG	1 cut(s)	918
CciNI	GCGGCCGC	1 cut(s)	630
CfoI	GCGC	5 cut(s)	109, 278, 466, 677, 947
Cfr10I	RCCGGY	3 cut(s)	124, 139, 736
Cfr13I	GGNCC	3 cut(s)	205, 285, 522
Cfr42I	CCGCGG	2 cut(s)	521, 636
CseI	GACGC	2 cut(s)	132, 489
Csp6I	GTAC	1 cut(s)	805
CviAII	CATG	2 cut(s)	811, 928
CviQI	GTAC	1 cut(s)	805
DdeI	CTNAG	3 cut(s)	74, 411, 624
DpnI	GATC	4 cut(s)	212, 364, 421, 542
DpnII	GATC	4 cut(s)	210, 362, 419, 540
DrdI	GACNNNNNNGTC	1 cut(s)	320
DriI	GACNNNNNGTC	1 cut(s)	511
DseDI	GACNNNNNNGTC	1 cut(s)	320
EaeI	YGGCCR	1 cut(s)	630
EagI	CGGCCG	1 cut(s)	630
Eam1104I	CTCTTC	4 cut(s)	813, 822, 849, 876
Eam1105I	GACNNNNNGTC	1 cut(s)	511
EarI	CTCTTC	4 cut(s)	813, 822, 849, 876
EciI	GGCGGA	6 cut(s)	248, 496, 595, 653, 740, 746
Ecl136II	GAGCTC	1 cut(s)	486
EclXI	CGGCCG	1 cut(s)	630
Eco130I	CCWWGG	1 cut(s)	810
Eco147I	AGGCCT	1 cut(s)	602
Eco24I	GRGCYC	3 cut(s)	192, 417, 488
Eco52I	CGGCCG	1 cut(s)	630
Eco53kI	GAGCTC	1 cut(s)	486
Eco91I	GGTNACC	1 cut(s)	8
EcoICRI	GAGCTC	1 cut(s)	486
EcoO109I	RGGNCCY	1 cut(s)	205
EcoO65I	GGTNACC	1 cut(s)	8
EcoRII	CCWGG	2 cut(s)	281, 343
EcoT14I	CCWWGG	1 cut(s)	810
EcoT38I	GRGCYC	3 cut(s)	192, 417, 488
ErhI	CCWWGG	1 cut(s)	810
Esp3I	CGTCTC	3 cut(s)	527, 663, 764
FaeI	CATG	2 cut(s)	814, 931
FaiI	YATR	5 cut(s)	201, 812, 929, 939, 969
FaqI	GGGAC	2 cut(s)	287, 302
FatI	CATG	2 cut(s)	810, 927
FauI	CCCGC	3 cut(s)	129, 374, 956
FokI	GGATG	3 cut(s)	362, 757, 994
FriOI	GRGCYC	3 cut(s)	192, 417, 488
GlaI	GCGC	5 cut(s)	108, 277, 465, 676, 946
GsaI	CCCAGC	2 cut(s)	101, 900
GsuI	CTGGAG	3 cut(s)	551, 812, 973
HaeII	RGCGCY	2 cut(s)	110, 279
HaeIII	GGCC	5 cut(s)	206, 287, 523, 602, 632
HgaI	GACGC	2 cut(s)	132, 489
HhaI	GCGC	5 cut(s)	109, 278, 466, 677, 947
Hin1I	GRCGYC	3 cut(s)	87, 143, 315
Hin1II	CATG	2 cut(s)	814, 931
Hin6I	GCGC	5 cut(s)	107, 276, 464, 675, 945
HinP1I	GCGC	5 cut(s)	107, 276, 464, 675, 945
HinfI	GANTC	1 cut(s)	512
HphI	GGTGA	5 cut(s)	145, 713, 751, 880, 943
Hpy166II	GTNNAC	1 cut(s)	807
Hpy188I	TCNGA	6 cut(s)	159, 215, 313, 505, 688, 1064
Hpy188III	TCNNGA	4 cut(s)	265, 325, 990, 1052
Hpy8I	GTNNAC	1 cut(s)	807
Hpy99I	CGWCG	4 cut(s)	317, 505, 688, 718
HpyAV	CCTTC	3 cut(s)	653, 685, 865
HpyCH4III	ACNGT	2 cut(s)	709, 914
HpyCH4IV	ACGT	4 cut(s)	87, 242, 315, 713
HpyCH4V	TGCA	3 cut(s)	927, 1006, 1029
HpyF3I	CTNAG	3 cut(s)	74, 411, 624
HpySE526I	ACGT	4 cut(s)	87, 242, 315, 713
Hsp92I	GRCGYC	3 cut(s)	87, 143, 315
Hsp92II	CATG	2 cut(s)	814, 931
HspAI	GCGC	5 cut(s)	107, 276, 464, 675, 945
Kpn2I	TCCGGA	1 cut(s)	324
KroI	GCCGGC	1 cut(s)	124
KroNI	GCCGGC	1 cut(s)	126
KspI	CCGCGG	2 cut(s)	521, 636
Kzo9I	GATC	4 cut(s)	210, 362, 419, 540
LguI	GCTCTTC	1 cut(s)	876
LmnI	GCTCC	9 cut(s)	133, 187, 394, 464, 483, 491, 733, 907, 992
Lsp1109I	GCAGC	7 cut(s)	113, 116, 412, 580, 623, 626, 905
LweI	GCATC	1 cut(s)	686
MaeII	ACGT	4 cut(s)	87, 242, 315, 713
MaeIII	GTNAC	4 cut(s)	8, 380, 709, 747
MalI	GATC	4 cut(s)	212, 364, 421, 542
MboI	GATC	4 cut(s)	210, 362, 419, 540
MboII	GAAGA	9 cut(s)	95, 250, 672, 830, 836, 839, 866, 893, 902
MhlI	GDGCHC	5 cut(s)	192, 417, 488, 912, 989
MluCI	AATT	2 cut(s)	1033, 1047
MlyI	GAGTC	1 cut(s)	521
MmeI	TCCRAC	5 cut(s)	315, 336, 483, 666, 744
MroI	TCCGGA	1 cut(s)	324
MroNI	GCCGGC	1 cut(s)	124
MroXI	GAANNNNTTC	1 cut(s)	242
MspA1I	CMGCKG	3 cut(s)	520, 617, 635
MspR9I	CCNGG	3 cut(s)	283, 345, 417
MvaI	CCWGG	2 cut(s)	283, 345
MvnI	CGCG	5 cut(s)	464, 500, 520, 635, 947
NaeI	GCCGGC	1 cut(s)	126
NciI	CCSGG	1 cut(s)	417
NcoI	CCATGG	1 cut(s)	810
NdeII	GATC	4 cut(s)	210, 362, 419, 540
NgoMIV	GCCGGC	1 cut(s)	124
NlaIII	CATG	2 cut(s)	814, 931
NlaIV	GGNNCC	5 cut(s)	129, 189, 396, 460, 735
NmeAIII	GCCGAG	2 cut(s)	492, 622
NmuCI	GTSAC	2 cut(s)	8, 747
NotI	GCGGCCGC	1 cut(s)	630
PceI	AGGCCT	1 cut(s)	602
PciSI	GCTCTTC	1 cut(s)	876
PcsI	WCGNNNNNNNCGW	1 cut(s)	563
PdiI	GCCGGC	1 cut(s)	126
PdmI	GAANNNNTTC	1 cut(s)	242
PleI	GAGTC	1 cut(s)	520
PpsI	GAGTC	1 cut(s)	520
Psp124BI	GAGCTC	1 cut(s)	488
Psp6I	CCWGG	2 cut(s)	281, 343
PspEI	GGTNACC	1 cut(s)	8
PspFI	CCCAGC	2 cut(s)	97, 896
PspGI	CCWGG	2 cut(s)	281, 343
PspN4I	GGNNCC	5 cut(s)	129, 189, 396, 460, 735
PspPI	GGNCC	3 cut(s)	205, 285, 522
PstNI	CAGNNNCTG	1 cut(s)	918
RsaI	GTAC	1 cut(s)	806
RsaNI	GTAC	1 cut(s)	805
SacI	GAGCTC	1 cut(s)	488
SacII	CCGCGG	2 cut(s)	521, 636
SapI	GCTCTTC	1 cut(s)	876
Sau3AI	GATC	4 cut(s)	210, 362, 419, 540
Sau96I	GGNCC	3 cut(s)	205, 285, 522
SchI	GAGTC	1 cut(s)	521
ScrFI	CCNGG	3 cut(s)	283, 345, 417
SduI	GDGCHC	5 cut(s)	192, 417, 488, 912, 989
SfaNI	GCATC	1 cut(s)	686
SfcI	CTRYAG	1 cut(s)	349
Sfr303I	CCGCGG	2 cut(s)	521, 636
SgrBI	CCGCGG	2 cut(s)	521, 636
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
Sse9I	AATT	2 cut(s)	1033, 1047
SseBI	AGGCCT	1 cut(s)	602
SstI	GAGCTC	1 cut(s)	488
StuI	AGGCCT	1 cut(s)	602
StyD4I	CCNGG	3 cut(s)	281, 343, 415
StyI	CCWWGG	1 cut(s)	810
TaaI	ACNGT	2 cut(s)	709, 914
TaiI	ACGT	4 cut(s)	90, 245, 318, 716
TaqI	TCGA	3 cut(s)	30, 81, 510
TasI	AATT	2 cut(s)	1033, 1047
TscAI	CASTG	1 cut(s)	756
TseFI	GTSAC	2 cut(s)	8, 747
TseI	GCWGC	7 cut(s)	101, 104, 400, 593, 611, 614, 918
Tsp45I	GTSAC	2 cut(s)	8, 747
TspDTI	ATGAA	1 cut(s)	1027
TspGWI	ACGGA	3 cut(s)	368, 478, 788
TspRI	CASTG	1 cut(s)	756
XapI	RAATTY	1 cut(s)	1047
XmnI	GAANNNNTTC	1 cut(s)	242
ZraI	GACGTC	2 cut(s)	88, 316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.