Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004288

Physical Location & Seq

Genomic Coordinates Reverse (-)

11767455 .. 11768563

Gene Structure 1109 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G22250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGATGAGTGAACTCGATCTCGGAACGAGTCAGAGGATGACGGAAACACACCGCACGACGACGACGTTTCTTGATTTGCTCCGACGACAGATGAGCGGTCACGATCTCACCAGAAGGAAACGGACGTTAAAAGAACGGTTGAGATTCAAATGCATCGGATGCTGTGGTCCAACCTGGAATCTCCGTCTAACTAACAACACCACTCTTCACAGTCCAACCTCAAGAGACGACGAAATCGAAGAGTTACAAATTGAAACCGGACTCGTTCTCGAATCGGATCATGGATCGGGTACGGGTATGAATCTCGCGACAGCGTTAGAAGCGGAGAGGTATAACCGTGGAGAATCGACGGAGGCGGAGGCAGATATGACGCCGAGGAGAGTTTCGTTGATGAGATTGTTGGAAGAGACGGCGGAGAAAATCGTTGATGACGACGGGAAAGAAACGGAGATATTAACGGCGTCTATTGGGACGTTAACGGGTAATGATTCGGTGTGTTGCGTGTGTATGGGAAGAAAGAAAGGCGCTGCGTTTATTCCATGTGGTCATACTTTTTGCAGAGTGTGCTCTAGAGAATTGTGGCTGAACCGTGGATCGTGTCCTCTTTGTAACCGTCCGATCATTGAGATACTCGATATTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

214

Amino Acids

24.06

Weight (kDa)

5.8

Isoelectric Point (pI)

48.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	163 - 209	4.6e-12	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	166 - 203	1.5e-06	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	166 - 203	1.6e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25030 AT3G25030 AT3G25030 AT3G25030 AT4G03965 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G22250
fragaria_vesca	FvH4_2g18810
malus_domestica	MD05G1174100.v1.1 MD10G1163000.v1.1
prunus_persica	Prupe.8G201500_v2.0.a1 Prupe.8G201500_v2.0.a1
pyrus_communis	pycom05g16090
rosa_chinensis	RchiOBHm_Chr6g0284561
rosa_laevigata	RLG00000012738
rosa_multiflora	Rmu_sc0001246.1_g000002 Rmu_sc0001246.1_g000003 Rmu_sc0005257.1_g000005
rosa_roxburghii	Rroxscaffold_7G00184620
rosa_rugosa	Rorug06G0164200
rosa_samantha	Rh6BG277300 Rh6CG279500 Rh6DG271900
rosa_wichuraiana	Rw6G023820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	96
AccII	CGCG	1 cut(s)	308
AciI	CCGC	5 cut(s)	52, 96, 323, 356, 413
AclWI	GGATC	3 cut(s)	285, 292, 601
AcyI	GRCGYC	2 cut(s)	371, 461
AfaI	GTAC	1 cut(s)	292
AgsI	TTSAA	2 cut(s)	148, 254
AjnI	CCWGG	1 cut(s)	173
Alw21I	GWGCWC	1 cut(s)	569
Alw26I	GTCTC	2 cut(s)	219, 401
AlwI	GGATC	3 cut(s)	285, 292, 601
ApeKI	GCWGC	1 cut(s)	527
AspLEI	GCGC	1 cut(s)	527
AspS9I	GGNCC	1 cut(s)	167
AsuHPI	GGTGA	1 cut(s)	100
AvaII	GGWCC	1 cut(s)	167
Bbv12I	GWGCWC	1 cut(s)	569
BbvI	GCAGC	1 cut(s)	514
BceAI	ACGGC	2 cut(s)	426, 474
BciT130I	CCWGG	1 cut(s)	175
BcoDI	GTCTC	2 cut(s)	219, 401
BfaI	CTAG	1 cut(s)	570
BfoI	RGCGCY	1 cut(s)	528
BisI	GCNGC	1 cut(s)	528
BlsI	GCNGC	1 cut(s)	529
Bme1390I	CCNGG	1 cut(s)	175
Bme18I	GGWCC	1 cut(s)	167
BmgT120I	GGNCC	1 cut(s)	167
BmrFI	CCNGG	1 cut(s)	175
BmsI	GCATC	2 cut(s)	149, 162
BpuEI	CTTGAG	1 cut(s)	205
BsaHI	GRCGYC	2 cut(s)	371, 461
BsaJI	CCNNGG	3 cut(s)	337, 374, 589
BsaWI	WCCGGW	1 cut(s)	257
BseBI	CCWGG	1 cut(s)	175
BseDI	CCNNGG	3 cut(s)	337, 374, 589
BseGI	GGATG	2 cut(s)	42, 164
BseRI	GAGGAG	1 cut(s)	391
BseXI	GCAGC	1 cut(s)	514
Bsh1236I	CGCG	1 cut(s)	308
BsiHKAI	GWGCWC	1 cut(s)	569
BsiSI	CCGG	1 cut(s)	258
BslFI	GGGAC	1 cut(s)	484
BsmAI	GTCTC	2 cut(s)	219, 401
BsmBI	CGTCTC	2 cut(s)	219, 401
BsmFI	GGGAC	1 cut(s)	484
Bsp1286I	GDGCHC	1 cut(s)	569
Bsp143I	GATC	6 cut(s)	16, 103, 277, 284, 593, 618
Bsp68I	TCGCGA	1 cut(s)	308
BspACI	CCGC	5 cut(s)	52, 96, 323, 356, 413
BspFNI	CGCG	1 cut(s)	308
BspPI	GGATC	3 cut(s)	285, 292, 601
BsrBI	CCGCTC	1 cut(s)	96
BssECI	CCNNGG	3 cut(s)	337, 374, 589
BssMI	GATC	6 cut(s)	16, 103, 277, 284, 593, 618
BssNI	GRCGYC	2 cut(s)	371, 461
Bst2UI	CCWGG	1 cut(s)	175
Bst4CI	ACNGT	5 cut(s)	138, 212, 338, 590, 614
Bst6I	CTCTTC	3 cut(s)	210, 234, 399
BstACI	GRCGYC	2 cut(s)	371, 461
BstAPI	GCANNNNNTGC	2 cut(s)	159, 564
BstDSI	CCRYGG	2 cut(s)	337, 589
BstF5I	GGATG	2 cut(s)	42, 164
BstFNI	CGCG	1 cut(s)	308
BstH2I	RGCGCY	1 cut(s)	528
BstHHI	GCGC	1 cut(s)	527
BstKTI	GATC	6 cut(s)	19, 106, 280, 287, 596, 621
BstMAI	GTCTC	2 cut(s)	219, 401
BstMBI	GATC	6 cut(s)	16, 103, 277, 284, 593, 618
BstMWI	GCNNNNNNNGC	3 cut(s)	159, 320, 564
BstNI	CCWGG	1 cut(s)	175
BstSCI	CCNGG	1 cut(s)	173
BstUI	CGCG	1 cut(s)	308
BstV1I	GCAGC	1 cut(s)	514
BtgI	CCRYGG	2 cut(s)	337, 589
BtsCI	GGATG	2 cut(s)	42, 164
BtuMI	TCGCGA	1 cut(s)	308
CfoI	GCGC	1 cut(s)	527
Cfr13I	GGNCC	1 cut(s)	167
CseI	GACGC	2 cut(s)	379, 450
Csp6I	GTAC	1 cut(s)	291
CviAII	CATG	2 cut(s)	281, 540
CviJI	RGCY	1 cut(s)	583
CviKI_1	RGCY	1 cut(s)	583
CviQI	GTAC	1 cut(s)	291
DpnI	GATC	6 cut(s)	18, 105, 279, 286, 595, 620
DpnII	GATC	6 cut(s)	16, 103, 277, 284, 593, 618
Eam1104I	CTCTTC	3 cut(s)	210, 234, 399
EarI	CTCTTC	3 cut(s)	210, 234, 399
EciI	GGCGGA	2 cut(s)	371, 428
Eco47I	GGWCC	1 cut(s)	167
EcoRII	CCWGG	1 cut(s)	173
EcoT22I	ATGCAT	1 cut(s)	155
Esp3I	CGTCTC	2 cut(s)	219, 401
FaeI	CATG	2 cut(s)	284, 543
FaiI	YATR	7 cut(s)	282, 299, 333, 368, 509, 541, 549
FaqI	GGGAC	1 cut(s)	484
FatI	CATG	2 cut(s)	280, 539
Fnu4HI	GCNGC	1 cut(s)	528
FokI	GGATG	2 cut(s)	49, 171
Fsp4HI	GCNGC	1 cut(s)	528
FspBI	CTAG	1 cut(s)	570
GlaI	GCGC	1 cut(s)	526
GluI	GCNGC	1 cut(s)	528
HaeII	RGCGCY	1 cut(s)	528
HapII	CCGG	1 cut(s)	258
HgaI	GACGC	2 cut(s)	379, 450
HhaI	GCGC	1 cut(s)	527
Hin1I	GRCGYC	2 cut(s)	371, 461
Hin1II	CATG	2 cut(s)	284, 543
Hin6I	GCGC	1 cut(s)	525
HinP1I	GCGC	1 cut(s)	525
HincII	GTYRAC	1 cut(s)	477
HindII	GTYRAC	1 cut(s)	477
HinfI	GANTC	8 cut(s)	28, 144, 178, 261, 272, 301, 344, 488
HpaI	GTTAAC	1 cut(s)	477
HpaII	CCGG	1 cut(s)	258
HphI	GGTGA	1 cut(s)	100
Hpy166II	GTNNAC	2 cut(s)	11, 477
Hpy188I	TCNGA	7 cut(s)	23, 33, 83, 158, 277, 618, 644
Hpy188III	TCNNGA	6 cut(s)	71, 101, 222, 269, 307, 570
Hpy8I	GTNNAC	2 cut(s)	11, 477
Hpy99I	CGWCG	7 cut(s)	61, 64, 67, 87, 233, 352, 437
HpyAV	CCTTC	1 cut(s)	108
HpyCH4III	ACNGT	5 cut(s)	138, 212, 338, 590, 614
HpyCH4IV	ACGT	3 cut(s)	65, 125, 473
HpyCH4V	TGCA	2 cut(s)	153, 558
HpyF10VI	GCNNNNNNNGC	3 cut(s)	159, 320, 564
HpySE526I	ACGT	3 cut(s)	65, 125, 473
Hsp92I	GRCGYC	2 cut(s)	371, 461
Hsp92II	CATG	2 cut(s)	284, 543
HspAI	GCGC	1 cut(s)	525
KspAI	GTTAAC	1 cut(s)	477
Kzo9I	GATC	6 cut(s)	16, 103, 277, 284, 593, 618
LmnI	GCTCC	1 cut(s)	84
LpnPI	CCDG	4 cut(s)	124, 160, 187, 271
Lsp1109I	GCAGC	1 cut(s)	514
LweI	GCATC	2 cut(s)	149, 162
MaeI	CTAG	1 cut(s)	570
MaeII	ACGT	3 cut(s)	65, 125, 473
MaeIII	GTNAC	3 cut(s)	98, 243, 608
MalI	GATC	6 cut(s)	18, 105, 279, 286, 595, 620
MbiI	CCGCTC	1 cut(s)	96
MboI	GATC	6 cut(s)	16, 103, 277, 284, 593, 618
MboII	GAAGA	4 cut(s)	197, 251, 416, 525
MhlI	GDGCHC	1 cut(s)	569
MluCI	AATT	2 cut(s)	249, 575
MlyI	GAGTC	2 cut(s)	37, 255
MmeI	TCCRAC	4 cut(s)	106, 194, 239, 381
MnlI	CCTC	7 cut(s)	27, 229, 321, 346, 352, 369, 612
Mph1103I	ATGCAT	1 cut(s)	155
MseI	TTAA	3 cut(s)	128, 455, 476
MspI	CCGG	1 cut(s)	258
MspR9I	CCNGG	1 cut(s)	175
MvaI	CCWGG	1 cut(s)	175
MvnI	CGCG	1 cut(s)	308
MwoI	GCNNNNNNNGC	3 cut(s)	159, 320, 564
NdeII	GATC	6 cut(s)	16, 103, 277, 284, 593, 618
NlaIII	CATG	2 cut(s)	284, 543
NmeAIII	GCCGAG	1 cut(s)	399
NmuCI	GTSAC	1 cut(s)	98
NruI	TCGCGA	1 cut(s)	308
NsiI	ATGCAT	1 cut(s)	155
PcsI	WCGNNNNNNNCGW	3 cut(s)	62, 234, 429
PfeI	GAWTC	6 cut(s)	144, 178, 272, 301, 344, 488
PkrI	GCNGC	1 cut(s)	529
PleI	GAGTC	2 cut(s)	36, 255
PpsI	GAGTC	2 cut(s)	36, 255
Psp6I	CCWGG	1 cut(s)	173
PspGI	CCWGG	1 cut(s)	173
PspPI	GGNCC	1 cut(s)	167
RruI	TCGCGA	1 cut(s)	308
RsaI	GTAC	1 cut(s)	292
RsaNI	GTAC	1 cut(s)	291
SaqAI	TTAA	3 cut(s)	128, 455, 476
SatI	GCNGC	1 cut(s)	528
Sau3AI	GATC	6 cut(s)	16, 103, 277, 284, 593, 618
Sau96I	GGNCC	1 cut(s)	167
SchI	GAGTC	2 cut(s)	37, 255
ScrFI	CCNGG	1 cut(s)	175
SduI	GDGCHC	1 cut(s)	569
SetI	ASST	6 cut(s)	68, 128, 176, 221, 332, 476
SfaNI	GCATC	2 cut(s)	149, 162
SinI	GGWCC	1 cut(s)	167
SmlI	CTYRAG	1 cut(s)	220
SmoI	CTYRAG	1 cut(s)	220
Sse9I	AATT	2 cut(s)	249, 575
SsiI	CCGC	5 cut(s)	52, 96, 323, 356, 413
SspMI	CTAG	1 cut(s)	570
StyD4I	CCNGG	1 cut(s)	173
TaaI	ACNGT	5 cut(s)	138, 212, 338, 590, 614
TaiI	ACGT	3 cut(s)	68, 128, 476
TaqI	TCGA	5 cut(s)	15, 237, 270, 347, 633
TasI	AATT	2 cut(s)	249, 575
TfiI	GAWTC	6 cut(s)	144, 178, 272, 301, 344, 488
Tru1I	TTAA	3 cut(s)	128, 455, 476
Tru9I	TTAA	3 cut(s)	128, 455, 476
TseFI	GTSAC	1 cut(s)	98
TseI	GCWGC	1 cut(s)	527
Tsp45I	GTSAC	1 cut(s)	98
TspDTI	ATGAA	1 cut(s)	314
TspGWI	ACGGA	5 cut(s)	56, 136, 173, 365, 461
VpaK11BI	GGWCC	1 cut(s)	167
XbaI	TCTAGA	1 cut(s)	569
XspI	CTAG	1 cut(s)	570
Zsp2I	ATGCAT	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.