Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0004288

Physical Location & Seq

Genomic Coordinates Reverse (-)

46499140 .. 46501756

Gene Structure 2617 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG271900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGAAGGTCACCGGAGGCTAACGCTTCTCGAGCAGATGTCAGCAAGTGCGGACGGCAGAGCATTAGCCGGACTGAGCCTCGAAGACGTCTTATCCCCAGCAGCAGCAGCAGCGCCCAAAGAACCCCCGCCGGCTCCGGTGATACCGGCGTCTATTTCGGGTCTGACCCTCCTTGACATTATCCGCAACGAGGAGCCCAAATCGTATAAGGCCTTGATCGGAAAGAAAGACAAGAAGCCGTGGAAGACGTTCAAAGACCGCCTCCGCCTCAAGAAAGCCAGCGCCGCCTGGGCCTCCAACGCCCAAGTCCCCACCTCCGACGTCCCCGTCCGGAACAACCACCACCACCGCCAGCCAGGCTACAGCCACAGCCGATCCCGCAACTCCATCCGTTACATCACGCCGGAGCCGCAGCCGATGGCTGAGCCCGGATCAAACGCCGACACCAGCAACCGACCTCCGCAGGCAGGCTCCGCGCCGAGTTTCAATCGGCGAAGCTCCGTGCGGTTCGCGTCGGACATCGAGTCGCCGCGGCCCAAGCTGGAGACGGCGATCAGCGAGGAGAGGTCGCTGTCGGCGAGGGAGGCGGTGGCGGCACAGGAGGCTGCCGAGGCCTCCGCCGCAGCAGCGGCGGCTGAGGCGGCAGCGGCGGAGGAGAAGGCAGAGAGAGAAGGAGAGGGAGACGGCTCATCTTCGTCGGAGAAGGCTTCCGGTGAAACGGTAACGTCGCCGGAGGCGGAGGCGGAGCCGGTGAGGATGTCGCTGATGGACTTGTTGGAGGAGACGGACAGGCAGATGGGGCTGGAGGGAGGGAGGTACACCATGGACGAAGAGGAAGAAGAGGAGGAGGAGGAGGAGGAGGAAGTGGAAGAGGTGGAGGAGGTGAAGGAGGTGGAAGAACCAGAAGAAGCTGGGGGAGTGGAGCACAGTTGCTGCGTGTGCATGGTGAGGCATAAAGGCGCGGCGTTTATCCCCTGCGGGCATACCTTTTGCCGGATGTGCTCCAGAGAGTTGTGGGTGCAGAGAGGGAACTGCCCCCTCTGCAACAATTTCATCTTGGAAATTCTGGACATTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

359

Amino Acids

39.12

Weight (kDa)

4.86

Isoelectric Point (pI)

66.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	308 - 352	7.9e-10	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	311 - 348	6.3e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25030 AT3G25030 AT3G25030 AT3G25030 AT4G03965 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G13100 AT4G22250
fragaria_vesca	FvH4_2g18810
malus_domestica	MD05G1174100.v1.1 MD10G1163000.v1.1
prunus_persica	Prupe.8G201500_v2.0.a1 Prupe.8G201500_v2.0.a1
pyrus_communis	pycom05g16090
rosa_chinensis	RchiOBHm_Chr6g0284561
rosa_laevigata	RLG00000012738
rosa_multiflora	Rmu_sc0001246.1_g000002 Rmu_sc0001246.1_g000003 Rmu_sc0005257.1_g000005
rosa_roxburghii	Rroxscaffold_7G00184620
rosa_rugosa	Rorug06G0164200
rosa_samantha	Rh6BG277300 Rh6CG279500 Rh6DG271900
rosa_wichuraiana	Rw6G023820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	326
AatII	GACGTC	2 cut(s)	90, 324
AccII	CGCG	4 cut(s)	476, 512, 532, 962
AccIII	TCCGGA	1 cut(s)	330
AclWI	GGATC	2 cut(s)	369, 439
AcsI	RAATTY	1 cut(s)	1062
AcyI	GRCGYC	3 cut(s)	87, 149, 321
AfaI	GTAC	1 cut(s)	818
AfiI	CCNNNNNNNGG	3 cut(s)	190, 467, 993
AgsI	TTSAA	2 cut(s)	253, 487
AhdI	GACNNNNNGTC	1 cut(s)	523
AjnI	CCWGG	2 cut(s)	287, 355
AluBI	AGCT	3 cut(s)	498, 541, 911
AluI	AGCT	3 cut(s)	498, 541, 911
Alw21I	GWGCWC	2 cut(s)	927, 1004
Alw26I	GTCTC	3 cut(s)	539, 675, 776
AlwI	GGATC	2 cut(s)	369, 439
AlwNI	CAGNNNCTG	1 cut(s)	933
Ama87I	CYCGRG	1 cut(s)	29
Aor13HI	TCCGGA	1 cut(s)	330
AoxI	GGCC	4 cut(s)	210, 291, 533, 612
ApoI	RAATTY	1 cut(s)	1062
Asp700I	GAANNNNTTC	1 cut(s)	248
AspLEI	GCGC	4 cut(s)	115, 284, 478, 962
AspS9I	GGNCC	2 cut(s)	291, 534
AsuC2I	CCSGG	1 cut(s)	429
AsuHPI	GGTGA	5 cut(s)	151, 725, 763, 895, 958
AvaI	CYCGRG	1 cut(s)	29
BaeI	ACNNNNGTAYC	2 cut(s)	134, 167
BanII	GRGCYC	2 cut(s)	198, 429
BbsI	GAAGAC	2 cut(s)	90, 251
Bbv12I	GWGCWC	2 cut(s)	927, 1004
BbvCI	CCTCAGC	1 cut(s)	636
BccI	CCATC	4 cut(s)	395, 412, 760, 790
BceAI	ACGGC	4 cut(s)	70, 223, 564, 700
BciT130I	CCWGG	2 cut(s)	289, 357
BcnI	CCSGG	1 cut(s)	429
BcoDI	GTCTC	3 cut(s)	539, 675, 776
BfmI	CTRYAG	1 cut(s)	361
BfoI	RGCGCY	2 cut(s)	116, 285
BglI	GCCNNNNNGGC	2 cut(s)	290, 357
BlpI	GCTNAGC	1 cut(s)	423
Bme1390I	CCNGG	3 cut(s)	289, 357, 429
BmeRI	GACNNNNNGTC	1 cut(s)	523
BmeT110I	CYCGRG	1 cut(s)	29
BmgT120I	GGNCC	2 cut(s)	291, 534
BmiI	GGNNCC	5 cut(s)	135, 195, 408, 472, 747
BmrFI	CCNGG	3 cut(s)	289, 357, 429
BpiI	GAAGAC	2 cut(s)	90, 251
BpmI	CTGGAG	3 cut(s)	563, 824, 988
Bpu10I	CCTNAGC	1 cut(s)	636
Bpu1102I	GCTNAGC	1 cut(s)	423
BpuEI	CTTGAG	1 cut(s)	254
BpuMI	CCSGG	1 cut(s)	429
BsaHI	GRCGYC	3 cut(s)	87, 149, 321
BsaJI	CCNNGG	5 cut(s)	239, 288, 530, 609, 822
BsaWI	WCCGGW	4 cut(s)	12, 136, 330, 710
Bsc4I	CCNNNNNNNGG	3 cut(s)	190, 467, 993
Bse118I	RCCGGY	3 cut(s)	130, 145, 748
BseAI	TCCGGA	1 cut(s)	330
BseBI	CCWGG	2 cut(s)	289, 357
BseDI	CCNNGG	5 cut(s)	239, 288, 530, 609, 822
BseGI	GGATG	3 cut(s)	387, 762, 1002
BseLI	CCNNNNNNNGG	3 cut(s)	190, 467, 993
BseMII	CTCAG	3 cut(s)	65, 414, 627
BseYI	CCCAGC	2 cut(s)	97, 911
BsgI	GTGCAG	1 cut(s)	1040
Bsh1236I	CGCG	4 cut(s)	476, 512, 532, 962
BshFI	GGCC	4 cut(s)	212, 293, 535, 614
BsiHKAI	GWGCWC	2 cut(s)	927, 1004
BsiHKCI	CYCGRG	1 cut(s)	29
BslFI	GGGAC	2 cut(s)	293, 308
BslI	CCNNNNNNNGG	3 cut(s)	190, 467, 993
BsmAI	GTCTC	3 cut(s)	539, 675, 776
BsmBI	CGTCTC	3 cut(s)	539, 675, 776
BsmFI	GGGAC	2 cut(s)	293, 308
BsnI	GGCC	4 cut(s)	212, 293, 535, 614
BsoBI	CYCGRG	1 cut(s)	29
Bsp1286I	GDGCHC	4 cut(s)	198, 429, 927, 1004
Bsp13I	TCCGGA	1 cut(s)	330
Bsp143I	GATC	4 cut(s)	216, 374, 431, 552
Bsp1720I	GCTNAGC	1 cut(s)	423
Bsp19I	CCATGG	1 cut(s)	822
BspANI	GGCC	4 cut(s)	212, 293, 535, 614
BspCNI	CTCAG	3 cut(s)	66, 415, 628
BspEI	TCCGGA	1 cut(s)	330
BspFNI	CGCG	4 cut(s)	476, 512, 532, 962
BspLI	GGNNCC	5 cut(s)	135, 195, 408, 472, 747
BspPI	GGATC	2 cut(s)	369, 439
BsrFI	RCCGGY	3 cut(s)	130, 145, 748
BssAI	RCCGGY	3 cut(s)	130, 145, 748
BssECI	CCNNGG	5 cut(s)	239, 288, 530, 609, 822
BssMI	GATC	4 cut(s)	216, 374, 431, 552
BssNI	GRCGYC	3 cut(s)	87, 149, 321
BssT1I	CCWWGG	1 cut(s)	822
Bst2UI	CCWGG	2 cut(s)	289, 357
Bst4CI	ACNGT	2 cut(s)	721, 929
Bst6I	CTCTTC	3 cut(s)	825, 834, 864
BstACI	GRCGYC	3 cut(s)	87, 149, 321
BstC8I	GCNNGC	6 cut(s)	132, 280, 353, 465, 469, 980
BstDEI	CTNAG	3 cut(s)	74, 423, 636
BstDSI	CCRYGG	3 cut(s)	239, 530, 822
BstEII	GGTNACC	1 cut(s)	8
BstF5I	GGATG	3 cut(s)	387, 762, 1002
BstFNI	CGCG	4 cut(s)	476, 512, 532, 962
BstH2I	RGCGCY	2 cut(s)	116, 285
BstHHI	GCGC	4 cut(s)	115, 284, 478, 962
BstKTI	GATC	4 cut(s)	219, 377, 434, 555
BstMAI	GTCTC	3 cut(s)	539, 675, 776
BstMBI	GATC	4 cut(s)	216, 374, 431, 552
BstNI	CCWGG	2 cut(s)	289, 357
BstPI	GGTNACC	1 cut(s)	8
BstSCI	CCNGG	3 cut(s)	287, 355, 427
BstSFI	CTRYAG	1 cut(s)	361
BstUI	CGCG	4 cut(s)	476, 512, 532, 962
BstV2I	GAAGAC	2 cut(s)	90, 251
BsuRI	GGCC	4 cut(s)	212, 293, 535, 614
BtgI	CCRYGG	3 cut(s)	239, 530, 822
BtsCI	GGATG	3 cut(s)	387, 762, 1002
Cac8I	GCNNGC	6 cut(s)	132, 280, 353, 465, 469, 980
CaiI	CAGNNNCTG	1 cut(s)	933
CfoI	GCGC	4 cut(s)	115, 284, 478, 962
Cfr10I	RCCGGY	3 cut(s)	130, 145, 748
Cfr13I	GGNCC	2 cut(s)	291, 534
Cfr42I	CCGCGG	1 cut(s)	533
CseI	GACGC	2 cut(s)	138, 501
Csp6I	GTAC	1 cut(s)	817
CviAII	CATG	2 cut(s)	823, 943
CviQI	GTAC	1 cut(s)	817
DdeI	CTNAG	3 cut(s)	74, 423, 636
DpnI	GATC	4 cut(s)	218, 376, 433, 554
DpnII	GATC	4 cut(s)	216, 374, 431, 552
DrdI	GACNNNNNNGTC	1 cut(s)	326
DriI	GACNNNNNGTC	1 cut(s)	523
DseDI	GACNNNNNNGTC	1 cut(s)	326
Eam1104I	CTCTTC	3 cut(s)	825, 834, 864
Eam1105I	GACNNNNNGTC	1 cut(s)	523
EarI	CTCTTC	3 cut(s)	825, 834, 864
EciI	GGCGGA	5 cut(s)	254, 607, 665, 752, 758
Eco130I	CCWWGG	1 cut(s)	822
Eco147I	AGGCCT	2 cut(s)	212, 614
Eco24I	GRGCYC	2 cut(s)	198, 429
Eco88I	CYCGRG	1 cut(s)	29
Eco91I	GGTNACC	1 cut(s)	8
EcoO65I	GGTNACC	1 cut(s)	8
EcoRII	CCWGG	2 cut(s)	287, 355
EcoT14I	CCWWGG	1 cut(s)	822
EcoT38I	GRGCYC	2 cut(s)	198, 429
ErhI	CCWWGG	1 cut(s)	822
Esp3I	CGTCTC	3 cut(s)	539, 675, 776
FaeI	CATG	2 cut(s)	826, 946
FaiI	YATR	5 cut(s)	207, 824, 944, 954, 984
FaqI	GGGAC	2 cut(s)	293, 308
FatI	CATG	2 cut(s)	822, 942
FauI	CCCGC	3 cut(s)	135, 386, 971
FokI	GGATG	3 cut(s)	374, 769, 1009
FriOI	GRGCYC	2 cut(s)	198, 429
GlaI	GCGC	4 cut(s)	114, 283, 477, 961
GsaI	CCCAGC	2 cut(s)	101, 915
GsuI	CTGGAG	3 cut(s)	563, 824, 988
HaeII	RGCGCY	2 cut(s)	116, 285
HaeIII	GGCC	4 cut(s)	212, 293, 535, 614
HgaI	GACGC	2 cut(s)	138, 501
HhaI	GCGC	4 cut(s)	115, 284, 478, 962
Hin1I	GRCGYC	3 cut(s)	87, 149, 321
Hin1II	CATG	2 cut(s)	826, 946
Hin6I	GCGC	4 cut(s)	113, 282, 476, 960
HinP1I	GCGC	4 cut(s)	113, 282, 476, 960
HinfI	GANTC	1 cut(s)	524
HphI	GGTGA	5 cut(s)	151, 725, 763, 895, 958
Hpy166II	GTNNAC	1 cut(s)	819
Hpy188I	TCNGA	6 cut(s)	165, 221, 319, 517, 700, 1079
Hpy188III	TCNNGA	5 cut(s)	29, 271, 331, 1005, 1067
Hpy8I	GTNNAC	1 cut(s)	819
Hpy99I	CGWCG	4 cut(s)	323, 517, 700, 730
HpyAV	CCTTC	4 cut(s)	652, 665, 697, 880
HpyCH4III	ACNGT	2 cut(s)	721, 929
HpyCH4IV	ACGT	4 cut(s)	87, 248, 321, 725
HpyCH4V	TGCA	3 cut(s)	942, 1021, 1044
HpyF3I	CTNAG	3 cut(s)	74, 423, 636
HpySE526I	ACGT	4 cut(s)	87, 248, 321, 725
Hsp92I	GRCGYC	3 cut(s)	87, 149, 321
Hsp92II	CATG	2 cut(s)	826, 946
HspAI	GCGC	4 cut(s)	113, 282, 476, 960
Kpn2I	TCCGGA	1 cut(s)	330
KroI	GCCGGC	1 cut(s)	130
KroNI	GCCGGC	1 cut(s)	132
KspI	CCGCGG	1 cut(s)	533
Kzo9I	GATC	4 cut(s)	216, 374, 431, 552
LmnI	GCTCC	8 cut(s)	139, 193, 406, 476, 503, 745, 922, 1007
MaeII	ACGT	4 cut(s)	87, 248, 321, 725
MaeIII	GTNAC	3 cut(s)	8, 392, 721
MalI	GATC	4 cut(s)	218, 376, 433, 554
MboI	GATC	4 cut(s)	216, 374, 431, 552
MboII	GAAGA	9 cut(s)	95, 256, 684, 842, 848, 851, 881, 908, 917
MhlI	GDGCHC	4 cut(s)	198, 429, 927, 1004
MluCI	AATT	2 cut(s)	1048, 1062
MlyI	GAGTC	1 cut(s)	533
MmeI	TCCRAC	5 cut(s)	321, 342, 495, 678, 756
MroI	TCCGGA	1 cut(s)	330
MroNI	GCCGGC	1 cut(s)	130
MroXI	GAANNNNTTC	1 cut(s)	248
MspA1I	CMGCKG	3 cut(s)	532, 629, 647
MspR9I	CCNGG	3 cut(s)	289, 357, 429
MvaI	CCWGG	2 cut(s)	289, 357
MvnI	CGCG	4 cut(s)	476, 512, 532, 962
NaeI	GCCGGC	1 cut(s)	132
NciI	CCSGG	1 cut(s)	429
NcoI	CCATGG	1 cut(s)	822
NdeII	GATC	4 cut(s)	216, 374, 431, 552
NgoMIV	GCCGGC	1 cut(s)	130
NlaIII	CATG	2 cut(s)	826, 946
NlaIV	GGNNCC	5 cut(s)	135, 195, 408, 472, 747
NmeAIII	GCCGAG	2 cut(s)	504, 634
NmuCI	GTSAC	1 cut(s)	8
PaeR7I	CTCGAG	1 cut(s)	29
PceI	AGGCCT	2 cut(s)	212, 614
PcsI	WCGNNNNNNNCGW	1 cut(s)	575
PdiI	GCCGGC	1 cut(s)	132
PdmI	GAANNNNTTC	1 cut(s)	248
PleI	GAGTC	1 cut(s)	532
PpsI	GAGTC	1 cut(s)	532
Psp6I	CCWGG	2 cut(s)	287, 355
PspEI	GGTNACC	1 cut(s)	8
PspFI	CCCAGC	2 cut(s)	97, 911
PspGI	CCWGG	2 cut(s)	287, 355
PspN4I	GGNNCC	5 cut(s)	135, 195, 408, 472, 747
PspPI	GGNCC	2 cut(s)	291, 534
PstNI	CAGNNNCTG	1 cut(s)	933
RsaI	GTAC	1 cut(s)	818
RsaNI	GTAC	1 cut(s)	817
SacII	CCGCGG	1 cut(s)	533
Sau3AI	GATC	4 cut(s)	216, 374, 431, 552
Sau96I	GGNCC	2 cut(s)	291, 534
SchI	GAGTC	1 cut(s)	533
ScrFI	CCNGG	3 cut(s)	289, 357, 429
SduI	GDGCHC	4 cut(s)	198, 429, 927, 1004
SfcI	CTRYAG	1 cut(s)	361
Sfr274I	CTCGAG	1 cut(s)	29
Sfr303I	CCGCGG	1 cut(s)	533
SgrBI	CCGCGG	1 cut(s)	533
SlaI	CTCGAG	1 cut(s)	29
SmlI	CTYRAG	2 cut(s)	29, 269
SmoI	CTYRAG	2 cut(s)	29, 269
Sse9I	AATT	2 cut(s)	1048, 1062
SseBI	AGGCCT	2 cut(s)	212, 614
StuI	AGGCCT	2 cut(s)	212, 614
StyD4I	CCNGG	3 cut(s)	287, 355, 427
StyI	CCWWGG	1 cut(s)	822
TaaI	ACNGT	2 cut(s)	721, 929
TaiI	ACGT	4 cut(s)	90, 251, 324, 728
TaqI	TCGA	3 cut(s)	30, 81, 522
TasI	AATT	2 cut(s)	1048, 1062
TseFI	GTSAC	1 cut(s)	8
Tsp45I	GTSAC	1 cut(s)	8
TspDTI	ATGAA	1 cut(s)	1042
TspGWI	ACGGA	3 cut(s)	380, 490, 800
XapI	RAATTY	1 cut(s)	1062
XhoI	CTCGAG	1 cut(s)	29
XmnI	GAANNNNTTC	1 cut(s)	248
ZraI	GACGTC	2 cut(s)	88, 322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.